Wall clock time and date at job start Mon Mar 30 2020 02:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47962 * 111.00056 * 2 1 4 4 C 1.53935 * 86.30001 * 137.63674 * 3 2 1 5 5 C 1.53004 * 113.72816 * 221.75967 * 4 3 2 6 6 N 1.46902 * 109.46879 * 184.99987 * 5 4 3 7 7 C 1.46904 * 111.00103 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47132 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47314 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47470 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00107 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99769 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00175 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99578 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47067 * 60.00304 * 14 12 10 16 16 H 1.48502 * 109.46779 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47069 * 300.00163 * 14 12 10 18 18 C 1.48308 * 111.10591 * 99.24764 * 2 1 3 19 19 H 1.09002 * 109.46754 * 60.00304 * 1 2 3 20 20 H 1.08996 * 109.46882 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47353 * 300.00377 * 1 2 3 22 22 H 1.09002 * 113.76087 * 23.26139 * 3 2 1 23 23 H 1.09005 * 113.75858 * 252.00601 * 3 2 1 24 24 H 1.09000 * 113.73561 * 90.58655 * 4 3 2 25 25 H 1.08997 * 109.47251 * 304.99531 * 5 4 3 26 26 H 1.08998 * 109.47603 * 65.00165 * 5 4 3 27 27 H 1.00907 * 111.00393 * 56.04736 * 6 5 4 28 28 H 1.08993 * 109.47361 * 300.00174 * 7 6 5 29 29 H 1.09004 * 109.46939 * 60.00286 * 7 6 5 30 30 H 1.09004 * 109.47646 * 300.00619 * 8 7 6 31 31 H 1.09003 * 109.47564 * 60.00580 * 8 7 6 32 32 H 1.09008 * 109.47344 * 300.00347 * 9 8 7 33 33 H 1.08999 * 109.47110 * 59.99727 * 9 8 7 34 34 H 0.97008 * 119.99516 * 179.97438 * 13 12 10 35 35 H 1.09003 * 113.75437 * 108.13284 * 18 2 1 36 36 H 1.08998 * 113.85723 * 336.78984 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0233 0.8818 1.0351 5 6 3.2662 1.8629 2.1838 6 7 4.3393 1.3507 3.0465 7 6 4.6011 2.2691 4.1627 8 6 5.7215 1.7027 5.0372 9 6 5.9937 2.6589 6.2001 10 6 7.0977 2.1014 7.0611 11 1 7.5588 1.1590 6.8048 12 6 7.5191 2.7944 8.1761 13 7 6.9573 3.9417 8.4885 14 14 8.8871 2.1028 9.2438 15 1 10.1198 1.9483 8.4303 16 1 9.1513 3.0311 10.3724 17 1 8.4772 0.7792 9.7777 18 6 2.0031 -0.2223 1.3656 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.3010 2.1198 0.3940 23 1 2.4444 1.6809 -0.9489 24 1 3.9470 0.5079 0.5933 25 1 3.5573 2.8320 1.7786 26 1 2.3522 1.9727 2.7674 27 1 5.1798 1.1791 2.5151 28 1 4.9015 3.2408 3.7709 29 1 3.6963 2.3821 4.7601 30 1 5.4207 0.7310 5.4290 31 1 6.6264 1.5894 4.4402 32 1 6.2944 3.6309 5.8086 33 1 5.0887 2.7719 6.7970 34 1 7.2536 4.4290 9.2732 35 1 2.4509 -1.2060 1.5072 36 1 1.3071 0.0463 2.1603 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379460172.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:50 Heat of formation + Delta-G solvation = -6.651540 kcal Electronic energy + Delta-G solvation = -13618.148201 eV Core-core repulsion = 11329.546843 eV Total energy + Delta-G solvation = -2288.601358 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.86473 -37.63513 -35.48351 -33.44944 -31.44188 -28.58118 -27.03178 -26.43176 -24.10185 -22.87324 -21.92951 -20.50168 -18.47077 -17.03746 -16.88144 -16.53296 -16.29099 -15.85822 -15.25423 -14.99478 -14.60074 -14.13682 -13.83578 -13.62691 -13.31835 -13.13388 -12.69211 -12.51625 -12.32849 -12.29910 -12.09561 -11.67476 -11.61901 -11.40378 -11.34819 -11.05273 -10.54776 -9.79643 -9.33725 -8.20049 -6.31280 1.40438 1.43863 1.51779 2.41454 3.01202 3.11111 3.12980 3.63158 3.89459 4.18063 4.23714 4.32988 4.36451 4.46494 4.50248 4.56837 4.65920 4.71026 4.72837 4.82770 4.92875 4.97142 4.99945 5.10600 5.24603 5.34125 5.36103 5.52255 5.75316 5.86025 6.06242 6.08461 6.27427 6.50215 6.85694 7.38023 8.91745 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.091447 B = 0.003926 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 306.114887 B = 7130.216585 C = 7222.287853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.505 5.505 3 C 0.009 3.991 4 C -0.105 4.105 5 C 0.069 3.931 6 N -0.691 5.691 7 C 0.072 3.928 8 C -0.093 4.093 9 C 0.025 3.975 10 C -0.545 4.545 11 H 0.060 0.940 12 C -0.002 4.002 13 N -0.935 5.935 14 Si 0.966 3.034 15 H -0.266 1.266 16 H -0.282 1.282 17 H -0.267 1.267 18 C 0.013 3.987 19 H 0.075 0.925 20 H 0.071 0.929 21 H 0.037 0.963 22 H 0.077 0.923 23 H 0.095 0.905 24 H 0.099 0.901 25 H 0.036 0.964 26 H 0.067 0.933 27 H 0.345 0.655 28 H 0.023 0.977 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.051 0.949 32 H -0.009 1.009 33 H -0.009 1.009 34 H 0.264 0.736 35 H 0.084 0.916 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.242 -5.382 -16.077 19.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.227 5.227 3 C -0.120 4.120 4 C -0.124 4.124 5 C -0.060 4.060 6 N -0.322 5.322 7 C -0.057 4.057 8 C -0.131 4.131 9 C -0.013 4.013 10 C -0.583 4.583 11 H 0.078 0.922 12 C -0.200 4.200 13 N -0.575 5.575 14 Si 0.791 3.209 15 H -0.191 1.191 16 H -0.208 1.208 17 H -0.192 1.192 18 C -0.116 4.116 19 H 0.094 0.906 20 H 0.090 0.910 21 H 0.056 0.944 22 H 0.095 0.905 23 H 0.114 0.886 24 H 0.117 0.883 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.163 0.837 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.009 0.991 33 H 0.009 0.991 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.538 -6.109 -16.136 20.217 hybrid contribution 0.658 1.258 1.029 1.754 sum -9.880 -4.850 -15.107 18.691 Atomic orbital electron populations 1.22883 0.88911 1.02740 1.01527 1.68556 1.10048 1.19140 1.24968 1.24006 0.96706 0.91313 0.99993 1.22896 0.98728 0.95834 0.94953 1.21988 0.95125 0.95873 0.93052 1.60475 1.11993 1.47385 1.12359 1.21822 0.98266 0.93171 0.92462 1.21377 0.96807 0.98859 0.96044 1.18975 0.94954 0.94236 0.93135 1.21695 1.19638 1.06738 1.10265 0.92190 1.26010 0.99549 0.95196 0.99197 1.70094 1.43910 1.15892 1.27583 0.85482 0.79177 0.78330 0.77957 1.19075 1.20775 1.19169 1.24037 0.96753 1.00349 0.90448 0.90607 0.90996 0.94414 0.90464 0.88624 0.88254 0.94591 0.91463 0.83688 0.95875 0.92190 0.92930 0.93024 0.99079 0.99089 0.92745 0.89793 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.18 9.65 127.69 1.23 1.05 16 2 N -0.50 -9.67 6.57 -930.75 -6.11 -15.78 16 3 C 0.01 0.15 7.54 86.41 0.65 0.80 16 4 C -0.10 -2.01 4.08 -10.15 -0.04 -2.05 16 5 C 0.07 1.54 5.54 86.30 0.48 2.02 16 6 N -0.69 -19.13 6.50 -513.89 -3.34 -22.47 16 7 C 0.07 2.47 5.68 86.30 0.49 2.97 16 8 C -0.09 -3.89 5.41 30.59 0.17 -3.73 16 9 C 0.02 1.33 4.97 29.85 0.15 1.47 16 10 C -0.55 -31.70 9.11 25.60 0.23 -31.47 16 11 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 12 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 13 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 14 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 18 C 0.01 0.25 7.54 86.34 0.65 0.90 16 19 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 20 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 21 H 0.04 0.56 7.63 -2.39 -0.02 0.54 16 22 H 0.08 1.17 7.88 -2.39 -0.02 1.15 16 23 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 24 H 0.10 1.93 8.13 -2.39 -0.02 1.91 16 25 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 1.55 7.84 -2.39 -0.02 1.53 16 27 H 0.34 8.81 8.72 -89.69 -0.78 8.02 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 33 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.07 1.40 7.39 -2.39 -0.02 1.39 16 Total: -1.00 -64.02 295.43 -2.43 -66.46 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.24 Total: 10.10 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 4.47 Total: -27.68 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -9.17 Total: -95.62 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -64.02 -2.43 -66.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379460172.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.804 kcal (2) G-P(sol) polarization free energy of solvation -64.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds