Wall clock time and date at job start Mon Mar 30 2020 02:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 111.00287 * 2 1 4 4 C 1.46895 * 111.00214 * 123.95317 * 2 1 3 5 5 C 1.53005 * 109.47238 * 94.28981 * 4 2 1 6 6 N 1.46898 * 112.84731 * 65.28181 * 5 4 2 7 7 C 1.46905 * 110.99955 * 54.42203 * 6 5 4 8 8 C 1.50698 * 109.46977 * 174.68636 * 7 6 5 9 9 H 1.07998 * 120.00003 * 5.03332 * 8 7 6 10 10 C 1.37882 * 120.00190 * 185.03609 * 8 7 6 11 11 N 1.31508 * 120.00266 * 174.96335 * 10 8 7 12 12 Si 1.86802 * 119.99492 * 354.96314 * 10 8 7 13 13 H 1.48492 * 109.47385 * 94.92725 * 12 10 8 14 14 H 1.48508 * 109.46834 * 214.92953 * 12 10 8 15 15 H 1.48505 * 109.47147 * 334.92249 * 12 10 8 16 16 C 1.53783 * 113.69132 * 196.55245 * 5 4 2 17 17 C 1.53780 * 87.08225 * 89.12831 * 16 5 4 18 18 C 1.53779 * 113.61261 * 294.08719 * 5 4 2 19 19 H 1.09001 * 109.46830 * 294.99685 * 1 2 3 20 20 H 1.08998 * 109.46896 * 54.98956 * 1 2 3 21 21 H 1.08997 * 109.47213 * 174.99659 * 1 2 3 22 22 H 1.08994 * 109.47172 * 183.95651 * 3 2 1 23 23 H 1.09009 * 109.46604 * 303.95676 * 3 2 1 24 24 H 1.08998 * 109.47020 * 63.95194 * 3 2 1 25 25 H 1.09000 * 109.47293 * 334.29353 * 4 2 1 26 26 H 1.09002 * 109.47340 * 214.28996 * 4 2 1 27 27 H 1.00895 * 111.00221 * 290.47160 * 6 5 4 28 28 H 1.09001 * 109.47154 * 294.68136 * 7 6 5 29 29 H 1.08997 * 109.46961 * 54.68515 * 7 6 5 30 30 H 0.97000 * 120.00210 * 179.97438 * 11 10 8 31 31 H 1.09002 * 113.61197 * 203.67906 * 16 5 4 32 32 H 1.09001 * 113.61144 * 334.57717 * 16 5 4 33 33 H 1.08999 * 113.61008 * 270.88739 * 17 16 5 34 34 H 1.08994 * 113.61415 * 139.98125 * 17 16 5 35 35 H 1.08992 * 113.61543 * 25.34942 * 18 5 4 36 36 H 1.09000 * 113.61030 * 156.24794 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 2.2790 -2.2035 0.6970 6 7 3.3514 -2.2926 -0.3030 7 6 4.5737 -1.6331 0.1757 8 6 5.6863 -1.8567 -0.8158 9 1 5.4844 -2.3607 -1.7494 10 6 6.9620 -1.4179 -0.5311 11 7 7.9522 -1.6993 -1.3495 12 14 7.2838 -0.4235 1.0172 13 1 7.7334 -1.3306 2.1036 14 1 8.3388 0.5860 0.7468 15 1 6.0349 0.2647 1.4320 16 6 2.4447 -3.1871 1.8674 17 6 0.9247 -3.4082 1.7940 18 6 1.0147 -2.9918 0.3164 19 1 -0.3633 0.4343 0.9314 20 1 -0.3633 0.5896 -0.8417 21 1 -0.3633 -1.0237 -0.0896 22 1 3.0828 1.3432 -0.0709 23 1 1.5898 1.9164 -0.8525 24 1 1.7044 1.8724 0.9233 25 1 1.2613 -0.7710 1.9432 26 1 2.9183 -0.3052 1.4899 27 1 3.0547 -1.9066 -1.1867 28 1 4.3916 -0.5637 0.2824 29 1 4.8579 -2.0515 1.1412 30 1 8.8496 -1.3902 -1.1494 31 1 3.0275 -4.0728 1.6143 32 1 2.7729 -2.7135 2.7927 33 1 0.3523 -2.7138 2.4091 34 1 0.6271 -4.4468 1.9377 35 1 0.1885 -2.3606 -0.0105 36 1 1.2065 -3.8241 -0.3608 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393512331.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:04 Heat of formation + Delta-G solvation = 10.742333 kcal Electronic energy + Delta-G solvation = -15035.454084 eV Core-core repulsion = 12747.606981 eV Total energy + Delta-G solvation = -2287.847103 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.84338 -37.27647 -35.75252 -33.89349 -29.57127 -28.67195 -28.21532 -26.37817 -24.44288 -23.30763 -22.23812 -19.37171 -18.83652 -17.02163 -16.59137 -16.58182 -16.10499 -15.69778 -15.34403 -15.05455 -14.59047 -13.98789 -13.76421 -13.40091 -13.22989 -13.01293 -12.82010 -12.59580 -12.53470 -12.41527 -12.10029 -11.90337 -11.58968 -11.40408 -11.04005 -10.79286 -10.73538 -9.41104 -8.85224 -8.28900 -6.30332 1.31224 1.32678 1.44389 2.33363 2.95134 3.05171 3.65993 3.78961 3.94158 4.01835 4.11852 4.21387 4.33086 4.44245 4.54885 4.59757 4.66366 4.77144 4.83983 4.87110 4.94997 4.97331 5.06940 5.13790 5.17310 5.43711 5.48607 5.55094 5.66377 6.05973 6.06701 6.19067 6.69675 6.75623 6.91688 7.33589 8.88557 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030435 B = 0.009994 C = 0.008753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.775401 B = 2801.056048 C = 3198.280769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.558 5.558 3 C 0.028 3.972 4 C 0.050 3.950 5 C 0.081 3.919 6 N -0.664 5.664 7 C 0.187 3.813 8 C -0.520 4.520 9 H 0.033 0.967 10 C 0.007 3.993 11 N -0.949 5.949 12 Si 0.949 3.051 13 H -0.268 1.268 14 H -0.279 1.279 15 H -0.253 1.253 16 C -0.132 4.132 17 C -0.123 4.123 18 C -0.123 4.123 19 H 0.032 0.968 20 H 0.074 0.926 21 H 0.084 0.916 22 H 0.043 0.957 23 H 0.081 0.919 24 H 0.033 0.967 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.334 0.666 28 H -0.017 1.017 29 H 0.013 0.987 30 H 0.266 0.734 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.348 3.489 8.224 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.282 5.282 3 C -0.120 4.120 4 C -0.080 4.080 5 C -0.011 4.011 6 N -0.292 5.292 7 C 0.059 3.941 8 C -0.559 4.559 9 H 0.051 0.949 10 C -0.190 4.190 11 N -0.590 5.590 12 Si 0.772 3.228 13 H -0.193 1.193 14 H -0.205 1.205 15 H -0.177 1.177 16 C -0.170 4.170 17 C -0.160 4.160 18 C -0.161 4.161 19 H 0.050 0.950 20 H 0.093 0.907 21 H 0.102 0.898 22 H 0.062 0.938 23 H 0.099 0.901 24 H 0.051 0.949 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.152 0.848 28 H 0.000 1.000 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.804 2.663 7.954 18.782 hybrid contribution 0.549 1.680 0.808 1.944 sum -16.255 4.343 8.762 18.970 Atomic orbital electron populations 1.22750 0.85773 1.03326 1.00948 1.61711 1.09284 1.13781 1.43406 1.22389 0.99723 0.88844 1.01079 1.22443 0.99009 0.94630 0.91937 1.22506 0.92523 0.92366 0.93752 1.60788 1.03473 1.59619 1.05363 1.19545 0.88719 0.91335 0.94550 1.21390 0.93629 1.36653 1.04195 0.94899 1.25850 0.95629 0.97121 1.00405 1.70068 1.00954 1.47872 1.40095 0.85675 0.78577 0.79059 0.79485 1.19302 1.20466 1.17699 1.23005 0.97963 0.99059 0.96990 1.22696 0.94685 1.02356 0.96280 1.23132 0.96277 0.99465 0.97180 0.94959 0.90680 0.89776 0.93803 0.90059 0.94891 0.91871 0.93483 0.84801 0.99970 0.96866 0.92491 0.91021 0.92262 0.88995 0.90130 0.89545 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.23 127.69 1.18 1.57 16 2 N -0.56 -15.71 4.81 -948.84 -4.56 -20.28 16 3 C 0.03 0.75 9.37 127.69 1.20 1.95 16 4 C 0.05 1.50 4.27 86.31 0.37 1.87 16 5 C 0.08 2.66 0.80 4.06 0.00 2.66 16 6 N -0.66 -28.60 6.31 -471.53 -2.98 -31.57 16 7 C 0.19 9.35 3.81 85.56 0.33 9.67 16 8 C -0.52 -31.50 9.91 25.60 0.25 -31.24 16 9 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 10 C 0.01 0.41 5.47 84.66 0.46 0.88 16 11 N -0.95 -61.12 13.96 21.45 0.30 -60.82 16 12 Si 0.95 45.67 27.48 68.60 1.88 47.56 16 13 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 14 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 15 H -0.25 -11.44 6.53 99.48 0.65 -10.79 16 16 C -0.13 -3.98 7.02 31.12 0.22 -3.76 16 17 C -0.12 -2.74 7.73 31.12 0.24 -2.50 16 18 C -0.12 -3.24 7.38 31.12 0.23 -3.01 16 19 H 0.03 0.59 8.04 -2.39 -0.02 0.57 16 20 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 21 H 0.08 1.62 4.81 -2.39 -0.01 1.61 16 22 H 0.04 1.43 7.85 -2.39 -0.02 1.41 16 23 H 0.08 1.90 8.11 -2.38 -0.02 1.88 16 24 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 1.59 6.83 -2.39 -0.02 1.58 16 26 H 0.05 1.65 6.00 -2.39 -0.01 1.64 16 27 H 0.33 14.79 8.86 -89.70 -0.79 14.00 16 28 H -0.02 -0.86 5.66 -2.39 -0.01 -0.87 16 29 H 0.01 0.67 7.10 -2.39 -0.02 0.65 16 30 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 31 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 33 H 0.09 1.70 7.61 -2.39 -0.02 1.69 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.97 4.52 -2.39 -0.01 1.96 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -67.80 278.82 -0.68 -68.48 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.20 Total: 18.55 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 4.48 Total: -21.91 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -7.24 Total: -112.67 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.88 Total: 47.56 kcal Total: -67.80 -0.68 -68.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393512331.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.218 kcal (2) G-P(sol) polarization free energy of solvation -67.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds