Wall clock time and date at job start Mon Mar 30 2020 02:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46894 * 110.99884 * 2 1 4 4 C 1.52999 * 109.47739 * 63.42016 * 3 2 1 5 5 C 1.50698 * 109.47438 * 180.02562 * 4 3 2 6 6 H 1.08004 * 120.00082 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99898 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00433 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47298 * 89.99292 * 9 7 5 11 11 H 1.48497 * 109.47042 * 209.99938 * 9 7 5 12 12 H 1.48504 * 109.46553 * 329.99451 * 9 7 5 13 13 C 1.46902 * 111.00208 * 236.03923 * 2 1 3 14 14 C 1.52993 * 112.84912 * 295.83670 * 13 2 1 15 15 N 1.46905 * 109.47428 * 311.38607 * 14 13 2 16 16 C 1.53779 * 113.61221 * 164.52784 * 13 2 1 17 17 C 1.53775 * 87.08278 * 220.02121 * 16 13 2 18 18 C 1.53781 * 87.08105 * 25.43459 * 17 16 13 19 19 H 1.09004 * 109.47000 * 177.72547 * 1 2 3 20 20 H 1.09003 * 109.46844 * 57.72916 * 1 2 3 21 21 H 1.09002 * 109.47351 * 297.72713 * 1 2 3 22 22 H 1.09007 * 109.47271 * 183.42758 * 3 2 1 23 23 H 1.08999 * 109.47082 * 303.41943 * 3 2 1 24 24 H 1.08998 * 109.47179 * 300.00721 * 4 3 2 25 25 H 1.09001 * 109.46513 * 60.00180 * 4 3 2 26 26 H 0.96996 * 120.00684 * 180.02562 * 8 7 5 27 27 H 1.08999 * 109.47322 * 71.38951 * 14 13 2 28 28 H 1.09005 * 109.47082 * 191.38625 * 14 13 2 29 29 H 1.00893 * 110.99806 * 61.86463 * 15 14 13 30 30 H 1.00903 * 110.99984 * 185.82408 * 15 14 13 31 31 H 1.08998 * 113.61601 * 334.57093 * 16 13 2 32 32 H 1.09003 * 113.61361 * 105.47096 * 16 13 2 33 33 H 1.09005 * 113.61443 * 270.88742 * 17 16 13 34 34 H 1.09006 * 113.61756 * 139.98266 * 17 16 13 35 35 H 1.08995 * 113.61642 * 220.02090 * 18 17 16 36 36 H 1.09002 * 113.61667 * 89.11312 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5757 2.0789 1.2900 5 6 2.1152 3.4860 1.2896 6 1 2.6988 3.8404 0.4528 7 6 1.8638 4.3210 2.3576 8 7 1.1528 3.8897 3.3764 9 14 2.5320 6.0655 2.3569 10 1 1.5394 6.9755 1.7312 11 1 2.7883 6.4979 3.7542 12 1 3.7997 6.1095 1.5847 13 6 1.9955 -0.7661 -1.1375 14 6 1.6348 -2.2514 -1.0713 15 7 1.9454 -2.7717 0.2670 16 6 3.4840 -0.5037 -1.4207 17 6 3.1247 -0.5375 -2.9155 18 6 1.7030 -0.1213 -2.5026 19 1 -0.3633 -1.0269 -0.0408 20 1 -0.3633 0.5487 -0.8690 21 1 -0.3634 0.4781 0.9097 22 1 3.0834 1.3430 -0.0614 23 1 1.5972 1.9134 -0.8577 24 1 0.4878 2.1073 1.3514 25 1 1.9740 1.5369 2.1477 26 1 0.9756 4.4772 4.1276 27 1 0.5707 -2.3762 -1.2717 28 1 2.2115 -2.7990 -1.8168 29 1 1.4004 -2.3007 0.9734 30 1 1.8055 -3.7701 0.3083 31 1 3.8287 0.4714 -1.0765 32 1 4.1379 -1.3187 -1.1103 33 1 3.1778 -1.5336 -3.3550 34 1 3.6456 0.2155 -3.5070 35 1 0.9190 -0.6277 -3.0656 36 1 1.5608 0.9583 -2.4541 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385365373.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:11 Heat of formation + Delta-G solvation = 3.097953 kcal Electronic energy + Delta-G solvation = -14859.553502 eV Core-core repulsion = 12571.374913 eV Total energy + Delta-G solvation = -2288.178588 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.23233 -36.57350 -34.89788 -34.52195 -31.38523 -27.90270 -27.32123 -26.31721 -25.35035 -22.92247 -22.13745 -18.97368 -18.43390 -17.40714 -16.76051 -16.32357 -15.92904 -15.81447 -15.57610 -14.92307 -14.29831 -14.10085 -13.76012 -13.45431 -13.22888 -13.03692 -12.85754 -12.63541 -12.38268 -12.31061 -11.80964 -11.65158 -11.38593 -11.28933 -11.16049 -10.98062 -10.51953 -9.42147 -8.96542 -8.19749 -6.30884 1.39116 1.40860 1.51981 2.40037 3.06491 3.13441 3.53948 3.75237 3.82843 3.95430 4.16634 4.30945 4.42858 4.54929 4.61209 4.68945 4.71053 4.81772 4.86885 4.92194 5.01504 5.06262 5.10184 5.20689 5.31186 5.46969 5.52232 5.71033 5.81502 6.13769 6.30440 6.39898 6.48779 6.77249 6.86453 7.37996 8.92352 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042858 B = 0.007416 C = 0.006831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.169975 B = 3774.537643 C = 4098.204391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.529 5.529 3 C 0.079 3.921 4 C 0.038 3.962 5 C -0.545 4.545 6 H 0.057 0.943 7 C 0.002 3.998 8 N -0.931 5.931 9 Si 0.965 3.035 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.264 1.264 13 C 0.087 3.913 14 C 0.101 3.899 15 N -0.850 5.850 16 C -0.138 4.138 17 C -0.123 4.123 18 C -0.172 4.172 19 H 0.078 0.922 20 H 0.020 0.980 21 H 0.049 0.951 22 H 0.066 0.934 23 H 0.016 0.984 24 H -0.006 1.006 25 H -0.010 1.010 26 H 0.264 0.736 27 H 0.031 0.969 28 H 0.090 0.910 29 H 0.346 0.654 30 H 0.346 0.654 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.592 -11.416 -11.537 16.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.252 5.252 3 C -0.048 4.048 4 C 0.001 3.999 5 C -0.583 4.583 6 H 0.075 0.925 7 C -0.196 4.196 8 N -0.571 5.571 9 Si 0.789 3.211 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.188 1.188 13 C -0.004 4.004 14 C -0.030 4.030 15 N -0.381 5.381 16 C -0.175 4.175 17 C -0.161 4.161 18 C -0.212 4.212 19 H 0.096 0.904 20 H 0.038 0.962 21 H 0.067 0.933 22 H 0.084 0.916 23 H 0.035 0.965 24 H 0.012 0.988 25 H 0.008 0.992 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.108 0.892 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.414 -11.349 -11.066 15.914 hybrid contribution -1.204 1.267 -0.174 1.756 sum 0.210 -10.082 -11.240 15.101 Atomic orbital electron populations 1.22253 0.87995 1.01303 0.99981 1.61822 1.07283 1.13664 1.42421 1.22065 0.99043 0.86835 0.96889 1.18905 0.94829 0.93485 0.92700 1.21625 1.33604 0.98790 1.04296 0.92464 1.25945 0.95401 1.03246 0.94995 1.70102 1.40380 1.37945 1.08653 0.85456 0.79040 0.79080 0.77522 1.19722 1.20608 1.18803 1.22692 0.96083 0.94237 0.87364 1.21424 0.98149 0.91355 0.92111 1.58431 1.65725 1.08915 1.05009 1.23199 0.95793 1.01898 0.96646 1.22708 0.95360 1.02504 0.95482 1.23542 0.98777 1.00532 0.98306 0.90374 0.96193 0.93257 0.91575 0.96543 0.98806 0.99163 0.92772 0.95092 0.89222 0.84095 0.84052 0.91228 0.90826 0.88104 0.91115 0.90412 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.12 8.75 127.69 1.12 2.23 16 2 N -0.53 -19.31 4.02 -869.64 -3.50 -22.81 16 3 C 0.08 3.47 4.08 86.30 0.35 3.82 16 4 C 0.04 2.10 4.83 29.85 0.14 2.25 16 5 C -0.54 -31.95 9.11 25.60 0.23 -31.71 16 6 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 7 C 0.00 0.12 5.46 84.65 0.46 0.59 16 8 N -0.93 -57.80 13.29 21.44 0.28 -57.52 16 9 Si 0.96 45.10 29.54 68.60 2.03 47.12 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 13 C 0.09 2.50 0.82 4.05 0.00 2.50 16 14 C 0.10 2.34 5.59 86.30 0.48 2.82 16 15 N -0.85 -20.76 9.54 -186.71 -1.78 -22.54 16 16 C -0.14 -3.96 6.97 31.12 0.22 -3.75 16 17 C -0.12 -2.76 7.73 31.12 0.24 -2.52 16 18 C -0.17 -4.49 6.42 31.12 0.20 -4.29 16 19 H 0.08 2.17 6.68 -2.38 -0.02 2.15 16 20 H 0.02 0.66 7.74 -2.39 -0.02 0.64 16 21 H 0.05 1.94 6.50 -2.39 -0.02 1.92 16 22 H 0.07 2.93 5.47 -2.38 -0.01 2.92 16 23 H 0.02 0.73 6.53 -2.39 -0.02 0.71 16 24 H -0.01 -0.37 6.53 -2.39 -0.02 -0.39 16 25 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 26 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 27 H 0.03 0.66 7.24 -2.39 -0.02 0.65 16 28 H 0.09 1.75 7.35 -2.38 -0.02 1.73 16 29 H 0.35 9.56 8.25 -89.70 -0.74 8.82 16 30 H 0.35 6.43 9.08 -89.69 -0.81 5.61 16 31 H 0.07 2.34 5.38 -2.39 -0.01 2.33 16 32 H 0.07 2.06 8.10 -2.39 -0.02 2.04 16 33 H 0.10 1.79 7.66 -2.38 -0.02 1.77 16 34 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.08 1.74 8.10 -2.39 -0.02 1.72 16 36 H 0.06 1.97 6.30 -2.39 -0.02 1.96 16 Total: -1.00 -65.30 276.71 0.01 -65.30 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -0.48 Total: 18.52 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 3.45 Total: -28.07 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -4.99 Total: -102.87 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -65.30 0.01 -65.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385365373.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.394 kcal (2) G-P(sol) polarization free energy of solvation -65.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds