Wall clock time and date at job start Mon Mar 30 2020 02:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00146 * 2 1 4 4 C 1.52997 * 109.46952 * 293.95695 * 3 2 1 5 5 C 1.53003 * 109.47332 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47332 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47035 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00100 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99627 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00289 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99575 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47052 * 60.00406 * 11 9 7 13 13 H 1.48502 * 109.47069 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47465 * 300.00195 * 11 9 7 15 15 C 1.46903 * 111.00000 * 123.95374 * 2 1 3 16 16 C 1.53506 * 114.17334 * 56.04402 * 15 2 1 17 17 N 1.47481 * 87.93471 * 139.67202 * 16 15 2 18 18 C 1.47488 * 87.83530 * 332.99146 * 17 16 15 19 19 H 1.09002 * 109.47004 * 296.04497 * 1 2 3 20 20 H 1.08997 * 109.47132 * 56.04704 * 1 2 3 21 21 H 1.09003 * 109.46835 * 176.04935 * 1 2 3 22 22 H 1.09005 * 109.47111 * 53.94803 * 3 2 1 23 23 H 1.09002 * 109.47502 * 173.95082 * 3 2 1 24 24 H 1.09006 * 109.47084 * 299.99953 * 4 3 2 25 25 H 1.09002 * 109.47517 * 59.99396 * 4 3 2 26 26 H 1.08996 * 109.46483 * 299.99663 * 5 4 3 27 27 H 1.09002 * 109.47381 * 59.99229 * 5 4 3 28 28 H 1.08999 * 109.46754 * 299.99739 * 6 5 4 29 29 H 1.09002 * 109.47517 * 59.99312 * 6 5 4 30 30 H 0.96998 * 119.99830 * 180.02562 * 10 9 7 31 31 H 1.09007 * 113.38504 * 282.96589 * 15 2 1 32 32 H 1.09007 * 113.47650 * 24.90984 * 16 15 2 33 33 H 1.08997 * 113.53552 * 254.44705 * 16 15 2 34 34 H 1.00901 * 110.99857 * 84.68111 * 17 16 15 35 35 H 1.08997 * 113.47731 * 141.77388 * 18 17 16 36 36 H 1.09001 * 113.47471 * 272.24480 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 6 2.1803 3.4856 -1.3186 6 6 1.8168 4.1714 -2.6371 7 6 2.3569 5.5783 -2.6371 8 1 2.9042 5.9466 -1.7820 9 6 2.1522 6.3952 -3.7288 10 7 1.4852 5.9469 -4.7697 11 14 2.8210 8.1394 -3.7285 12 1 4.2980 8.1030 -3.5796 13 1 2.4683 8.8050 -5.0083 14 1 2.2279 8.8969 -2.5973 15 6 1.9955 -0.7660 1.1376 16 6 1.4904 -2.2139 1.2081 17 7 2.8538 -2.6138 1.6035 18 6 3.3518 -1.4340 0.8718 19 1 -0.3633 0.4512 0.9233 20 1 -0.3633 0.5739 -0.8524 21 1 -0.3633 -1.0253 -0.0708 22 1 1.5610 1.9274 0.8309 23 1 3.0798 1.3444 0.1083 24 1 2.0657 1.5014 -2.1492 25 1 0.5471 2.0844 -1.4265 26 1 1.7463 4.0417 -0.4877 27 1 3.2646 3.4582 -1.2105 28 1 2.2511 3.6151 -3.4677 29 1 0.7325 4.1987 -2.7456 30 1 1.3415 6.5215 -5.5379 31 1 1.9409 -0.2278 2.0840 32 1 1.1836 -2.6143 0.2418 33 1 0.7466 -2.3779 1.9877 34 1 2.9883 -2.5059 2.5977 35 1 4.1855 -0.9361 1.3668 36 1 3.5416 -1.6263 -0.1842 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395392012.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:49 Heat of formation + Delta-G solvation = 23.257784 kcal Electronic energy + Delta-G solvation = -13930.758337 eV Core-core repulsion = 11643.453945 eV Total energy + Delta-G solvation = -2287.304392 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.13853 -36.62959 -34.07048 -32.08025 -28.74082 -27.39060 -26.00609 -25.19455 -23.41194 -21.00595 -20.24746 -19.87895 -16.71514 -16.23372 -15.99113 -15.20561 -14.77821 -14.39825 -14.09759 -13.38288 -12.83601 -12.64887 -12.57112 -12.42069 -11.92428 -11.75923 -11.61163 -11.26661 -10.93383 -10.69064 -10.48165 -10.47172 -10.31911 -9.59586 -9.28491 -9.06228 -8.87490 -8.35614 -8.31001 -5.96451 -3.98782 3.34851 3.39091 3.41588 3.89246 3.95323 4.15415 4.48658 4.68781 5.11898 5.22280 5.32583 5.35559 5.39027 5.43939 5.55427 5.60667 5.65868 5.70676 5.87946 5.94583 5.95028 6.15130 6.26016 6.52808 6.81776 6.94564 6.99267 7.06050 7.11157 7.25173 7.72073 7.88328 8.04563 8.47334 9.08493 9.64940 11.14881 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.074337 B = 0.004511 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.574300 B = 6205.285151 C = 6381.448282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.527 5.527 3 C 0.055 3.945 4 C -0.113 4.113 5 C -0.109 4.109 6 C 0.022 3.978 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.056 3.944 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.003 3.997 16 C 0.024 3.976 17 N -0.651 5.651 18 C 0.028 3.972 19 H 0.021 0.979 20 H 0.077 0.923 21 H 0.065 0.935 22 H 0.029 0.971 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.016 0.984 29 H 0.014 0.986 30 H 0.260 0.740 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.333 0.667 35 H 0.066 0.934 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.406 -13.521 12.101 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.252 5.252 3 C -0.072 4.072 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.016 4.016 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.107 4.107 16 C -0.106 4.106 17 N -0.277 5.277 18 C -0.103 4.103 19 H 0.040 0.960 20 H 0.096 0.904 21 H 0.083 0.917 22 H 0.047 0.953 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.083 0.917 34 H 0.147 0.853 35 H 0.085 0.915 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.084 -14.442 11.061 18.191 hybrid contribution -0.253 2.391 1.254 2.712 sum -0.337 -12.051 12.316 17.234 Atomic orbital electron populations 1.22409 0.87482 1.01876 1.00971 1.62348 1.07919 1.14798 1.40105 1.22249 0.99780 0.86751 0.98437 1.21672 1.00836 0.96880 0.95729 1.21600 0.99346 0.92943 1.00848 1.19082 0.96682 0.94636 0.91153 1.21255 1.34900 0.98055 1.01746 0.92853 1.25028 0.95349 0.98451 0.95647 1.69955 1.41000 1.36544 1.06052 0.86673 0.79440 0.84797 0.77170 1.20252 1.21284 1.20305 1.24786 0.97629 0.94838 0.93475 1.23645 0.92389 0.92183 1.02431 1.65631 1.08256 1.41268 1.12541 1.23639 0.95464 0.89537 1.01636 0.96004 0.90401 0.91653 0.95267 0.91101 0.91633 0.92535 0.93777 0.93479 0.96578 0.96764 0.92988 0.91670 0.87656 0.91655 0.85311 0.91503 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.14 60.06 0.55 0.79 16 2 N -0.53 -6.72 4.75 -234.55 -1.11 -7.83 16 3 C 0.06 0.79 4.95 -3.83 -0.02 0.77 16 4 C -0.11 -1.96 5.15 -26.73 -0.14 -2.10 16 5 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 6 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 11 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 15 C 0.00 0.03 3.45 -67.50 -0.23 -0.20 16 16 C 0.02 0.22 7.20 -7.54 -0.05 0.17 16 17 N -0.65 -6.39 8.76 -122.65 -1.07 -7.46 16 18 C 0.03 0.29 8.42 -7.53 -0.06 0.22 16 19 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 20 H 0.08 0.98 6.30 -51.93 -0.33 0.65 16 21 H 0.06 0.65 7.08 -51.93 -0.37 0.28 16 22 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 23 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 24 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.06 0.98 6.47 -51.93 -0.34 0.64 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 32 H 0.11 1.07 7.89 -51.92 -0.41 0.66 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.33 2.65 8.85 -39.29 -0.35 2.31 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 290.90 15.07 4.38 4.38 Total: -1.00 -30.46 290.90 -9.13 -39.59 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -6.40 Total: -2.76 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -0.65 Total: -16.17 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: -1.45 Total: -41.94 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.46 -9.13 -39.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395392012.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.845 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds