Wall clock time and date at job start Mon Mar 30 2020 02:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46902 * 110.99730 * 2 1 4 4 C 1.46900 * 110.99548 * 123.94844 * 2 1 3 5 5 H 1.09005 * 109.46997 * 201.06849 * 4 2 1 6 6 C 1.52996 * 109.47407 * 321.06860 * 4 2 1 7 7 N 1.46900 * 109.47323 * 302.88348 * 6 4 2 8 8 C 1.46899 * 111.00433 * 187.69985 * 7 6 4 9 9 C 1.50699 * 109.47505 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99562 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00272 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99633 * 359.97438 * 11 9 8 13 13 Si 1.86790 * 120.00234 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47011 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47406 * 119.99702 * 13 11 9 16 16 H 1.48501 * 109.47346 * 239.99768 * 13 11 9 17 17 C 1.53000 * 109.47056 * 81.07238 * 4 2 1 18 18 C 1.53002 * 117.49839 * 357.59833 * 17 4 2 19 19 C 1.52999 * 117.49926 * 66.25500 * 17 4 2 20 20 H 1.08994 * 109.47425 * 301.27743 * 1 2 3 21 21 H 1.09009 * 109.46737 * 61.27485 * 1 2 3 22 22 H 1.09000 * 109.47061 * 181.26793 * 1 2 3 23 23 H 1.09008 * 109.46524 * 193.70051 * 3 2 1 24 24 H 1.08997 * 109.47205 * 313.69442 * 3 2 1 25 25 H 1.08998 * 109.47498 * 73.69606 * 3 2 1 26 26 H 1.08998 * 109.47154 * 62.88432 * 6 4 2 27 27 H 1.09001 * 109.47326 * 182.88655 * 6 4 2 28 28 H 1.00898 * 110.99881 * 63.74277 * 7 6 4 29 29 H 1.09002 * 109.46921 * 300.00227 * 8 7 6 30 30 H 1.08997 * 109.47176 * 59.99934 * 8 7 6 31 31 H 0.97001 * 119.99924 * 180.02562 * 12 11 9 32 32 H 1.09001 * 115.55096 * 211.92898 * 17 4 2 33 33 H 1.08996 * 117.49722 * 215.00904 * 18 17 4 34 34 H 1.09002 * 117.49632 * 0.02562 * 18 17 4 35 35 H 1.08995 * 117.50209 * 359.97438 * 19 17 4 36 36 H 1.09007 * 117.49578 * 144.99571 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 3.0209 -0.4570 1.3404 6 6 1.1306 -0.5044 2.3724 7 7 1.1000 0.9373 2.6525 8 6 0.4323 1.2110 3.9320 9 6 0.4196 2.6967 4.1844 10 1 0.8637 3.3701 3.4663 11 6 -0.1578 3.1961 5.3325 12 7 -0.6981 2.3758 6.2072 13 14 -0.1728 5.0375 5.6456 14 1 0.4944 5.7367 4.5182 15 1 -1.5764 5.5088 5.7599 16 1 0.5522 5.3309 6.9080 17 6 1.9691 -2.2587 0.8034 18 6 1.3810 -2.6698 -0.5479 19 6 2.8917 -2.7486 -0.3145 20 1 -0.3634 0.5335 0.8782 21 1 -0.3633 0.4940 -0.9013 22 1 -0.3633 -1.0274 0.0227 23 1 3.0578 1.3528 -0.2434 24 1 1.4629 1.9651 -0.7430 25 1 1.8563 1.8141 0.9863 26 1 0.1169 -0.8603 2.1880 27 1 1.5507 -1.0320 3.2287 28 1 0.6588 1.4428 1.8990 29 1 -0.5922 0.8406 3.8937 30 1 0.9699 0.7100 4.7369 31 1 -1.1047 2.7271 7.0147 32 1 1.8036 -2.9269 1.6485 33 1 0.8285 -3.6083 -0.5918 34 1 1.0132 -1.8766 -1.1989 35 1 3.5171 -2.0075 -0.8121 36 1 3.3332 -3.7392 -0.2047 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308316035.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:53 Heat of formation + Delta-G solvation = 45.937616 kcal Electronic energy + Delta-G solvation = -14690.297930 eV Core-core repulsion = 12403.977009 eV Total energy + Delta-G solvation = -2286.320921 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.27512 -35.86272 -34.12144 -32.24734 -29.23880 -27.40295 -26.36200 -23.30440 -22.11568 -22.04973 -21.19097 -19.14866 -16.68609 -15.81688 -15.76108 -14.85840 -14.63152 -14.23886 -13.94754 -12.89424 -12.74768 -12.69072 -12.15333 -11.80354 -11.66506 -11.40721 -11.27048 -11.12980 -10.98210 -10.78814 -10.74022 -10.55662 -10.13961 -9.90126 -9.69049 -9.18377 -8.52345 -7.91041 -7.33411 -6.06698 -4.09194 3.28493 3.35789 3.40647 3.98305 4.29003 4.40579 4.80658 5.16869 5.23149 5.29084 5.36405 5.47607 5.57606 5.66468 5.74691 5.82986 5.84061 5.95568 6.01822 6.13714 6.18428 6.27650 6.35202 6.39320 6.47551 6.55007 7.20846 7.33036 7.37503 7.39786 7.73455 8.08315 8.29669 8.54184 8.99818 9.56070 11.04437 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054249 B = 0.006544 C = 0.006210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.012349 B = 4277.791478 C = 4507.600898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.537 5.537 3 C 0.001 3.999 4 C 0.115 3.885 5 H 0.086 0.914 6 C 0.032 3.968 7 N -0.692 5.692 8 C 0.192 3.808 9 C -0.515 4.515 10 H 0.061 0.939 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.899 3.101 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.283 1.283 17 C -0.147 4.147 18 C -0.172 4.172 19 C -0.173 4.173 20 H 0.035 0.965 21 H 0.061 0.939 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.025 0.975 27 H 0.068 0.932 28 H 0.329 0.671 29 H -0.015 1.015 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 -7.157 -12.029 14.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.260 5.260 3 C -0.147 4.147 4 C 0.006 3.994 5 H 0.104 0.896 6 C -0.099 4.099 7 N -0.327 5.327 8 C 0.066 3.934 9 C -0.553 4.553 10 H 0.080 0.920 11 C -0.146 4.146 12 N -0.537 5.537 13 Si 0.727 3.273 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.209 1.209 17 C -0.166 4.166 18 C -0.209 4.209 19 C -0.210 4.210 20 H 0.053 0.947 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.151 0.849 29 H 0.003 0.997 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.296 -7.350 -12.009 14.720 hybrid contribution -1.308 1.103 0.926 1.945 sum 2.989 -6.247 -11.082 13.068 Atomic orbital electron populations 1.22576 0.88388 1.01998 1.00660 1.62213 1.07432 1.14189 1.42156 1.22780 0.99955 0.88965 1.03013 1.21249 0.99237 0.90719 0.88231 0.89638 1.22503 0.97866 0.92021 0.97490 1.61045 1.59888 1.04856 1.06888 1.19571 0.91406 0.96752 0.85705 1.21201 1.36784 0.91857 1.05492 0.92043 1.24997 0.95303 0.98277 0.95985 1.69978 1.38575 1.34463 1.10645 0.86422 0.77601 0.85045 0.78235 1.19647 1.21059 1.20937 1.22294 1.05704 0.96025 0.92584 1.22992 0.95705 1.02222 0.99945 1.22821 0.93409 1.01533 1.03222 0.94704 0.92029 0.91296 0.92124 0.92506 0.90768 0.95694 0.91394 0.84898 0.99730 0.95414 0.92928 0.88133 0.90214 0.87081 0.88862 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 7.25 60.07 0.44 0.61 16 2 N -0.54 -7.69 3.71 -243.17 -0.90 -8.59 16 3 C 0.00 0.02 9.12 60.07 0.55 0.56 16 4 C 0.11 1.73 2.48 -67.71 -0.17 1.56 16 5 H 0.09 1.37 7.86 -51.93 -0.41 0.96 16 6 C 0.03 0.59 4.47 -3.83 -0.02 0.57 16 7 N -0.69 -14.84 5.09 -115.06 -0.59 -15.43 16 8 C 0.19 5.10 5.42 -4.98 -0.03 5.07 16 9 C -0.51 -14.67 9.32 -34.44 -0.32 -14.99 16 10 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 13 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 C -0.15 -1.92 5.58 -90.62 -0.51 -2.42 16 18 C -0.17 -2.03 8.67 -26.69 -0.23 -2.26 16 19 C -0.17 -2.00 10.24 -26.70 -0.27 -2.28 16 20 H 0.03 0.57 4.99 -51.93 -0.26 0.31 16 21 H 0.06 0.77 8.12 -51.92 -0.42 0.35 16 22 H 0.07 0.92 6.29 -51.93 -0.33 0.60 16 23 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 24 H 0.06 0.75 8.01 -51.93 -0.42 0.33 16 25 H 0.07 1.27 4.68 -51.93 -0.24 1.03 16 26 H 0.02 0.46 6.65 -51.93 -0.35 0.11 16 27 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 28 H 0.33 6.80 4.18 -39.29 -0.16 6.63 16 29 H -0.02 -0.43 8.14 -51.93 -0.42 -0.85 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.10 1.29 8.06 -51.93 -0.42 0.87 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.11 1.39 5.89 -51.93 -0.31 1.09 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 278.75 15.07 4.20 4.20 Total: -1.00 -29.22 278.75 -8.04 -37.26 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.81 Total: 4.17 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -0.66 Total: -12.07 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.75 Total: -50.27 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.22 -8.04 -37.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308316035.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.199 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds