Wall clock time and date at job start Mon Mar 30 2020 02:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47962 * 111.00037 * 2 1 4 4 C 1.53935 * 86.30001 * 222.47236 * 3 2 1 5 5 N 1.46896 * 113.73225 * 138.02731 * 4 3 2 6 6 C 1.46904 * 111.00342 * 154.99516 * 5 4 3 7 7 C 1.52991 * 109.47459 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47442 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47143 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.46946 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99953 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00120 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99950 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00216 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46803 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47387 * 120.00129 * 14 12 10 17 17 H 1.48503 * 109.47325 * 240.00374 * 14 12 10 18 18 C 1.48187 * 111.07743 * 260.70938 * 2 1 3 19 19 H 1.08997 * 109.47192 * 60.00266 * 1 2 3 20 20 H 1.09005 * 109.47086 * 179.97438 * 1 2 3 21 21 H 1.08992 * 109.47437 * 300.00082 * 1 2 3 22 22 H 1.09002 * 113.76087 * 108.09701 * 3 2 1 23 23 H 1.09005 * 113.75858 * 336.84163 * 3 2 1 24 24 H 1.09005 * 113.73320 * 269.19614 * 4 3 2 25 25 H 1.00896 * 111.00158 * 278.94560 * 5 4 3 26 26 H 1.08993 * 109.47076 * 300.00432 * 6 5 4 27 27 H 1.09009 * 109.46771 * 59.99912 * 6 5 4 28 28 H 1.09002 * 109.47796 * 300.00337 * 7 6 5 29 29 H 1.09004 * 109.47136 * 60.00109 * 7 6 5 30 30 H 1.09002 * 109.46864 * 300.00011 * 8 7 6 31 31 H 1.08995 * 109.46850 * 60.00099 * 8 7 6 32 32 H 1.08990 * 109.47539 * 299.99684 * 9 8 7 33 33 H 1.08995 * 109.47281 * 60.00223 * 9 8 7 34 34 H 0.96998 * 120.00415 * 179.97438 * 13 12 10 35 35 H 1.09005 * 113.65869 * 23.13541 * 18 2 1 36 36 H 1.09002 * 113.92722 * 251.82174 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0214 0.8825 -1.0373 5 7 3.2491 1.8230 -2.1425 6 6 4.5751 1.6206 -2.7414 7 6 4.7748 2.6153 -3.8865 8 6 6.1557 2.4041 -4.5107 9 6 6.3556 3.3993 -5.6554 10 6 7.7160 3.1916 -6.2698 11 1 8.3721 2.4260 -5.8827 12 6 8.1225 3.9782 -7.3266 13 7 7.3233 4.9101 -7.7983 14 14 9.8084 3.7203 -8.0886 15 1 10.5083 2.6184 -7.3806 16 1 9.6548 3.3688 -9.5232 17 1 10.6028 4.9692 -7.9673 18 6 2.0019 -0.2232 -1.3646 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 2.4459 1.6803 0.9483 23 1 1.3003 2.1201 -0.3924 24 1 3.9474 0.5117 -0.5975 25 1 2.5226 1.7458 -2.8384 26 1 5.3435 1.7781 -1.9846 27 1 4.6482 0.6036 -3.1271 28 1 4.0064 2.4573 -4.6434 29 1 4.7016 3.6323 -3.5013 30 1 6.9244 2.5619 -3.7541 31 1 6.2285 1.3871 -4.8960 32 1 5.5871 3.2419 -6.4121 33 1 6.2830 4.4161 -5.2697 34 1 7.6094 5.4637 -8.5416 35 1 1.3025 0.0447 -2.1566 36 1 2.4509 -1.2060 -1.5085 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385866072.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:53 Heat of formation + Delta-G solvation = 13.724242 kcal Electronic energy + Delta-G solvation = -13596.114604 eV Core-core repulsion = 11308.396806 eV Total energy + Delta-G solvation = -2287.717798 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.12275 -36.08279 -33.82228 -32.04794 -29.85036 -27.65251 -26.30120 -24.53792 -22.92130 -21.48759 -20.30211 -19.68473 -16.32387 -16.17023 -16.03199 -15.39059 -14.86041 -14.51144 -14.22500 -13.33091 -12.97687 -12.91513 -12.77029 -12.31752 -11.95448 -11.64962 -11.47510 -11.20046 -10.98183 -10.81506 -10.55419 -10.46081 -10.39973 -9.62273 -9.28397 -9.14111 -8.95833 -8.40057 -8.31798 -5.96906 -3.99032 3.32563 3.39849 3.44226 3.65346 4.11762 4.37774 4.48820 4.74975 4.86968 5.04972 5.13980 5.25571 5.38349 5.39968 5.43741 5.51305 5.56160 5.62746 5.76899 5.90630 6.02569 6.16779 6.26207 6.51352 6.74123 6.83209 6.96507 7.02734 7.22957 7.34615 7.72508 7.88063 8.04342 8.47225 9.08793 9.64887 11.14510 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.102939 B = 0.003840 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 271.941625 B = 7290.602261 C = 7380.354102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.487 5.487 3 C 0.008 3.992 4 C 0.064 3.936 5 N -0.681 5.681 6 C 0.059 3.941 7 C -0.116 4.116 8 C -0.109 4.109 9 C 0.020 3.980 10 C -0.519 4.519 11 H 0.055 0.945 12 C 0.055 3.945 13 N -0.896 5.896 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.029 4.029 19 H 0.034 0.966 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.089 0.911 23 H 0.074 0.926 24 H 0.105 0.895 25 H 0.341 0.659 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.014 0.986 33 H 0.016 0.984 34 H 0.259 0.741 35 H 0.071 0.929 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.687 -8.420 13.108 19.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 N -0.209 5.209 3 C -0.121 4.121 4 C -0.047 4.047 5 N -0.311 5.311 6 C -0.070 4.070 7 C -0.154 4.154 8 C -0.147 4.147 9 C -0.017 4.017 10 C -0.558 4.558 11 H 0.073 0.927 12 C -0.146 4.146 13 N -0.536 5.536 14 Si 0.719 3.281 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.210 1.210 18 C -0.160 4.160 19 H 0.053 0.947 20 H 0.087 0.913 21 H 0.087 0.913 22 H 0.108 0.892 23 H 0.093 0.907 24 H 0.123 0.877 25 H 0.160 0.840 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.330 -8.222 13.919 19.741 hybrid contribution 0.306 -0.374 -1.641 1.710 sum -11.025 -8.596 12.278 18.606 Atomic orbital electron populations 1.22837 0.89620 1.02236 1.01107 1.68452 1.09075 1.19351 1.24041 1.24142 0.97043 0.90860 1.00059 1.23446 0.97774 0.90375 0.93148 1.60465 1.05100 1.52402 1.13123 1.22133 0.89755 0.97886 0.97190 1.21651 0.99098 0.98982 0.95714 1.21590 0.93660 1.00444 0.99023 1.19097 0.96532 0.93899 0.92141 1.21334 1.01266 1.17662 1.15502 0.92706 1.25039 0.97276 0.95288 0.96988 1.69977 1.36184 1.21259 1.26168 0.86554 0.84468 0.78020 0.79067 1.19753 1.21053 1.21022 1.24821 0.98162 1.01565 0.91424 0.94697 0.91322 0.91346 0.89245 0.90749 0.87718 0.84023 0.91091 0.95333 0.92801 0.91639 0.93395 0.93655 0.96751 0.96596 0.93110 0.91058 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 9.65 60.06 0.58 0.51 16 2 N -0.49 -4.94 6.56 -245.78 -1.61 -6.55 16 3 C 0.01 0.08 7.78 -2.77 -0.02 0.06 16 4 C 0.06 0.68 4.37 -69.11 -0.30 0.38 16 5 N -0.68 -8.29 6.63 -107.71 -0.71 -9.01 16 6 C 0.06 0.82 5.53 -3.83 -0.02 0.80 16 7 C -0.12 -1.98 5.47 -26.73 -0.15 -2.13 16 8 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 11 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 14 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 C -0.03 -0.28 7.60 -2.65 -0.02 -0.30 16 19 H 0.03 0.28 7.62 -51.93 -0.40 -0.12 16 20 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.07 0.73 7.92 -51.93 -0.41 0.32 16 24 H 0.10 1.15 7.87 -51.93 -0.41 0.74 16 25 H 0.34 3.88 8.19 -39.29 -0.32 3.56 16 26 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 27 H 0.03 0.39 8.14 -51.92 -0.42 -0.04 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.07 0.65 7.29 -51.93 -0.38 0.27 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 295.08 15.07 4.45 4.45 Total: -1.00 -30.35 295.08 -9.31 -39.67 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -6.53 Total: -2.32 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -0.62 Total: -16.49 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -1.59 Total: -42.20 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.35 -9.31 -39.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385866072.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.390 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds