Wall clock time and date at job start Mon Mar 30 2020 02:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99891 * 2 1 4 4 H 1.48504 * 109.47166 * 269.99889 * 3 2 1 5 5 H 1.48501 * 109.47423 * 30.00270 * 3 2 1 6 6 H 1.48508 * 109.46891 * 150.00071 * 3 2 1 7 7 C 1.38812 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99185 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00390 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99971 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47092 * 34.99937 * 10 9 7 12 12 C 1.53000 * 109.47023 * 274.99678 * 10 9 7 13 13 O 1.42899 * 109.47494 * 295.00220 * 12 10 9 14 14 C 1.50703 * 109.47155 * 154.99975 * 10 9 7 15 15 C 1.38422 * 122.54191 * 219.73612 * 14 10 9 16 16 C 1.33383 * 114.92245 * 179.75741 * 15 14 10 17 17 S 1.75888 * 109.59289 * 0.48359 * 16 15 14 18 18 C 1.33387 * 122.53562 * 40.02265 * 14 10 9 19 19 H 0.96997 * 119.99679 * 359.97438 * 1 2 3 20 20 H 0.97004 * 119.99805 * 0.02562 * 9 7 2 21 21 H 1.09001 * 109.46952 * 55.00212 * 12 10 9 22 22 H 1.09008 * 109.47142 * 174.99638 * 12 10 9 23 23 H 0.96693 * 114.00295 * 179.97438 * 13 12 10 24 24 H 1.08008 * 122.53509 * 359.97438 * 15 14 10 25 25 H 1.07998 * 125.20344 * 180.20577 * 16 15 14 26 26 H 1.07998 * 125.21056 * 359.97438 * 18 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5505 0.5889 12 6 2.4218 -4.0356 -1.4376 13 8 1.2276 -4.2886 -2.1805 14 6 1.1940 -4.7357 0.5999 15 6 1.6979 -5.7083 1.4463 16 6 0.7979 -6.5851 1.8938 17 16 -0.7821 -6.2035 1.2218 18 6 -0.1132 -4.8290 0.3517 19 1 -0.4849 0.8400 0.0004 20 1 0.3555 -2.3880 -0.0005 21 1 2.9715 -3.2164 -1.9012 22 1 3.0424 -4.9317 -1.4311 23 1 1.3827 -4.5345 -3.1026 24 1 2.7402 -5.7516 1.7260 25 1 1.0081 -7.4066 2.5625 26 1 -0.6752 -4.1625 -0.2857 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308071257.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:27 Heat of formation + Delta-G solvation = -1.204229 kcal Electronic energy + Delta-G solvation = -12109.647555 eV Core-core repulsion = 9894.650430 eV Total energy + Delta-G solvation = -2214.997125 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.31961 -35.84604 -34.03289 -31.36823 -28.71154 -27.44856 -23.90559 -23.50662 -20.49177 -18.18357 -17.83416 -16.52585 -16.36601 -15.35013 -14.36413 -13.88970 -13.36398 -13.24477 -12.74934 -12.25800 -12.07923 -11.96710 -11.38437 -10.95812 -10.85251 -10.78798 -10.22438 -10.03456 -9.72907 -9.27526 -8.92556 -8.26411 -7.87812 -6.94577 -5.74927 -3.03385 1.54679 2.14644 2.46907 3.27132 3.44259 3.48854 3.50825 4.59632 5.01414 5.31254 5.54343 5.68551 5.74736 5.86516 6.05680 6.07646 6.36066 6.42296 6.51997 6.67144 6.94451 7.16830 7.68377 8.28856 8.43161 9.54702 10.12085 10.48206 11.47671 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.041657 B = 0.008656 C = 0.008180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.993732 B = 3233.931589 C = 3422.248499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.711 5.711 10 C 0.233 3.767 11 H 0.068 0.932 12 C 0.063 3.937 13 O -0.557 6.557 14 C -0.100 4.100 15 C -0.120 4.120 16 C -0.228 4.228 17 S 0.050 5.950 18 C -0.159 4.159 19 H 0.255 0.745 20 H 0.387 0.613 21 H 0.046 0.954 22 H 0.024 0.976 23 H 0.360 0.640 24 H 0.134 0.866 25 H 0.156 0.844 26 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.586 -12.241 0.119 12.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.352 5.352 10 C 0.119 3.881 11 H 0.086 0.914 12 C -0.018 4.018 13 O -0.360 6.360 14 C -0.112 4.112 15 C -0.152 4.152 16 C -0.363 4.363 17 S 0.312 5.688 18 C -0.294 4.294 19 H 0.065 0.935 20 H 0.222 0.778 21 H 0.065 0.935 22 H 0.042 0.958 23 H 0.204 0.796 24 H 0.152 0.848 25 H 0.174 0.826 26 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.965 -12.572 0.871 12.639 hybrid contribution 1.869 1.425 -0.695 2.451 sum 2.833 -11.146 0.176 11.502 Atomic orbital electron populations 1.69676 1.05139 1.25651 1.57268 1.24738 0.95491 0.97645 1.02871 0.86194 0.78642 0.83882 0.77467 1.21762 1.21770 1.20747 1.19247 0.90973 0.84120 1.43079 0.91154 1.42398 1.05981 0.98945 1.87902 1.18990 0.93501 0.84612 0.90950 0.91435 1.23054 0.86391 0.96908 0.95462 1.86576 1.32153 1.91907 1.25330 1.19205 0.94503 0.98317 0.99177 1.20095 1.00525 0.95374 0.99163 1.25344 0.95980 1.06083 1.08889 1.84003 1.11930 1.27462 1.45381 1.25389 0.98114 1.00962 1.04972 0.93484 0.77753 0.93539 0.95772 0.79552 0.84782 0.82626 0.81611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.48 13.06 55.49 0.72 -27.76 15 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 15 3 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 15 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 15 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 15 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 7 C -0.24 -6.78 9.93 -15.06 -0.15 -6.93 15 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 15 9 N -0.71 -18.28 5.03 -54.55 -0.27 -18.55 15 10 C 0.23 4.82 3.00 -69.08 -0.21 4.62 15 11 H 0.07 1.36 8.02 -51.93 -0.42 0.94 15 12 C 0.06 1.16 6.85 37.16 0.25 1.41 15 13 O -0.56 -10.23 12.31 -35.23 -0.43 -10.67 15 14 C -0.10 -1.89 4.72 -106.25 -0.50 -2.40 15 15 C -0.12 -1.92 9.95 -41.21 -0.41 -2.33 15 16 C -0.23 -3.32 11.23 29.04 0.33 -2.99 15 17 S 0.05 0.78 23.34 -107.50 -2.51 -1.73 15 18 C -0.16 -3.01 9.23 29.04 0.27 -2.74 15 19 H 0.26 7.55 8.31 -40.82 -0.34 7.22 15 20 H 0.39 10.73 6.41 -40.82 -0.26 10.46 15 21 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 22 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 15 23 H 0.36 4.85 9.12 45.56 0.42 5.26 15 24 H 0.13 1.84 8.06 -52.48 -0.42 1.42 15 25 H 0.16 1.78 8.06 -52.49 -0.42 1.36 15 26 H 0.17 3.42 7.31 -52.49 -0.38 3.03 15 LS Contribution 244.41 15.07 3.68 3.68 Total: -1.00 -31.54 244.41 -6.23 -37.77 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -1.88 Total: 11.62 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -0.52 Total: -11.77 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.45 Total: -46.31 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -0.43 Total: -10.67 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.54 -6.23 -37.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308071257.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.566 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds