Wall clock time and date at job start Mon Mar 30 2020 02:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.46735 * 2 1 4 4 C 1.36936 * 119.99777 * 264.98548 * 3 2 1 5 5 H 1.08004 * 119.99664 * 146.98275 * 4 3 2 6 6 C 1.38815 * 120.00082 * 326.97638 * 4 3 2 7 7 N 1.31613 * 120.00281 * 338.68707 * 6 4 3 8 8 Si 1.86809 * 119.99690 * 158.68160 * 6 4 3 9 9 H 1.48502 * 109.47074 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46791 * 120.00198 * 8 6 4 11 11 H 1.48500 * 109.47176 * 240.00348 * 8 6 4 12 12 C 1.46499 * 120.00032 * 84.98935 * 3 2 1 13 13 H 1.08995 * 110.34962 * 359.30946 * 12 3 2 14 14 C 1.53993 * 110.30945 * 121.45137 * 12 3 2 15 15 N 1.47899 * 107.05722 * 117.69182 * 14 12 3 16 16 C 1.46906 * 110.99950 * 145.84641 * 15 14 12 17 17 C 1.48528 * 105.82383 * 25.32701 * 15 14 12 18 18 C 1.54591 * 110.30603 * 237.16679 * 12 3 2 19 19 H 1.08993 * 110.72779 * 337.48644 * 18 12 3 20 20 C 1.53008 * 110.72409 * 100.77040 * 18 12 3 21 21 H 1.09000 * 109.46922 * 299.99726 * 1 2 3 22 22 H 1.08997 * 109.47021 * 60.00405 * 1 2 3 23 23 H 1.09000 * 109.46853 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47289 * 240.00467 * 2 1 3 25 25 H 1.08996 * 109.47535 * 119.99671 * 2 1 3 26 26 H 0.97003 * 120.00205 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.91869 * 237.04485 * 14 12 3 28 28 H 1.09005 * 109.91819 * 358.13832 * 14 12 3 29 29 H 1.08997 * 109.47316 * 59.99976 * 16 15 14 30 30 H 1.09003 * 109.46557 * 179.97438 * 16 15 14 31 31 H 1.08999 * 109.46934 * 299.99568 * 16 15 14 32 32 H 1.09006 * 110.66191 * 79.22666 * 17 15 14 33 33 H 1.09001 * 110.67344 * 202.35905 * 17 15 14 34 34 H 1.08998 * 109.46915 * 59.99456 * 20 18 12 35 35 H 1.08993 * 109.46989 * 180.02562 * 20 18 12 36 36 H 1.09001 * 109.46649 * 299.99614 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3442 1.9923 -1.1814 5 1 2.1881 3.0542 -1.3012 6 6 2.8753 1.2467 -2.2250 7 7 3.4520 0.0893 -1.9800 8 14 2.7714 1.8862 -3.9771 9 1 2.0809 3.2009 -3.9840 10 1 4.1413 2.0441 -4.5284 11 1 2.0100 0.9223 -4.8115 12 6 2.1579 2.1089 1.2639 13 1 1.8455 1.4817 2.0988 14 6 3.6145 2.5696 1.4572 15 7 3.6003 4.0480 1.4966 16 6 4.6269 4.5601 2.4143 17 6 2.2395 4.4279 1.9547 18 6 1.3241 3.4102 1.2287 19 1 1.1393 3.7223 0.2009 20 6 0.0071 3.2300 1.9865 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5137 0.8900 26 1 3.8235 -0.4315 -2.7092 27 1 4.0068 2.1769 2.3953 28 1 4.2272 2.2231 0.6249 29 1 5.6103 4.2288 2.0808 30 1 4.5948 5.6496 2.4237 31 1 4.4374 4.1819 3.4188 32 1 2.1534 4.3197 3.0359 33 1 2.0008 5.4465 1.6487 34 1 0.2175 2.9745 3.0250 35 1 -0.5637 4.1577 1.9485 36 1 -0.5707 2.4291 1.5252 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307545891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:45 Heat of formation + Delta-G solvation = 6.283625 kcal Electronic energy + Delta-G solvation = -15341.700298 eV Core-core repulsion = 13053.659851 eV Total energy + Delta-G solvation = -2288.040447 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.19705 -37.03005 -34.07737 -33.02527 -31.36276 -28.99724 -27.73028 -26.16760 -24.62064 -22.66597 -21.52059 -20.99819 -18.10225 -17.28928 -16.50111 -16.11802 -15.41726 -15.31329 -15.13696 -14.29176 -14.17044 -13.94986 -13.55714 -13.28039 -13.13657 -12.80523 -12.75664 -12.63815 -12.41935 -12.26419 -11.97340 -11.78692 -11.65366 -11.49704 -11.34391 -11.19526 -10.39946 -9.20086 -8.48836 -7.73813 -5.28926 1.45696 1.49241 1.58649 2.56376 3.24872 3.32330 3.61601 3.95042 4.06829 4.35327 4.42767 4.49449 4.58701 4.61132 4.68809 4.75161 4.80560 4.89307 4.95464 4.98654 5.01264 5.06040 5.18066 5.24554 5.43773 5.48331 5.57303 5.60367 5.80407 5.95992 6.11245 6.30927 6.56637 7.26953 7.98468 8.46432 9.23311 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026057 B = 0.012504 C = 0.010325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.305917 B = 2238.706714 C = 2711.305342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.132 3.868 3 N -0.587 5.587 4 C -0.226 4.226 5 H 0.056 0.944 6 C -0.047 4.047 7 N -0.924 5.924 8 Si 0.949 3.051 9 H -0.271 1.271 10 H -0.297 1.297 11 H -0.291 1.291 12 C 0.164 3.836 13 H 0.063 0.937 14 C 0.037 3.963 15 N -0.541 5.541 16 C 0.021 3.979 17 C 0.048 3.952 18 C -0.106 4.106 19 H 0.059 0.941 20 C -0.127 4.127 21 H 0.050 0.950 22 H 0.032 0.968 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.019 0.981 26 H 0.247 0.753 27 H 0.034 0.966 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.033 0.967 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.057 5.769 9.258 11.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.006 3.994 3 N -0.307 5.307 4 C -0.357 4.357 5 H 0.073 0.927 6 C -0.242 4.242 7 N -0.570 5.570 8 Si 0.779 3.221 9 H -0.196 1.196 10 H -0.224 1.224 11 H -0.218 1.218 12 C 0.056 3.944 13 H 0.081 0.919 14 C -0.092 4.092 15 N -0.265 5.265 16 C -0.128 4.128 17 C -0.080 4.080 18 C -0.127 4.127 19 H 0.078 0.922 20 C -0.184 4.184 21 H 0.069 0.931 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.037 0.963 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.853 5.881 8.648 11.145 hybrid contribution 0.285 -0.374 -0.429 0.637 sum -3.568 5.507 8.219 10.517 Atomic orbital electron populations 1.22173 0.98263 0.99990 1.00312 1.20982 0.91882 0.86025 1.00525 1.44138 1.73768 1.11449 1.01361 1.19096 1.32936 0.93266 0.90379 0.92651 1.25620 0.98337 0.98342 1.01914 1.70086 1.40058 1.15987 1.30917 0.85473 0.76734 0.77960 0.81928 1.19609 1.22432 1.21772 1.21467 0.91888 0.92725 0.88288 0.91872 1.23211 0.99840 0.87685 0.98499 1.64584 1.04545 1.09426 1.47953 1.22509 0.95396 1.01165 0.93714 1.23238 0.88007 0.99263 0.97468 1.22427 0.95481 0.95448 0.99302 0.92246 1.21644 0.95656 1.01721 0.99414 0.93139 0.94916 0.92719 0.91035 0.96271 0.94367 0.94811 0.93397 0.92297 0.90131 0.94851 0.92621 0.90024 0.91990 0.91632 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.81 10.24 71.98 0.74 -5.08 16 2 C 0.13 6.24 5.92 86.38 0.51 6.75 16 3 N -0.59 -28.76 2.43 -673.15 -1.63 -30.40 16 4 C -0.23 -12.35 8.03 84.03 0.67 -11.67 16 5 H 0.06 3.12 6.70 -2.91 -0.02 3.10 16 6 C -0.05 -2.63 4.96 84.86 0.42 -2.21 16 7 N -0.92 -54.53 11.21 21.65 0.24 -54.29 16 8 Si 0.95 46.03 29.60 68.60 2.03 48.06 16 9 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 11 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 12 C 0.16 6.75 3.10 45.87 0.14 6.89 16 13 H 0.06 2.43 7.63 -2.39 -0.02 2.42 16 14 C 0.04 1.55 6.16 86.45 0.53 2.09 16 15 N -0.54 -19.67 5.55 -909.14 -5.05 -24.72 16 16 C 0.02 0.58 9.40 127.69 1.20 1.78 16 17 C 0.05 1.49 6.00 86.65 0.52 2.01 16 18 C -0.11 -3.76 3.22 -9.59 -0.03 -3.79 16 19 H 0.06 2.51 6.38 -2.39 -0.02 2.50 16 20 C -0.13 -3.56 9.16 71.98 0.66 -2.90 16 21 H 0.05 1.79 6.74 -2.39 -0.02 1.77 16 22 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.07 3.93 5.23 -2.38 -0.01 3.92 16 25 H 0.02 0.87 8.05 -2.39 -0.02 0.85 16 26 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 27 H 0.03 1.27 7.73 -2.39 -0.02 1.26 16 28 H 0.05 2.46 7.38 -2.38 -0.02 2.45 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.03 0.84 8.00 -2.39 -0.02 0.83 16 32 H 0.06 1.49 7.84 -2.38 -0.02 1.47 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.05 1.46 6.74 -2.39 -0.02 1.44 16 Total: -1.00 -61.03 279.97 1.98 -59.04 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.02 Total: 8.43 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: 5.37 Total: -6.13 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -6.44 Total: -109.40 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -61.03 1.98 -59.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307545891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.327 kcal (2) G-P(sol) polarization free energy of solvation -61.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds