Wall clock time and date at job start Mon Mar 30 2020 02:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47962 * 111.00056 * 2 1 4 4 C 1.53935 * 86.30001 * 137.63674 * 3 2 1 5 5 C 1.53004 * 113.72816 * 221.75967 * 4 3 2 6 6 N 1.46902 * 109.46879 * 184.99987 * 5 4 3 7 7 C 1.46904 * 111.00103 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47132 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47314 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47470 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00107 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99769 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00175 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99578 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47067 * 60.00304 * 14 12 10 16 16 H 1.48502 * 109.46779 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47069 * 300.00163 * 14 12 10 18 18 C 1.48308 * 111.10591 * 99.24764 * 2 1 3 19 19 H 1.09002 * 109.46754 * 60.00304 * 1 2 3 20 20 H 1.08996 * 109.46882 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47353 * 300.00377 * 1 2 3 22 22 H 1.09002 * 113.76087 * 23.26139 * 3 2 1 23 23 H 1.09005 * 113.75858 * 252.00601 * 3 2 1 24 24 H 1.09000 * 113.73561 * 90.58655 * 4 3 2 25 25 H 1.08997 * 109.47251 * 304.99531 * 5 4 3 26 26 H 1.08998 * 109.47603 * 65.00165 * 5 4 3 27 27 H 1.00907 * 111.00393 * 56.04736 * 6 5 4 28 28 H 1.08993 * 109.47361 * 300.00174 * 7 6 5 29 29 H 1.09004 * 109.46939 * 60.00286 * 7 6 5 30 30 H 1.09004 * 109.47646 * 300.00619 * 8 7 6 31 31 H 1.09003 * 109.47564 * 60.00580 * 8 7 6 32 32 H 1.09008 * 109.47344 * 300.00347 * 9 8 7 33 33 H 1.08999 * 109.47110 * 59.99727 * 9 8 7 34 34 H 0.97008 * 119.99516 * 179.97438 * 13 12 10 35 35 H 1.09003 * 113.75437 * 108.13284 * 18 2 1 36 36 H 1.08998 * 113.85723 * 336.78984 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0233 0.8818 1.0351 5 6 3.2662 1.8629 2.1838 6 7 4.3393 1.3507 3.0465 7 6 4.6011 2.2691 4.1627 8 6 5.7215 1.7027 5.0372 9 6 5.9937 2.6589 6.2001 10 6 7.0977 2.1014 7.0611 11 1 7.5588 1.1590 6.8048 12 6 7.5191 2.7944 8.1761 13 7 6.9573 3.9417 8.4885 14 14 8.8871 2.1028 9.2438 15 1 10.1198 1.9483 8.4303 16 1 9.1513 3.0311 10.3724 17 1 8.4772 0.7792 9.7777 18 6 2.0031 -0.2223 1.3656 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.3010 2.1198 0.3940 23 1 2.4444 1.6809 -0.9489 24 1 3.9470 0.5079 0.5933 25 1 3.5573 2.8320 1.7786 26 1 2.3522 1.9727 2.7674 27 1 5.1798 1.1791 2.5151 28 1 4.9015 3.2408 3.7709 29 1 3.6963 2.3821 4.7601 30 1 5.4207 0.7310 5.4290 31 1 6.6264 1.5894 4.4402 32 1 6.2944 3.6309 5.8086 33 1 5.0887 2.7719 6.7970 34 1 7.2536 4.4290 9.2732 35 1 2.4509 -1.2060 1.5072 36 1 1.3071 0.0463 2.1603 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379460172.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:50 Heat of formation + Delta-G solvation = 15.577837 kcal Electronic energy + Delta-G solvation = -13617.184263 eV Core-core repulsion = 11329.546843 eV Total energy + Delta-G solvation = -2287.637420 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.06266 -36.27937 -33.58619 -31.82049 -30.21680 -27.06690 -26.25108 -25.00000 -22.51490 -21.84690 -20.27161 -19.55625 -16.32168 -16.06343 -15.84055 -15.38027 -14.82284 -14.51579 -14.07215 -13.57751 -13.49489 -12.89848 -12.59926 -12.20309 -11.76592 -11.64497 -11.39912 -11.18812 -10.85188 -10.82973 -10.62835 -10.54899 -10.47302 -9.66977 -9.32692 -9.08831 -8.97354 -8.32273 -8.15118 -5.97602 -3.99706 3.35407 3.39296 3.42240 3.77263 4.12123 4.46532 4.50577 4.82577 4.91433 5.10618 5.22637 5.27724 5.34117 5.38112 5.45848 5.49457 5.60403 5.69183 5.75212 5.83367 5.95290 6.08624 6.18174 6.33659 6.73552 6.78292 6.82826 7.15864 7.34816 7.63824 7.70614 7.85824 8.02893 8.46259 9.07396 9.64152 11.13861 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.091447 B = 0.003926 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 306.114887 B = 7130.216585 C = 7222.287853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.490 5.490 3 C 0.003 3.997 4 C -0.109 4.109 5 C 0.066 3.934 6 N -0.690 5.690 7 C 0.059 3.941 8 C -0.107 4.107 9 C 0.022 3.978 10 C -0.520 4.520 11 H 0.055 0.945 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.276 1.276 18 C 0.014 3.986 19 H 0.065 0.935 20 H 0.069 0.931 21 H 0.034 0.966 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.099 0.901 25 H 0.030 0.970 26 H 0.069 0.931 27 H 0.338 0.662 28 H 0.024 0.976 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.013 0.987 33 H 0.016 0.984 34 H 0.260 0.740 35 H 0.089 0.911 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.466 -4.638 -15.361 19.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.212 5.212 3 C -0.126 4.126 4 C -0.129 4.129 5 C -0.065 4.065 6 N -0.320 5.320 7 C -0.070 4.070 8 C -0.145 4.145 9 C -0.016 4.016 10 C -0.558 4.558 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.114 4.114 19 H 0.084 0.916 20 H 0.088 0.912 21 H 0.053 0.947 22 H 0.087 0.913 23 H 0.105 0.895 24 H 0.117 0.883 25 H 0.048 0.952 26 H 0.087 0.913 27 H 0.155 0.845 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.754 -5.353 -15.395 19.527 hybrid contribution 0.772 1.017 0.839 1.528 sum -9.982 -4.336 -14.556 18.174 Atomic orbital electron populations 1.22847 0.89929 1.02318 1.00902 1.68567 1.08879 1.18463 1.25321 1.23990 0.97146 0.91533 0.99973 1.22962 0.98459 0.96183 0.95261 1.21968 0.96266 0.95172 0.93046 1.60559 1.11012 1.48189 1.12282 1.22129 1.00010 0.92928 0.91920 1.21622 0.95130 1.00463 0.97290 1.19064 0.96646 0.94073 0.91785 1.21233 1.18808 1.06326 1.09423 0.92694 1.25034 0.96859 0.94958 0.97687 1.69960 1.42307 1.14520 1.26894 0.86648 0.82483 0.78847 0.79965 1.20252 1.21323 1.20206 1.24048 0.96622 1.00601 0.90118 0.91590 0.91239 0.94711 0.91275 0.89511 0.88269 0.95222 0.91262 0.84488 0.95812 0.91607 0.92550 0.93637 0.96836 0.96613 0.92991 0.89237 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.65 60.07 0.58 0.49 16 2 N -0.49 -5.12 6.57 -245.54 -1.61 -6.73 16 3 C 0.00 0.03 7.54 -2.77 -0.02 0.01 16 4 C -0.11 -1.14 4.08 -89.68 -0.37 -1.51 16 5 C 0.07 0.78 5.54 -3.82 -0.02 0.76 16 6 N -0.69 -10.02 6.50 -113.78 -0.74 -10.76 16 7 C 0.06 1.02 5.68 -3.83 -0.02 1.00 16 8 C -0.11 -2.25 5.41 -26.74 -0.14 -2.40 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 11 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 14 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 C 0.01 0.15 7.54 -2.58 -0.02 0.13 16 19 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 20 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 21 H 0.03 0.29 7.63 -51.93 -0.40 -0.11 16 22 H 0.07 0.60 7.88 -51.93 -0.41 0.19 16 23 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.10 1.05 8.13 -51.93 -0.42 0.63 16 25 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.85 7.84 -51.93 -0.41 0.44 16 27 H 0.34 4.59 8.72 -39.29 -0.34 4.25 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.75 7.39 -51.93 -0.38 0.37 16 LS Contribution 295.43 15.07 4.45 4.45 Total: -1.00 -30.31 295.43 -9.30 -39.62 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.55 Total: -2.01 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -0.56 Total: -14.87 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -1.62 Total: -44.10 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.31 -9.30 -39.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379460172.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.194 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds