Wall clock time and date at job start Mon Mar 30 2020 02:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46902 * 110.99730 * 2 1 4 4 C 1.46900 * 110.99548 * 123.94844 * 2 1 3 5 5 H 1.09005 * 109.46997 * 201.06849 * 4 2 1 6 6 C 1.52996 * 109.47407 * 321.06860 * 4 2 1 7 7 N 1.46900 * 109.47323 * 302.88348 * 6 4 2 8 8 C 1.46899 * 111.00433 * 187.69985 * 7 6 4 9 9 C 1.50699 * 109.47505 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99562 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00272 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99633 * 359.97438 * 11 9 8 13 13 Si 1.86790 * 120.00234 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47011 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47406 * 119.99702 * 13 11 9 16 16 H 1.48501 * 109.47346 * 239.99768 * 13 11 9 17 17 C 1.53000 * 109.47056 * 81.07238 * 4 2 1 18 18 C 1.53002 * 117.49839 * 357.59833 * 17 4 2 19 19 C 1.52999 * 117.49926 * 66.25500 * 17 4 2 20 20 H 1.08994 * 109.47425 * 301.27743 * 1 2 3 21 21 H 1.09009 * 109.46737 * 61.27485 * 1 2 3 22 22 H 1.09000 * 109.47061 * 181.26793 * 1 2 3 23 23 H 1.09008 * 109.46524 * 193.70051 * 3 2 1 24 24 H 1.08997 * 109.47205 * 313.69442 * 3 2 1 25 25 H 1.08998 * 109.47498 * 73.69606 * 3 2 1 26 26 H 1.08998 * 109.47154 * 62.88432 * 6 4 2 27 27 H 1.09001 * 109.47326 * 182.88655 * 6 4 2 28 28 H 1.00898 * 110.99881 * 63.74277 * 7 6 4 29 29 H 1.09002 * 109.46921 * 300.00227 * 8 7 6 30 30 H 1.08997 * 109.47176 * 59.99934 * 8 7 6 31 31 H 0.97001 * 119.99924 * 180.02562 * 12 11 9 32 32 H 1.09001 * 115.55096 * 211.92898 * 17 4 2 33 33 H 1.08996 * 117.49722 * 215.00904 * 18 17 4 34 34 H 1.09002 * 117.49632 * 0.02562 * 18 17 4 35 35 H 1.08995 * 117.50209 * 359.97438 * 19 17 4 36 36 H 1.09007 * 117.49578 * 144.99571 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 3.0209 -0.4570 1.3404 6 6 1.1306 -0.5044 2.3724 7 7 1.1000 0.9373 2.6525 8 6 0.4323 1.2110 3.9320 9 6 0.4196 2.6967 4.1844 10 1 0.8637 3.3701 3.4663 11 6 -0.1578 3.1961 5.3325 12 7 -0.6981 2.3758 6.2072 13 14 -0.1728 5.0375 5.6456 14 1 0.4944 5.7367 4.5182 15 1 -1.5764 5.5088 5.7599 16 1 0.5522 5.3309 6.9080 17 6 1.9691 -2.2587 0.8034 18 6 1.3810 -2.6698 -0.5479 19 6 2.8917 -2.7486 -0.3145 20 1 -0.3634 0.5335 0.8782 21 1 -0.3633 0.4940 -0.9013 22 1 -0.3633 -1.0274 0.0227 23 1 3.0578 1.3528 -0.2434 24 1 1.4629 1.9651 -0.7430 25 1 1.8563 1.8141 0.9863 26 1 0.1169 -0.8603 2.1880 27 1 1.5507 -1.0320 3.2287 28 1 0.6588 1.4428 1.8990 29 1 -0.5922 0.8406 3.8937 30 1 0.9699 0.7100 4.7369 31 1 -1.1047 2.7271 7.0147 32 1 1.8036 -2.9269 1.6485 33 1 0.8285 -3.6083 -0.5918 34 1 1.0132 -1.8766 -1.1989 35 1 3.5171 -2.0075 -0.8121 36 1 3.3332 -3.7392 -0.2047 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308316035.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:53 Heat of formation + Delta-G solvation = 26.900732 kcal Electronic energy + Delta-G solvation = -14691.123431 eV Core-core repulsion = 12403.977009 eV Total energy + Delta-G solvation = -2287.146422 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.52386 -37.15202 -35.78750 -34.24396 -30.77692 -28.57815 -28.26404 -24.94069 -23.57407 -23.04738 -22.76694 -20.35278 -18.66964 -17.49575 -16.95417 -16.49138 -16.14541 -15.47261 -15.38526 -14.65247 -14.45172 -14.04686 -13.72310 -13.34706 -13.11917 -12.80576 -12.72083 -12.59389 -12.50546 -12.35201 -12.07723 -12.04593 -11.76531 -11.38011 -10.98973 -10.73462 -10.69154 -9.34460 -9.02147 -8.27061 -6.39237 1.38737 1.39684 1.53603 2.36649 2.95604 3.06259 3.10114 3.47498 3.99177 4.12388 4.16399 4.35172 4.36691 4.42566 4.50186 4.61552 4.63974 4.87300 4.93401 4.94635 4.96368 5.02455 5.07821 5.18017 5.19949 5.30908 5.38458 5.53419 5.55677 5.95876 6.14265 6.15257 6.33559 6.62614 6.81204 7.32205 8.84957 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054249 B = 0.006544 C = 0.006210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.012349 B = 4277.791478 C = 4507.600898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.527 5.527 3 C 0.003 3.997 4 C 0.125 3.875 5 H 0.077 0.923 6 C 0.035 3.965 7 N -0.686 5.686 8 C 0.207 3.793 9 C -0.536 4.536 10 H 0.064 0.936 11 C 0.001 3.999 12 N -0.934 5.934 13 Si 0.976 3.024 14 H -0.262 1.262 15 H -0.276 1.276 16 H -0.277 1.277 17 C -0.163 4.163 18 C -0.164 4.164 19 C -0.160 4.160 20 H 0.007 0.993 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.023 0.977 27 H 0.056 0.944 28 H 0.337 0.663 29 H -0.043 1.043 30 H -0.002 1.002 31 H 0.266 0.734 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.023 -6.799 -13.521 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.250 5.250 3 C -0.145 4.145 4 C 0.016 3.984 5 H 0.095 0.905 6 C -0.096 4.096 7 N -0.321 5.321 8 C 0.079 3.921 9 C -0.574 4.574 10 H 0.082 0.918 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.800 3.200 14 H -0.186 1.186 15 H -0.202 1.202 16 H -0.203 1.203 17 C -0.182 4.182 18 C -0.201 4.201 19 C -0.196 4.196 20 H 0.026 0.974 21 H 0.099 0.901 22 H 0.095 0.905 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.159 0.841 29 H -0.026 1.026 30 H 0.016 0.984 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.721 -7.005 -13.529 15.950 hybrid contribution -1.434 0.933 1.361 2.186 sum 3.286 -6.072 -12.168 13.990 Atomic orbital electron populations 1.22587 0.88047 1.02351 1.00292 1.62297 1.07567 1.13988 1.41146 1.22760 1.00964 0.88989 1.01806 1.21119 0.97800 0.92556 0.86903 0.90528 1.22590 0.98499 0.89720 0.98823 1.60995 1.58781 1.07165 1.05164 1.19218 0.89680 0.95845 0.87342 1.21530 1.37176 0.92708 1.05993 0.91823 1.25989 0.94503 1.03705 0.95519 1.70105 1.39167 1.36958 1.11218 0.85240 0.77990 0.78442 0.78359 1.18554 1.20176 1.20298 1.22200 1.08152 0.94332 0.93549 1.23028 0.96159 1.02620 0.98289 1.22873 0.93276 1.02189 1.01310 0.97440 0.90060 0.90520 0.91110 0.90886 0.93581 0.95844 0.92505 0.84064 1.02575 0.98413 0.92532 0.88033 0.88762 0.87552 0.89084 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 7.25 127.69 0.93 1.35 16 2 N -0.53 -14.38 3.71 -923.25 -3.42 -17.80 16 3 C 0.00 0.09 9.12 127.69 1.16 1.25 16 4 C 0.13 3.71 2.48 44.91 0.11 3.82 16 5 H 0.08 2.42 7.86 -2.38 -0.02 2.40 16 6 C 0.03 1.28 4.47 86.30 0.39 1.67 16 7 N -0.69 -30.24 5.09 -517.95 -2.64 -32.88 16 8 C 0.21 11.43 5.42 85.56 0.46 11.89 16 9 C -0.54 -31.09 9.32 25.60 0.24 -30.85 16 10 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 11 C 0.00 0.06 5.46 84.65 0.46 0.53 16 12 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 13 Si 0.98 44.54 29.54 68.60 2.03 46.56 16 14 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 15 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 17 C -0.16 -4.02 5.58 -10.79 -0.06 -4.08 16 18 C -0.16 -3.47 8.67 30.62 0.27 -3.20 16 19 C -0.16 -3.29 10.24 30.62 0.31 -2.97 16 20 H 0.01 0.24 4.99 -2.39 -0.01 0.22 16 21 H 0.08 1.87 8.12 -2.38 -0.02 1.85 16 22 H 0.08 1.94 6.29 -2.39 -0.02 1.93 16 23 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 24 H 0.07 1.78 8.01 -2.39 -0.02 1.76 16 25 H 0.05 1.56 4.68 -2.39 -0.01 1.55 16 26 H 0.02 0.88 6.65 -2.39 -0.02 0.86 16 27 H 0.06 2.20 8.10 -2.39 -0.02 2.18 16 28 H 0.34 14.16 4.18 -89.70 -0.38 13.78 16 29 H -0.04 -2.59 8.14 -2.39 -0.02 -2.61 16 30 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.10 2.49 8.06 -2.39 -0.02 2.47 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.11 2.38 5.89 -2.39 -0.01 2.37 16 35 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -62.89 278.75 1.19 -61.70 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.67 Total: 19.92 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 4.27 Total: -20.60 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -5.78 Total: -107.58 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -62.89 1.19 -61.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308316035.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.598 kcal (2) G-P(sol) polarization free energy of solvation -62.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds