Wall clock time and date at job start Mon Mar 30 2020 02:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00198 * 2 1 4 4 H 1.48496 * 109.47148 * 240.00093 * 3 2 1 5 5 H 1.48499 * 109.47209 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47169 * 119.99668 * 3 2 1 7 7 C 1.37873 * 119.99559 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99832 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00166 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47133 * 180.02562 * 9 7 2 11 11 S 1.81396 * 109.47122 * 179.97438 * 10 9 7 12 12 C 1.81399 * 102.99907 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.46963 * 179.97438 * 12 11 10 14 14 C 1.35450 * 126.77526 * 90.00317 * 13 12 11 15 15 C 1.41375 * 103.98779 * 179.97438 * 14 13 12 16 16 N 1.30174 * 106.39554 * 359.97438 * 15 14 13 17 17 O 1.20925 * 111.60250 * 0.02562 * 16 15 14 18 18 H 0.97003 * 119.99565 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.47306 * 59.99789 * 9 7 2 20 20 H 1.08999 * 109.46829 * 299.99840 * 9 7 2 21 21 H 1.09000 * 109.47225 * 59.99705 * 10 9 7 22 22 H 1.09003 * 109.46795 * 300.00035 * 10 9 7 23 23 H 1.08998 * 109.47096 * 59.99910 * 12 11 10 24 24 H 1.09000 * 109.47223 * 299.99673 * 12 11 10 25 25 H 1.08002 * 128.01009 * 359.97438 * 14 13 12 26 26 H 1.07997 * 126.80869 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 16 1.3381 -5.2331 0.0026 12 6 2.6647 -6.4702 0.0033 13 6 2.0630 -7.8520 0.0046 14 6 1.7390 -8.5964 -1.0796 15 6 1.2193 -9.7911 -0.5309 16 7 1.2782 -9.6575 0.7626 17 8 1.7437 -8.5872 1.0788 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8896 20 1 0.6239 -2.5566 0.8903 21 1 2.8711 -3.6040 0.8922 22 1 2.8725 -3.6048 -0.8877 23 1 3.2808 -6.3418 0.8932 24 1 3.2809 -6.3428 -0.8868 25 1 1.8516 -8.3372 -2.1220 26 1 0.8478 -10.6458 -1.0767 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379328564.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:35 Heat of formation + Delta-G solvation = 28.912503 kcal Electronic energy + Delta-G solvation = -11213.178149 eV Core-core repulsion = 8999.486983 eV Total energy + Delta-G solvation = -2213.691166 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.91659 -35.75938 -35.05675 -34.15800 -32.89012 -29.01421 -27.25199 -24.45633 -23.32189 -22.31891 -18.69243 -18.65954 -18.41445 -16.91653 -16.50100 -16.02218 -15.75327 -15.04873 -14.85260 -14.31350 -14.06729 -13.56230 -13.49946 -12.88680 -12.48830 -12.37646 -12.11087 -11.69059 -11.51293 -11.45948 -10.91300 -10.58408 -10.26843 -8.69553 -8.21557 -6.35102 -0.01226 1.01383 1.40392 1.44534 1.46228 1.54362 1.71011 2.04778 2.42221 3.12126 3.43033 3.51904 4.00704 4.13886 4.31066 4.34187 4.40067 4.60911 4.73615 4.90615 5.12758 5.40749 5.51627 5.75642 6.12064 6.79900 7.20756 7.34657 8.90005 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.106312 B = 0.004924 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 263.311810 B = 5685.615737 C = 5758.793243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.071 0.929 9 C 0.042 3.958 10 C -0.047 4.047 11 S -0.305 6.305 12 C 0.000 4.000 13 C -0.023 4.023 14 C -0.209 4.209 15 C -0.003 4.003 16 N -0.396 5.396 17 O 0.077 5.923 18 H 0.265 0.735 19 H -0.003 1.003 20 H -0.006 1.006 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.116 0.884 24 H 0.141 0.859 25 H 0.201 0.799 26 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.104 -14.817 -3.205 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.089 0.911 9 C 0.003 3.997 10 C -0.195 4.195 11 S -0.076 6.076 12 C -0.148 4.148 13 C -0.087 4.087 14 C -0.233 4.233 15 C -0.181 4.181 16 N -0.102 5.102 17 O 0.013 5.987 18 H 0.074 0.926 19 H 0.016 0.984 20 H 0.012 0.988 21 H 0.101 0.899 22 H 0.106 0.894 23 H 0.135 0.865 24 H 0.159 0.841 25 H 0.218 0.782 26 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.541 -15.641 -2.140 16.731 hybrid contribution 1.214 1.408 -0.656 1.971 sum 6.754 -14.234 -2.797 16.001 Atomic orbital electron populations 1.70118 1.08033 1.28082 1.51042 1.26036 0.95759 1.03604 0.94448 0.85402 0.78135 0.77546 0.79376 1.18787 1.21141 1.18983 1.21540 0.93852 0.91224 1.51445 0.91069 1.18691 0.93833 0.91542 0.95600 1.23395 1.00069 0.91282 1.04763 1.87452 1.18501 1.03395 1.98284 1.21702 0.97494 0.86255 1.09349 1.23849 1.02563 0.95525 0.86783 1.23011 1.04556 0.93791 1.01940 1.25688 1.01238 1.01606 0.89607 1.73891 1.16430 1.01077 1.18833 1.84804 1.59155 1.20645 1.34064 0.92639 0.98440 0.98762 0.89924 0.89399 0.86515 0.84118 0.78156 0.75761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.49 13.29 21.45 0.28 -56.20 15 2 C 0.00 0.00 5.46 84.65 0.46 0.46 15 3 Si 0.97 42.96 29.54 68.60 2.03 44.98 15 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 15 5 H -0.29 -12.52 7.11 99.48 0.71 -11.81 15 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 15 7 C -0.54 -29.69 9.11 25.60 0.23 -29.46 15 8 H 0.07 3.62 7.74 -2.91 -0.02 3.59 15 9 C 0.04 2.17 4.98 29.85 0.15 2.32 15 10 C -0.05 -1.83 5.88 71.98 0.42 -1.41 15 11 S -0.30 -10.55 21.72 -56.49 -1.23 -11.78 15 12 C 0.00 0.00 6.51 71.24 0.46 0.46 15 13 C -0.02 -0.55 6.75 25.04 0.17 -0.38 15 14 C -0.21 -4.07 11.09 22.40 0.25 -3.82 15 15 C 0.00 -0.07 12.17 85.71 1.04 0.98 15 16 N -0.40 -10.65 12.07 -59.27 -0.72 -11.36 15 17 O 0.08 2.16 11.20 71.69 0.80 2.96 15 18 H 0.26 15.08 8.31 -92.71 -0.77 14.31 15 19 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 15 20 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 15 21 H 0.08 2.99 8.14 -2.39 -0.02 2.97 15 22 H 0.09 3.09 8.14 -2.39 -0.02 3.07 15 23 H 0.12 2.37 8.14 -2.39 -0.02 2.35 15 24 H 0.14 2.41 8.14 -2.39 -0.02 2.39 15 25 H 0.20 2.69 8.06 -2.91 -0.02 2.66 15 26 H 0.23 2.57 8.06 -2.91 -0.02 2.55 15 Total: -1.00 -67.03 252.10 5.53 -61.50 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: 1.16 Total: 0.75 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 3.19 Total: -30.85 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -0.43 Total: -67.56 kcal Atomic # 8 Polarization: 2.16 SS G_CDS: 0.80 Total: 2.96 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -10.55 SS G_CDS: -1.23 Total: -11.78 kcal Total: -67.03 5.53 -61.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379328564.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.416 kcal (2) G-P(sol) polarization free energy of solvation -67.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds