Wall clock time and date at job start Mon Mar 30 2020 02:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46894 * 110.99884 * 2 1 4 4 C 1.52999 * 109.47739 * 63.42016 * 3 2 1 5 5 C 1.50698 * 109.47438 * 180.02562 * 4 3 2 6 6 H 1.08004 * 120.00082 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99898 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00433 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47298 * 89.99292 * 9 7 5 11 11 H 1.48497 * 109.47042 * 209.99938 * 9 7 5 12 12 H 1.48504 * 109.46553 * 329.99451 * 9 7 5 13 13 C 1.46902 * 111.00208 * 236.03923 * 2 1 3 14 14 C 1.52993 * 112.84912 * 295.83670 * 13 2 1 15 15 N 1.46905 * 109.47428 * 311.38607 * 14 13 2 16 16 C 1.53779 * 113.61221 * 164.52784 * 13 2 1 17 17 C 1.53775 * 87.08278 * 220.02121 * 16 13 2 18 18 C 1.53781 * 87.08105 * 25.43459 * 17 16 13 19 19 H 1.09004 * 109.47000 * 177.72547 * 1 2 3 20 20 H 1.09003 * 109.46844 * 57.72916 * 1 2 3 21 21 H 1.09002 * 109.47351 * 297.72713 * 1 2 3 22 22 H 1.09007 * 109.47271 * 183.42758 * 3 2 1 23 23 H 1.08999 * 109.47082 * 303.41943 * 3 2 1 24 24 H 1.08998 * 109.47179 * 300.00721 * 4 3 2 25 25 H 1.09001 * 109.46513 * 60.00180 * 4 3 2 26 26 H 0.96996 * 120.00684 * 180.02562 * 8 7 5 27 27 H 1.08999 * 109.47322 * 71.38951 * 14 13 2 28 28 H 1.09005 * 109.47082 * 191.38625 * 14 13 2 29 29 H 1.00893 * 110.99806 * 61.86463 * 15 14 13 30 30 H 1.00903 * 110.99984 * 185.82408 * 15 14 13 31 31 H 1.08998 * 113.61601 * 334.57093 * 16 13 2 32 32 H 1.09003 * 113.61361 * 105.47096 * 16 13 2 33 33 H 1.09005 * 113.61443 * 270.88742 * 17 16 13 34 34 H 1.09006 * 113.61756 * 139.98266 * 17 16 13 35 35 H 1.08995 * 113.61642 * 220.02090 * 18 17 16 36 36 H 1.09002 * 113.61667 * 89.11312 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5757 2.0789 1.2900 5 6 2.1152 3.4860 1.2896 6 1 2.6988 3.8404 0.4528 7 6 1.8638 4.3210 2.3576 8 7 1.1528 3.8897 3.3764 9 14 2.5320 6.0655 2.3569 10 1 1.5394 6.9755 1.7312 11 1 2.7883 6.4979 3.7542 12 1 3.7997 6.1095 1.5847 13 6 1.9955 -0.7661 -1.1375 14 6 1.6348 -2.2514 -1.0713 15 7 1.9454 -2.7717 0.2670 16 6 3.4840 -0.5037 -1.4207 17 6 3.1247 -0.5375 -2.9155 18 6 1.7030 -0.1213 -2.5026 19 1 -0.3633 -1.0269 -0.0408 20 1 -0.3633 0.5487 -0.8690 21 1 -0.3634 0.4781 0.9097 22 1 3.0834 1.3430 -0.0614 23 1 1.5972 1.9134 -0.8577 24 1 0.4878 2.1073 1.3514 25 1 1.9740 1.5369 2.1477 26 1 0.9756 4.4772 4.1276 27 1 0.5707 -2.3762 -1.2717 28 1 2.2115 -2.7990 -1.8168 29 1 1.4004 -2.3007 0.9734 30 1 1.8055 -3.7701 0.3083 31 1 3.8287 0.4714 -1.0765 32 1 4.1379 -1.3187 -1.1103 33 1 3.1778 -1.5336 -3.3550 34 1 3.6456 0.2155 -3.5070 35 1 0.9190 -0.6277 -3.0656 36 1 1.5608 0.9583 -2.4541 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385365373.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:11 Heat of formation + Delta-G solvation = 24.672720 kcal Electronic energy + Delta-G solvation = -14858.617950 eV Core-core repulsion = 12571.374913 eV Total energy + Delta-G solvation = -2287.243036 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.99155 -34.95895 -33.64090 -32.67718 -29.46603 -26.42811 -26.00936 -25.01034 -23.63132 -21.73533 -20.34961 -17.54762 -16.66218 -15.91127 -15.43834 -14.69530 -14.50555 -14.39583 -14.26606 -13.43590 -12.83220 -12.38590 -12.32875 -12.11368 -11.70628 -11.47232 -11.19932 -11.03572 -10.86021 -10.54447 -10.49021 -10.16193 -10.00910 -9.65549 -9.26438 -9.05940 -8.40559 -8.29268 -7.51914 -5.96486 -3.98495 3.33771 3.40020 3.43457 4.34832 4.49928 4.72535 4.86836 4.94697 5.04710 5.26215 5.39476 5.55332 5.61914 5.74304 5.78699 5.92042 5.96850 6.02275 6.07077 6.30216 6.39763 6.41251 6.48492 6.59727 6.65449 7.09589 7.35497 7.60202 7.67533 7.73553 7.87062 7.96126 8.13481 8.48121 9.08920 9.64912 11.14933 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042858 B = 0.007416 C = 0.006831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.169975 B = 3774.537643 C = 4098.204391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.520 5.520 3 C 0.059 3.941 4 C 0.028 3.972 5 C -0.520 4.520 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.095 3.905 14 C 0.097 3.903 15 N -0.839 5.839 16 C -0.130 4.130 17 C -0.141 4.141 18 C -0.173 4.173 19 H 0.048 0.952 20 H 0.018 0.982 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.019 0.981 24 H 0.015 0.985 25 H 0.024 0.976 26 H 0.260 0.740 27 H 0.020 0.980 28 H 0.069 0.931 29 H 0.354 0.646 30 H 0.330 0.670 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.133 -10.868 -9.878 14.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.243 5.243 3 C -0.067 4.067 4 C -0.009 4.009 5 C -0.559 4.559 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.003 3.997 14 C -0.035 4.035 15 N -0.369 5.369 16 C -0.167 4.167 17 C -0.179 4.179 18 C -0.213 4.213 19 H 0.067 0.933 20 H 0.037 0.963 21 H 0.096 0.904 22 H 0.087 0.913 23 H 0.037 0.963 24 H 0.034 0.966 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.088 0.912 29 H 0.169 0.831 30 H 0.141 0.859 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.952 -10.772 -9.385 14.319 hybrid contribution -1.050 1.163 -0.711 1.721 sum -0.099 -9.610 -10.096 13.939 Atomic orbital electron populations 1.22325 0.88618 0.99795 1.01402 1.61934 1.06650 1.15619 1.40063 1.22483 0.99231 0.85129 0.99882 1.19095 0.96571 0.93822 0.91431 1.21200 1.33299 0.97546 1.03889 0.92892 1.24981 0.95308 0.98436 0.95559 1.69966 1.39279 1.36106 1.07928 0.86618 0.79345 0.84976 0.77196 1.20775 1.21201 1.19896 1.22405 0.96086 0.93093 0.88078 1.21406 0.97169 0.93152 0.91759 1.58450 1.65698 1.07682 1.05086 1.23215 0.95871 1.03208 0.94424 1.22739 0.96994 1.00911 0.97220 1.23618 0.97032 1.01838 0.98822 0.93322 0.96317 0.90437 0.91328 0.96308 0.96644 0.95718 0.93052 0.96148 0.91246 0.83106 0.85880 0.88794 0.91010 0.90728 0.91724 0.92288 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 8.75 60.06 0.53 0.98 16 2 N -0.52 -9.47 4.02 -226.22 -0.91 -10.38 16 3 C 0.06 1.27 4.08 -3.83 -0.02 1.25 16 4 C 0.03 0.74 4.83 -27.88 -0.13 0.61 16 5 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 6 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.09 1.44 0.82 -130.79 -0.11 1.33 16 14 C 0.10 1.26 5.59 -3.82 -0.02 1.24 16 15 N -0.84 -11.06 9.54 -10.37 -0.10 -11.16 16 16 C -0.13 -1.95 6.97 -25.92 -0.18 -2.13 16 17 C -0.14 -1.79 7.73 -25.92 -0.20 -1.99 16 18 C -0.17 -2.45 6.42 -25.92 -0.17 -2.62 16 19 H 0.05 0.71 6.68 -51.93 -0.35 0.36 16 20 H 0.02 0.31 7.74 -51.93 -0.40 -0.09 16 21 H 0.08 1.47 6.50 -51.93 -0.34 1.13 16 22 H 0.07 1.48 5.47 -51.92 -0.28 1.19 16 23 H 0.02 0.40 6.53 -51.93 -0.34 0.07 16 24 H 0.02 0.42 6.53 -51.93 -0.34 0.08 16 25 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.02 0.26 7.24 -51.93 -0.38 -0.12 16 28 H 0.07 0.82 7.35 -51.93 -0.38 0.44 16 29 H 0.35 5.09 8.25 -39.30 -0.32 4.77 16 30 H 0.33 3.45 9.08 -39.29 -0.36 3.09 16 31 H 0.09 1.57 5.38 -51.93 -0.28 1.29 16 32 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 33 H 0.07 0.83 7.66 -51.93 -0.40 0.43 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.09 1.37 6.30 -51.93 -0.33 1.04 16 LS Contribution 276.71 15.07 4.17 4.17 Total: -1.00 -29.98 276.71 -7.55 -37.54 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.72 Total: 4.32 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -0.71 Total: -14.96 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.27 Total: -47.93 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.98 -7.55 -37.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385365373.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.209 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds