Wall clock time and date at job start Mon Mar 30 2020 02:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47962 * 111.00037 * 2 1 4 4 C 1.53935 * 86.30001 * 222.47236 * 3 2 1 5 5 N 1.46896 * 113.73225 * 138.02731 * 4 3 2 6 6 C 1.46904 * 111.00342 * 154.99516 * 5 4 3 7 7 C 1.52991 * 109.47459 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47442 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47143 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.46946 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99953 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00120 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99950 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00216 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46803 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47387 * 120.00129 * 14 12 10 17 17 H 1.48503 * 109.47325 * 240.00374 * 14 12 10 18 18 C 1.48187 * 111.07743 * 260.70938 * 2 1 3 19 19 H 1.08997 * 109.47192 * 60.00266 * 1 2 3 20 20 H 1.09005 * 109.47086 * 179.97438 * 1 2 3 21 21 H 1.08992 * 109.47437 * 300.00082 * 1 2 3 22 22 H 1.09002 * 113.76087 * 108.09701 * 3 2 1 23 23 H 1.09005 * 113.75858 * 336.84163 * 3 2 1 24 24 H 1.09005 * 113.73320 * 269.19614 * 4 3 2 25 25 H 1.00896 * 111.00158 * 278.94560 * 5 4 3 26 26 H 1.08993 * 109.47076 * 300.00432 * 6 5 4 27 27 H 1.09009 * 109.46771 * 59.99912 * 6 5 4 28 28 H 1.09002 * 109.47796 * 300.00337 * 7 6 5 29 29 H 1.09004 * 109.47136 * 60.00109 * 7 6 5 30 30 H 1.09002 * 109.46864 * 300.00011 * 8 7 6 31 31 H 1.08995 * 109.46850 * 60.00099 * 8 7 6 32 32 H 1.08990 * 109.47539 * 299.99684 * 9 8 7 33 33 H 1.08995 * 109.47281 * 60.00223 * 9 8 7 34 34 H 0.96998 * 120.00415 * 179.97438 * 13 12 10 35 35 H 1.09005 * 113.65869 * 23.13541 * 18 2 1 36 36 H 1.09002 * 113.92722 * 251.82174 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0214 0.8825 -1.0373 5 7 3.2491 1.8230 -2.1425 6 6 4.5751 1.6206 -2.7414 7 6 4.7748 2.6153 -3.8865 8 6 6.1557 2.4041 -4.5107 9 6 6.3556 3.3993 -5.6554 10 6 7.7160 3.1916 -6.2698 11 1 8.3721 2.4260 -5.8827 12 6 8.1225 3.9782 -7.3266 13 7 7.3233 4.9101 -7.7983 14 14 9.8084 3.7203 -8.0886 15 1 10.5083 2.6184 -7.3806 16 1 9.6548 3.3688 -9.5232 17 1 10.6028 4.9692 -7.9673 18 6 2.0019 -0.2232 -1.3646 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 2.4459 1.6803 0.9483 23 1 1.3003 2.1201 -0.3924 24 1 3.9474 0.5117 -0.5975 25 1 2.5226 1.7458 -2.8384 26 1 5.3435 1.7781 -1.9846 27 1 4.6482 0.6036 -3.1271 28 1 4.0064 2.4573 -4.6434 29 1 4.7016 3.6323 -3.5013 30 1 6.9244 2.5619 -3.7541 31 1 6.2285 1.3871 -4.8960 32 1 5.5871 3.2419 -6.4121 33 1 6.2830 4.4161 -5.2697 34 1 7.6094 5.4637 -8.5416 35 1 1.3025 0.0447 -2.1566 36 1 2.4509 -1.2060 -1.5085 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385866072.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:52 Heat of formation + Delta-G solvation = -8.522597 kcal Electronic energy + Delta-G solvation = -13597.079299 eV Core-core repulsion = 11308.396806 eV Total energy + Delta-G solvation = -2288.682493 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.91341 -37.39499 -35.54994 -33.80949 -31.01437 -29.13580 -27.05827 -26.22433 -23.96116 -22.85956 -21.86005 -20.71027 -18.42861 -17.07199 -17.01026 -16.50368 -16.44591 -15.78421 -15.40940 -14.58553 -14.44978 -13.91997 -13.85223 -13.64851 -13.36150 -13.17121 -12.83727 -12.65157 -12.28873 -12.23430 -12.11254 -11.89281 -11.65421 -11.36496 -11.27889 -10.95230 -10.55618 -9.89580 -9.34426 -8.19738 -6.31115 1.39997 1.40416 1.53984 2.41224 2.86415 3.13070 3.22341 3.57642 3.94401 4.14908 4.16495 4.26139 4.30551 4.45340 4.50854 4.57619 4.65150 4.69663 4.82258 4.87000 4.93050 4.95138 5.03559 5.25486 5.29365 5.31251 5.37080 5.56173 5.78989 5.87698 6.01768 6.07196 6.26411 6.41108 6.86874 7.38322 8.92362 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.102939 B = 0.003840 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 271.941625 B = 7290.602261 C = 7380.354102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.500 5.500 3 C 0.012 3.988 4 C 0.062 3.938 5 N -0.685 5.685 6 C 0.071 3.929 7 C -0.106 4.106 8 C -0.097 4.097 9 C 0.022 3.978 10 C -0.544 4.544 11 H 0.060 0.940 12 C -0.004 4.004 13 N -0.935 5.935 14 Si 0.966 3.034 15 H -0.261 1.261 16 H -0.277 1.277 17 H -0.278 1.278 18 C -0.024 4.024 19 H 0.038 0.962 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.091 0.909 23 H 0.076 0.924 24 H 0.102 0.898 25 H 0.346 0.654 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.051 0.949 32 H -0.010 1.010 33 H -0.011 1.011 34 H 0.263 0.737 35 H 0.078 0.922 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.416 -9.498 13.639 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.223 5.223 3 C -0.118 4.118 4 C -0.049 4.049 5 N -0.315 5.315 6 C -0.058 4.058 7 C -0.144 4.144 8 C -0.136 4.136 9 C -0.015 4.015 10 C -0.582 4.582 11 H 0.078 0.922 12 C -0.201 4.201 13 N -0.575 5.575 14 Si 0.791 3.209 15 H -0.185 1.185 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.154 4.154 19 H 0.057 0.943 20 H 0.092 0.908 21 H 0.093 0.907 22 H 0.110 0.890 23 H 0.094 0.906 24 H 0.120 0.880 25 H 0.165 0.835 26 H 0.090 0.910 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.008 0.992 33 H 0.007 0.993 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.072 -9.313 14.467 20.460 hybrid contribution 0.169 -0.019 -1.794 1.802 sum -10.902 -9.333 12.673 19.146 Atomic orbital electron populations 1.22876 0.88556 1.02795 1.01636 1.68449 1.10268 1.19289 1.24257 1.24117 0.96779 0.90978 0.99882 1.23470 0.98094 0.90618 0.92753 1.60410 1.04368 1.53268 1.13497 1.21893 0.90893 0.97022 0.95948 1.21474 0.96743 0.99475 0.96735 1.21401 0.96108 0.98876 0.97180 1.19032 0.95097 0.94037 0.93356 1.21786 1.02390 1.17952 1.16068 0.92187 1.26025 1.01746 0.94818 0.97519 1.70108 1.38443 1.22187 1.26787 0.85379 0.79023 0.78360 0.78162 1.18515 1.20301 1.20348 1.24796 0.97847 1.01244 0.91559 0.94294 0.90771 0.90713 0.89019 0.90600 0.87960 0.83465 0.91006 0.94559 0.92788 0.92676 0.93081 0.93040 0.99172 0.99272 0.92781 0.90366 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.14 9.65 127.69 1.23 1.09 16 2 N -0.50 -9.25 6.56 -931.52 -6.11 -15.36 16 3 C 0.01 0.22 7.78 86.41 0.67 0.89 16 4 C 0.06 1.21 4.37 46.37 0.20 1.42 16 5 N -0.68 -15.60 6.63 -494.70 -3.28 -18.88 16 6 C 0.07 1.87 5.53 86.30 0.48 2.35 16 7 C -0.11 -3.55 5.47 30.59 0.17 -3.38 16 8 C -0.10 -4.02 5.15 30.59 0.16 -3.86 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.54 -31.64 9.11 25.60 0.23 -31.41 16 11 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 12 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 13 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 14 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 15 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 C -0.02 -0.42 7.60 86.36 0.66 0.24 16 19 H 0.04 0.54 7.62 -2.39 -0.02 0.52 16 20 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 21 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.08 1.36 7.92 -2.38 -0.02 1.34 16 24 H 0.10 2.08 7.87 -2.38 -0.02 2.06 16 25 H 0.35 7.30 8.19 -89.70 -0.73 6.57 16 26 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 27 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 32 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 33 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 34 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.08 1.26 7.29 -2.38 -0.02 1.25 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -64.30 295.08 -2.39 -66.69 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.29 Total: 9.45 kcal Atomic # 6 Polarization: -35.51 SS G_CDS: 4.41 Total: -31.10 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -9.11 Total: -91.86 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -64.30 -2.39 -66.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385866072.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.166 kcal (2) G-P(sol) polarization free energy of solvation -64.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds