Wall clock time and date at job start Mon Mar 30 2020 02:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46900 * 110.99709 * 2 1 4 4 C 1.46899 * 110.99831 * 123.95190 * 2 1 3 5 5 H 1.09000 * 109.47232 * 33.87512 * 4 2 1 6 6 C 1.52994 * 109.47319 * 273.87026 * 4 2 1 7 7 N 1.46900 * 109.47244 * 56.39089 * 6 4 2 8 8 C 1.46904 * 111.00371 * 171.68596 * 7 6 4 9 9 C 1.50697 * 109.47099 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00296 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99584 * 179.97438 * 9 8 7 12 12 N 1.31508 * 119.99990 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99496 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47449 * 90.00198 * 13 11 9 15 15 H 1.48504 * 109.46832 * 210.00021 * 13 11 9 16 16 H 1.48497 * 109.47397 * 329.99501 * 13 11 9 17 17 C 1.53003 * 109.46758 * 153.87023 * 4 2 1 18 18 C 1.52991 * 117.49972 * 3.14573 * 17 4 2 19 19 C 1.53001 * 117.49818 * 294.48406 * 17 4 2 20 20 H 1.09001 * 109.47079 * 300.99648 * 1 2 3 21 21 H 1.09000 * 109.47089 * 61.00146 * 1 2 3 22 22 H 1.09007 * 109.46447 * 180.99797 * 1 2 3 23 23 H 1.08994 * 109.47143 * 186.84770 * 3 2 1 24 24 H 1.09001 * 109.47274 * 306.85092 * 3 2 1 25 25 H 1.09008 * 109.47207 * 66.84903 * 3 2 1 26 26 H 1.09004 * 109.47640 * 296.38839 * 6 4 2 27 27 H 1.09004 * 109.47481 * 176.38787 * 6 4 2 28 28 H 1.00901 * 110.99613 * 295.63858 * 7 6 4 29 29 H 1.09000 * 109.46604 * 299.99881 * 8 7 6 30 30 H 1.09004 * 109.46762 * 59.99619 * 8 7 6 31 31 H 0.97000 * 119.99787 * 179.97438 * 12 11 9 32 32 H 1.09005 * 115.54741 * 148.81360 * 17 4 2 33 33 H 1.08997 * 117.50134 * 359.97438 * 18 17 4 34 34 H 1.09002 * 117.50136 * 145.01917 * 18 17 4 35 35 H 1.09002 * 117.49741 * 214.97916 * 19 17 4 36 36 H 1.08995 * 117.49822 * 359.97319 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.3291 -1.6013 1.3527 6 6 2.0874 0.1424 2.3653 7 7 0.7673 0.7232 2.6446 8 6 0.7687 1.4421 3.9257 9 6 -0.5988 2.0232 4.1772 10 1 -1.3897 1.8738 3.4572 11 6 -0.8401 2.7457 5.3265 12 7 0.1233 2.9280 6.2030 13 14 -2.5354 3.4653 5.6386 14 1 -3.3624 2.4804 6.3810 15 1 -2.4055 4.7078 6.4415 16 1 -3.1860 3.7801 4.3413 17 6 3.3873 -1.2996 0.7927 18 6 3.9813 -0.9017 -0.5599 19 6 3.4892 -2.3330 -0.3310 20 1 -0.3633 0.5292 0.8809 21 1 -0.3633 0.4982 -0.8988 22 1 -0.3632 -1.0276 0.0179 23 1 3.0782 1.3451 -0.1225 24 1 1.5503 1.9315 -0.8223 25 1 1.7484 1.8555 0.9450 26 1 2.8028 0.9420 2.1730 27 1 2.4169 -0.4409 3.2251 28 1 0.4710 1.3262 1.8919 29 1 1.0239 0.7516 4.7295 30 1 1.5039 2.2461 3.8902 31 1 -0.0464 3.4366 7.0114 32 1 4.0736 -1.4010 1.6335 33 1 3.3804 -0.2601 -1.2043 34 1 5.0584 -0.7417 -0.6091 35 1 4.2428 -3.1140 -0.2296 36 1 2.5647 -2.6330 -0.8242 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308316036.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:55 Heat of formation + Delta-G solvation = 47.543624 kcal Electronic energy + Delta-G solvation = -14692.532637 eV Core-core repulsion = 12406.281358 eV Total energy + Delta-G solvation = -2286.251279 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.27938 -35.86601 -34.11610 -32.24597 -29.23751 -27.41471 -26.35251 -23.30493 -22.11325 -22.04604 -21.17675 -19.14837 -16.70095 -15.85118 -15.75845 -14.88000 -14.62643 -14.23743 -13.94896 -12.89397 -12.73247 -12.63652 -12.16872 -11.79036 -11.67600 -11.42818 -11.23657 -11.10747 -10.97500 -10.77377 -10.76307 -10.54331 -10.13868 -9.90086 -9.68864 -9.19593 -8.51391 -7.90753 -7.34059 -6.06296 -4.08835 3.30004 3.35724 3.39199 3.98581 4.28708 4.40717 4.80885 5.17479 5.23163 5.29345 5.35800 5.47584 5.59544 5.69512 5.75513 5.82593 5.83173 5.93925 6.01736 6.13937 6.17710 6.28432 6.35560 6.40075 6.46877 6.51705 7.21491 7.33121 7.37488 7.39462 7.73456 8.08763 8.30414 8.54913 8.99833 9.56305 11.04787 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054221 B = 0.006553 C = 0.006214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.283287 B = 4271.600565 C = 4504.679646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.536 5.536 3 C 0.009 3.991 4 C 0.115 3.885 5 H 0.085 0.915 6 C 0.033 3.967 7 N -0.692 5.692 8 C 0.193 3.807 9 C -0.516 4.516 10 H 0.061 0.939 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.900 3.100 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.147 4.147 18 C -0.172 4.172 19 C -0.173 4.173 20 H 0.063 0.937 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.039 0.961 26 H 0.025 0.975 27 H 0.067 0.933 28 H 0.329 0.671 29 H 0.028 0.972 30 H -0.015 1.015 31 H 0.262 0.738 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.185 -6.085 -12.062 14.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.260 5.260 3 C -0.140 4.140 4 C 0.006 3.994 5 H 0.103 0.897 6 C -0.099 4.099 7 N -0.328 5.328 8 C 0.066 3.934 9 C -0.554 4.554 10 H 0.079 0.921 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.727 3.273 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.166 4.166 18 C -0.209 4.209 19 C -0.210 4.210 20 H 0.081 0.919 21 H 0.075 0.925 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.151 0.849 29 H 0.046 0.954 30 H 0.002 0.998 31 H 0.071 0.929 32 H 0.119 0.881 33 H 0.129 0.871 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.107 -6.786 -12.042 14.736 hybrid contribution -0.542 1.604 0.936 1.935 sum 4.566 -5.182 -11.106 13.079 Atomic orbital electron populations 1.22666 0.87145 1.02279 1.01657 1.62202 1.08225 1.13392 1.42135 1.22630 1.00849 0.89621 1.00887 1.21265 0.93807 0.96117 0.88222 0.89688 1.22471 0.92356 0.97537 0.97502 1.61057 1.23963 1.40879 1.06865 1.19559 0.96562 0.91572 0.85671 1.21163 0.96487 1.32388 1.05376 0.92109 1.24994 0.97255 0.96284 0.95991 1.69962 1.32178 1.40998 1.10510 0.86475 0.84079 0.78464 0.78245 1.20560 1.21261 1.19855 1.22292 0.97785 1.03995 0.92503 1.22995 0.99500 0.98406 0.99978 1.22818 1.02761 0.92194 1.03219 0.91866 0.92525 0.91942 0.91300 0.92033 0.94298 0.95673 0.91404 0.84875 0.95436 0.99757 0.92872 0.88147 0.87068 0.90227 0.89852 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.18 60.07 0.55 0.71 16 2 N -0.54 -7.68 3.69 -243.17 -0.90 -8.57 16 3 C 0.01 0.12 7.59 60.06 0.46 0.58 16 4 C 0.11 1.74 2.49 -67.71 -0.17 1.57 16 5 H 0.09 1.36 7.70 -51.93 -0.40 0.96 16 6 C 0.03 0.59 4.46 -3.83 -0.02 0.57 16 7 N -0.69 -14.88 5.29 -115.06 -0.61 -15.49 16 8 C 0.19 5.12 5.42 -4.98 -0.03 5.10 16 9 C -0.52 -14.71 9.32 -34.44 -0.32 -15.03 16 10 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 13 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 C -0.15 -1.92 5.65 -90.62 -0.51 -2.43 16 18 C -0.17 -2.04 8.73 -26.70 -0.23 -2.27 16 19 C -0.17 -2.00 10.24 -26.69 -0.27 -2.28 16 20 H 0.06 1.07 4.82 -51.93 -0.25 0.82 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.06 0.87 7.93 -51.92 -0.41 0.46 16 23 H 0.07 0.91 6.32 -51.93 -0.33 0.59 16 24 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 25 H 0.04 0.64 4.51 -51.92 -0.23 0.41 16 26 H 0.03 0.46 6.64 -51.93 -0.34 0.12 16 27 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 28 H 0.33 6.80 4.03 -39.29 -0.16 6.64 16 29 H 0.03 0.79 8.13 -51.93 -0.42 0.37 16 30 H -0.02 -0.44 8.14 -51.93 -0.42 -0.86 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.10 1.29 8.07 -51.93 -0.42 0.87 16 33 H 0.11 1.40 5.79 -51.93 -0.30 1.10 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 278.63 15.07 4.20 4.20 Total: -1.00 -29.24 278.63 -8.00 -37.24 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.77 Total: 4.11 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.64 Total: -11.97 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.77 Total: -50.32 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.24 -8.00 -37.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308316036.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.785 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds