Wall clock time and date at job start Mon Mar 30 2020 02:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.46735 * 2 1 4 4 C 1.36936 * 119.99777 * 264.98548 * 3 2 1 5 5 H 1.08004 * 119.99664 * 146.98275 * 4 3 2 6 6 C 1.38815 * 120.00082 * 326.97638 * 4 3 2 7 7 N 1.31613 * 120.00281 * 338.68707 * 6 4 3 8 8 Si 1.86809 * 119.99690 * 158.68160 * 6 4 3 9 9 H 1.48502 * 109.47074 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46791 * 120.00198 * 8 6 4 11 11 H 1.48500 * 109.47176 * 240.00348 * 8 6 4 12 12 C 1.46499 * 120.00032 * 84.98935 * 3 2 1 13 13 H 1.08995 * 110.34962 * 359.30946 * 12 3 2 14 14 C 1.53993 * 110.30945 * 121.45137 * 12 3 2 15 15 N 1.47899 * 107.05722 * 117.69182 * 14 12 3 16 16 C 1.46906 * 110.99950 * 145.84641 * 15 14 12 17 17 C 1.48528 * 105.82383 * 25.32701 * 15 14 12 18 18 C 1.54591 * 110.30603 * 237.16679 * 12 3 2 19 19 H 1.08993 * 110.72779 * 337.48644 * 18 12 3 20 20 C 1.53008 * 110.72409 * 100.77040 * 18 12 3 21 21 H 1.09000 * 109.46922 * 299.99726 * 1 2 3 22 22 H 1.08997 * 109.47021 * 60.00405 * 1 2 3 23 23 H 1.09000 * 109.46853 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47289 * 240.00467 * 2 1 3 25 25 H 1.08996 * 109.47535 * 119.99671 * 2 1 3 26 26 H 0.97003 * 120.00205 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.91869 * 237.04485 * 14 12 3 28 28 H 1.09005 * 109.91819 * 358.13832 * 14 12 3 29 29 H 1.08997 * 109.47316 * 59.99976 * 16 15 14 30 30 H 1.09003 * 109.46557 * 179.97438 * 16 15 14 31 31 H 1.08999 * 109.46934 * 299.99568 * 16 15 14 32 32 H 1.09006 * 110.66191 * 79.22666 * 17 15 14 33 33 H 1.09001 * 110.67344 * 202.35905 * 17 15 14 34 34 H 1.08998 * 109.46915 * 59.99456 * 20 18 12 35 35 H 1.08993 * 109.46989 * 180.02562 * 20 18 12 36 36 H 1.09001 * 109.46649 * 299.99614 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3442 1.9923 -1.1814 5 1 2.1881 3.0542 -1.3012 6 6 2.8753 1.2467 -2.2250 7 7 3.4520 0.0893 -1.9800 8 14 2.7714 1.8862 -3.9771 9 1 2.0809 3.2009 -3.9840 10 1 4.1413 2.0441 -4.5284 11 1 2.0100 0.9223 -4.8115 12 6 2.1579 2.1089 1.2639 13 1 1.8455 1.4817 2.0988 14 6 3.6145 2.5696 1.4572 15 7 3.6003 4.0480 1.4966 16 6 4.6269 4.5601 2.4143 17 6 2.2395 4.4279 1.9547 18 6 1.3241 3.4102 1.2287 19 1 1.1393 3.7223 0.2009 20 6 0.0071 3.2300 1.9865 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5137 0.8900 26 1 3.8235 -0.4315 -2.7092 27 1 4.0068 2.1769 2.3953 28 1 4.2272 2.2231 0.6249 29 1 5.6103 4.2288 2.0808 30 1 4.5948 5.6496 2.4237 31 1 4.4374 4.1819 3.4188 32 1 2.1534 4.3197 3.0359 33 1 2.0008 5.4465 1.6487 34 1 0.2175 2.9745 3.0250 35 1 -0.5637 4.1577 1.9485 36 1 -0.5707 2.4291 1.5252 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307545891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:46 Heat of formation + Delta-G solvation = 23.969048 kcal Electronic energy + Delta-G solvation = -15340.933401 eV Core-core repulsion = 13053.659851 eV Total energy + Delta-G solvation = -2287.273550 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.64353 -35.24337 -32.52916 -31.12158 -29.69900 -27.29111 -26.38156 -24.32885 -23.07301 -20.94753 -19.96923 -19.30233 -16.17134 -15.59117 -14.78469 -14.42883 -13.91554 -13.62125 -13.48187 -12.79114 -12.62352 -12.40374 -11.90256 -11.83856 -11.50164 -11.28479 -11.07311 -10.83685 -10.77052 -10.58048 -10.26015 -10.07538 -10.02771 -9.84386 -9.57979 -9.40124 -8.35542 -7.77353 -6.49960 -5.67937 -3.20240 3.43011 3.51556 3.54941 4.56296 4.66410 5.28093 5.31939 5.44892 5.54781 5.72477 5.78085 5.85789 5.99314 6.04626 6.11577 6.17423 6.19450 6.31016 6.41982 6.45056 6.57035 6.66887 6.74793 6.78180 6.94850 7.10288 7.22615 7.33916 7.59924 7.68418 7.85797 7.97629 8.62029 9.31315 9.94301 10.48749 11.32979 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026057 B = 0.012504 C = 0.010325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.305917 B = 2238.706714 C = 2711.305342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 N -0.575 5.575 4 C -0.235 4.235 5 H 0.068 0.932 6 C 0.003 3.997 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.292 1.292 11 H -0.291 1.291 12 C 0.172 3.828 13 H 0.052 0.948 14 C 0.027 3.973 15 N -0.515 5.515 16 C 0.020 3.980 17 C 0.040 3.960 18 C -0.111 4.111 19 H 0.092 0.908 20 C -0.135 4.135 21 H 0.032 0.968 22 H 0.048 0.952 23 H 0.032 0.968 24 H 0.105 0.895 25 H 0.016 0.984 26 H 0.251 0.749 27 H 0.020 0.980 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.018 0.982 32 H 0.032 0.968 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.044 0.956 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.979 4.532 7.696 9.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.009 3.991 3 N -0.294 5.294 4 C -0.365 4.365 5 H 0.085 0.915 6 C -0.195 4.195 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.219 1.219 11 H -0.218 1.218 12 C 0.063 3.937 13 H 0.070 0.930 14 C -0.102 4.102 15 N -0.239 5.239 16 C -0.130 4.130 17 C -0.088 4.088 18 C -0.132 4.132 19 H 0.111 0.889 20 C -0.192 4.192 21 H 0.051 0.949 22 H 0.067 0.933 23 H 0.051 0.949 24 H 0.122 0.878 25 H 0.034 0.966 26 H 0.061 0.939 27 H 0.039 0.961 28 H 0.116 0.884 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.036 0.964 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.760 4.622 7.064 8.881 hybrid contribution -0.074 -0.025 -0.021 0.081 sum -2.834 4.597 7.043 8.875 Atomic orbital electron populations 1.22383 1.01096 0.98513 1.00321 1.21044 0.89665 0.86454 1.01965 1.43992 1.73476 1.11171 1.00774 1.19073 1.34409 0.93778 0.89212 0.91482 1.25039 0.97690 0.97782 0.99027 1.69961 1.38569 1.14888 1.30531 0.86320 0.77263 0.78375 0.85442 1.20178 1.21909 1.21787 1.21245 0.91219 0.91757 0.89524 0.92963 1.23522 1.00851 0.85874 0.99945 1.64684 1.02568 1.10983 1.45647 1.22465 0.96709 0.99995 0.93787 1.23233 0.89852 0.99284 0.96416 1.22558 0.93841 0.96575 1.00245 0.88935 1.21716 0.97490 1.00949 0.99094 0.94864 0.93325 0.94934 0.87803 0.96576 0.93852 0.96121 0.88389 0.91816 0.92215 0.96398 0.94995 0.91374 0.93860 0.93695 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 10.24 37.16 0.38 -2.93 16 2 C 0.13 3.18 5.92 -4.04 -0.02 3.15 16 3 N -0.57 -13.97 2.43 -164.12 -0.40 -14.37 16 4 C -0.23 -6.29 8.03 -15.06 -0.12 -6.41 16 5 H 0.07 1.85 6.70 -52.48 -0.35 1.50 16 6 C 0.00 0.08 4.96 -17.43 -0.09 -0.01 16 7 N -0.90 -25.62 11.21 55.49 0.62 -25.00 16 8 Si 0.90 21.93 29.60 -169.99 -5.03 16.90 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 C 0.17 3.60 3.10 -66.58 -0.21 3.40 16 13 H 0.05 1.06 7.63 -51.93 -0.40 0.66 16 14 C 0.03 0.57 6.16 -2.76 -0.02 0.56 16 15 N -0.52 -9.77 5.55 -238.71 -1.33 -11.10 16 16 C 0.02 0.30 9.40 60.07 0.56 0.87 16 17 C 0.04 0.69 6.00 -1.90 -0.01 0.68 16 18 C -0.11 -2.08 3.22 -88.76 -0.29 -2.36 16 19 H 0.09 1.98 6.38 -51.93 -0.33 1.65 16 20 C -0.13 -2.11 9.16 37.16 0.34 -1.77 16 21 H 0.03 0.62 6.74 -51.93 -0.35 0.27 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.10 2.78 5.23 -51.93 -0.27 2.51 16 25 H 0.02 0.36 8.05 -51.93 -0.42 -0.05 16 26 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.02 0.40 7.73 -51.93 -0.40 0.00 16 28 H 0.10 2.44 7.38 -51.93 -0.38 2.06 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.02 0.25 8.00 -51.93 -0.42 -0.16 16 32 H 0.03 0.50 7.84 -51.93 -0.41 0.09 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.04 0.62 8.10 -51.93 -0.42 0.20 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.97 6.74 -51.93 -0.35 0.62 16 LS Contribution 279.97 15.07 4.22 4.22 Total: -1.00 -27.96 279.97 -7.55 -35.51 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.17 Total: -1.31 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 0.53 Total: -4.85 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: -1.10 Total: -50.47 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.96 -7.55 -35.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307545891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.482 kcal (2) G-P(sol) polarization free energy of solvation -27.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds