Wall clock time and date at job start Mon Mar 30 2020 02:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 111.00287 * 2 1 4 4 C 1.46895 * 111.00214 * 123.95317 * 2 1 3 5 5 C 1.53005 * 109.47238 * 94.28981 * 4 2 1 6 6 N 1.46898 * 112.84731 * 65.28181 * 5 4 2 7 7 C 1.46905 * 110.99955 * 54.42203 * 6 5 4 8 8 C 1.50698 * 109.46977 * 174.68636 * 7 6 5 9 9 H 1.07998 * 120.00003 * 5.03332 * 8 7 6 10 10 C 1.37882 * 120.00190 * 185.03609 * 8 7 6 11 11 N 1.31508 * 120.00266 * 174.96335 * 10 8 7 12 12 Si 1.86802 * 119.99492 * 354.96314 * 10 8 7 13 13 H 1.48492 * 109.47385 * 94.92725 * 12 10 8 14 14 H 1.48508 * 109.46834 * 214.92953 * 12 10 8 15 15 H 1.48505 * 109.47147 * 334.92249 * 12 10 8 16 16 C 1.53783 * 113.69132 * 196.55245 * 5 4 2 17 17 C 1.53780 * 87.08225 * 89.12831 * 16 5 4 18 18 C 1.53779 * 113.61261 * 294.08719 * 5 4 2 19 19 H 1.09001 * 109.46830 * 294.99685 * 1 2 3 20 20 H 1.08998 * 109.46896 * 54.98956 * 1 2 3 21 21 H 1.08997 * 109.47213 * 174.99659 * 1 2 3 22 22 H 1.08994 * 109.47172 * 183.95651 * 3 2 1 23 23 H 1.09009 * 109.46604 * 303.95676 * 3 2 1 24 24 H 1.08998 * 109.47020 * 63.95194 * 3 2 1 25 25 H 1.09000 * 109.47293 * 334.29353 * 4 2 1 26 26 H 1.09002 * 109.47340 * 214.28996 * 4 2 1 27 27 H 1.00895 * 111.00221 * 290.47160 * 6 5 4 28 28 H 1.09001 * 109.47154 * 294.68136 * 7 6 5 29 29 H 1.08997 * 109.46961 * 54.68515 * 7 6 5 30 30 H 0.97000 * 120.00210 * 179.97438 * 11 10 8 31 31 H 1.09002 * 113.61197 * 203.67906 * 16 5 4 32 32 H 1.09001 * 113.61144 * 334.57717 * 16 5 4 33 33 H 1.08999 * 113.61008 * 270.88739 * 17 16 5 34 34 H 1.08994 * 113.61415 * 139.98125 * 17 16 5 35 35 H 1.08992 * 113.61543 * 25.34942 * 18 5 4 36 36 H 1.09000 * 113.61030 * 156.24794 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 2.2790 -2.2035 0.6970 6 7 3.3514 -2.2926 -0.3030 7 6 4.5737 -1.6331 0.1757 8 6 5.6863 -1.8567 -0.8158 9 1 5.4844 -2.3607 -1.7494 10 6 6.9620 -1.4179 -0.5311 11 7 7.9522 -1.6993 -1.3495 12 14 7.2838 -0.4235 1.0172 13 1 7.7334 -1.3306 2.1036 14 1 8.3388 0.5860 0.7468 15 1 6.0349 0.2647 1.4320 16 6 2.4447 -3.1871 1.8674 17 6 0.9247 -3.4082 1.7940 18 6 1.0147 -2.9918 0.3164 19 1 -0.3633 0.4343 0.9314 20 1 -0.3633 0.5896 -0.8417 21 1 -0.3633 -1.0237 -0.0896 22 1 3.0828 1.3432 -0.0709 23 1 1.5898 1.9164 -0.8525 24 1 1.7044 1.8724 0.9233 25 1 1.2613 -0.7710 1.9432 26 1 2.9183 -0.3052 1.4899 27 1 3.0547 -1.9066 -1.1867 28 1 4.3916 -0.5637 0.2824 29 1 4.8579 -2.0515 1.1412 30 1 8.8496 -1.3902 -1.1494 31 1 3.0275 -4.0728 1.6143 32 1 2.7729 -2.7135 2.7927 33 1 0.3523 -2.7138 2.4091 34 1 0.6271 -4.4468 1.9377 35 1 0.1885 -2.3606 -0.0105 36 1 1.2065 -3.8241 -0.3608 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393512331.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:04 Heat of formation + Delta-G solvation = 33.934108 kcal Electronic energy + Delta-G solvation = -15034.448413 eV Core-core repulsion = 12747.606981 eV Total energy + Delta-G solvation = -2286.841432 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.57722 -36.15110 -33.83743 -31.83187 -27.98081 -27.63920 -26.55814 -25.15271 -23.07375 -21.83221 -20.67409 -17.92464 -16.85988 -15.65659 -15.34442 -14.99757 -14.70778 -14.26077 -13.90682 -13.50371 -12.83712 -12.47275 -12.30481 -12.08223 -12.01804 -11.61380 -11.48225 -11.33674 -10.93112 -10.84573 -10.60186 -10.27832 -10.08098 -9.64787 -9.46777 -9.15679 -8.52521 -8.21652 -7.23071 -5.98675 -3.93574 3.31053 3.38517 3.40566 4.07118 4.47527 4.96955 5.02254 5.08948 5.20811 5.24480 5.32901 5.39751 5.44084 5.59657 5.61131 5.70065 5.78968 5.85208 5.96026 6.06226 6.10882 6.22345 6.33240 6.47550 6.70587 6.74811 6.95985 7.14698 7.20038 7.25880 7.76266 8.09884 8.58209 8.78953 9.11959 9.64903 11.15192 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030435 B = 0.009994 C = 0.008753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.775401 B = 2801.056048 C = 3198.280769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.537 5.537 3 C 0.025 3.975 4 C 0.042 3.958 5 C 0.096 3.904 6 N -0.653 5.653 7 C 0.167 3.833 8 C -0.507 4.507 9 H 0.077 0.923 10 C 0.067 3.933 11 N -0.903 5.903 12 Si 0.875 3.125 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.269 1.269 16 C -0.121 4.121 17 C -0.145 4.145 18 C -0.130 4.130 19 H 0.018 0.982 20 H 0.063 0.937 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.018 0.982 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.340 0.660 28 H -0.017 1.017 29 H 0.017 0.983 30 H 0.262 0.738 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.179 2.617 6.238 16.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.261 5.261 3 C -0.123 4.123 4 C -0.088 4.088 5 C 0.003 3.997 6 N -0.283 5.283 7 C 0.039 3.961 8 C -0.545 4.545 9 H 0.095 0.905 10 C -0.134 4.134 11 N -0.542 5.542 12 Si 0.703 3.297 13 H -0.204 1.204 14 H -0.213 1.213 15 H -0.194 1.194 16 C -0.160 4.160 17 C -0.183 4.183 18 C -0.167 4.167 19 H 0.037 0.963 20 H 0.082 0.918 21 H 0.097 0.903 22 H 0.092 0.908 23 H 0.084 0.916 24 H 0.037 0.963 25 H 0.058 0.942 26 H 0.091 0.909 27 H 0.158 0.842 28 H 0.000 1.000 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.602 1.799 5.964 15.875 hybrid contribution -0.095 2.009 1.530 2.527 sum -14.697 3.808 7.494 16.931 Atomic orbital electron populations 1.22711 0.87969 1.02596 0.99741 1.61741 1.07207 1.13507 1.43617 1.22449 1.01538 0.88724 0.99631 1.22608 0.99447 0.95775 0.90986 1.22180 0.92591 0.90819 0.94111 1.60868 1.02924 1.60083 1.04381 1.19913 0.88554 0.91249 0.96339 1.21094 0.91637 1.37089 1.04675 0.90469 1.24894 0.96057 0.96024 0.96452 1.69914 1.00259 1.46404 1.37634 0.86840 0.78036 0.80643 0.84226 1.20402 1.21307 1.19398 1.22961 0.95493 1.00144 0.97403 1.22764 0.97233 1.00724 0.97556 1.23175 0.97404 1.00120 0.96030 0.96304 0.91796 0.90328 0.90813 0.91588 0.96329 0.94218 0.90877 0.84168 0.99979 0.96524 0.92844 0.88986 0.92645 0.91209 0.91764 0.91321 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.23 60.06 0.55 0.77 16 2 N -0.54 -8.13 4.81 -251.26 -1.21 -9.34 16 3 C 0.02 0.36 9.37 60.07 0.56 0.92 16 4 C 0.04 0.67 4.27 -3.82 -0.02 0.66 16 5 C 0.10 1.65 0.80 -130.79 -0.11 1.54 16 6 N -0.65 -13.92 6.31 -100.39 -0.63 -14.56 16 7 C 0.17 4.13 3.81 -4.97 -0.02 4.11 16 8 C -0.51 -14.81 9.91 -34.44 -0.34 -15.15 16 9 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 10 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 11 N -0.90 -28.29 13.96 55.43 0.77 -27.51 16 12 Si 0.87 22.01 27.48 -169.99 -4.67 17.34 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.27 -6.49 6.53 56.52 0.37 -6.13 16 16 C -0.12 -1.94 7.02 -25.92 -0.18 -2.12 16 17 C -0.14 -1.87 7.73 -25.92 -0.20 -2.07 16 18 C -0.13 -1.87 7.38 -25.92 -0.19 -2.06 16 19 H 0.02 0.21 8.04 -51.93 -0.42 -0.21 16 20 H 0.06 0.70 8.10 -51.93 -0.42 0.27 16 21 H 0.08 0.91 4.81 -51.93 -0.25 0.66 16 22 H 0.07 1.22 7.85 -51.93 -0.41 0.81 16 23 H 0.07 0.83 8.11 -51.92 -0.42 0.41 16 24 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.04 0.57 6.83 -51.93 -0.35 0.22 16 26 H 0.07 1.34 6.00 -51.93 -0.31 1.02 16 27 H 0.34 7.35 8.86 -39.29 -0.35 7.00 16 28 H -0.02 -0.43 5.66 -51.93 -0.29 -0.72 16 29 H 0.02 0.42 7.10 -51.93 -0.37 0.05 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 32 H 0.05 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.07 0.82 7.61 -51.93 -0.40 0.43 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.90 4.52 -51.93 -0.23 0.66 16 36 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 278.82 15.07 4.20 4.20 Total: -1.00 -30.66 278.82 -7.50 -38.16 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.93 Total: 3.24 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -0.04 Total: -11.53 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -1.07 Total: -51.41 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.66 -7.50 -38.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393512331.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.097 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds