Wall clock time and date at job start Mon Mar 30 2020 02:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30943 * 1 3 3 Si 1.86804 * 120.00077 * 2 1 4 4 H 1.48494 * 109.47508 * 274.97363 * 3 2 1 5 5 H 1.48500 * 109.46761 * 34.97148 * 3 2 1 6 6 H 1.48499 * 109.46984 * 154.96972 * 3 2 1 7 7 C 1.39855 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99841 * 195.44853 * 7 2 1 9 9 C 1.40925 * 120.00304 * 15.43790 * 7 2 1 10 10 C 1.40813 * 120.22978 * 25.63615 * 9 7 2 11 11 C 1.36353 * 119.99414 * 180.02562 * 10 9 7 12 12 Cl 1.73598 * 119.75130 * 179.97438 * 11 10 9 13 13 C 1.39664 * 120.49649 * 0.25983 * 11 10 9 14 14 O 1.35707 * 119.76066 * 179.72266 * 13 11 10 15 15 C 1.38795 * 120.47163 * 359.47756 * 13 11 10 16 16 C 1.38465 * 119.99196 * 0.52152 * 15 13 11 17 17 N 1.38830 * 120.24609 * 179.76274 * 16 15 13 18 18 H 0.97000 * 120.00076 * 359.97438 * 1 2 3 19 19 H 1.07998 * 120.00464 * 0.04702 * 10 9 7 20 20 H 0.96708 * 114.00256 * 90.00282 * 14 13 11 21 21 H 1.08005 * 120.00244 * 180.28282 * 15 13 11 22 22 H 0.96995 * 119.99886 * 179.97438 * 17 16 15 23 23 H 0.97006 * 119.99261 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2435 1.6178 0.0000 4 1 2.3859 2.1072 -1.3947 5 1 1.4974 2.6200 0.8025 6 1 3.5896 1.4121 0.5924 7 6 2.0087 -1.2112 -0.0005 8 1 3.0595 -1.2281 0.2486 9 6 1.3423 -2.4095 -0.3259 10 6 0.1956 -2.3837 -1.1428 11 6 -0.4458 -3.5460 -1.4542 12 17 -1.8593 -3.5068 -2.4611 13 6 0.0225 -4.7672 -0.9642 14 8 -0.6306 -5.9143 -1.2790 15 6 1.1541 -4.8164 -0.1620 16 6 1.8208 -3.6482 0.1668 17 7 2.9503 -3.6907 0.9729 18 1 -0.4850 0.8400 0.0004 19 1 -0.1757 -1.4435 -1.5228 20 1 -0.3118 -6.3396 -2.0869 21 1 1.5122 -5.7653 0.2090 22 1 3.4147 -2.8703 1.2006 23 1 3.2748 -4.5411 1.3083 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715392.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:24 Heat of formation + Delta-G solvation = -58.605046 kcal Electronic energy + Delta-G solvation = -11861.898565 eV Core-core repulsion = 9506.535553 eV Total energy + Delta-G solvation = -2355.363012 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.16895 -37.87055 -37.02248 -35.41178 -34.11586 -30.95551 -29.28235 -26.58526 -23.26618 -22.26475 -19.28416 -19.01547 -17.83506 -16.94912 -16.44970 -16.10680 -15.23141 -15.01994 -14.37288 -13.95945 -13.72145 -13.19897 -12.84559 -12.67720 -12.45175 -12.22239 -11.86936 -11.52035 -11.15618 -10.97660 -10.55119 -9.28991 -8.63217 -8.19071 -6.11523 0.77093 1.05939 1.42927 1.49512 1.55357 1.68481 2.23700 2.70308 3.40066 3.60378 3.91647 4.39794 5.01728 5.02405 5.28644 5.40518 5.48833 5.77199 5.90748 6.09003 6.41813 6.79718 6.89875 7.05945 7.22318 7.45568 8.40405 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.033399 B = 0.011941 C = 0.009011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.147407 B = 2344.228316 C = 3106.489173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.031 3.969 3 Si 0.981 3.019 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.252 1.252 7 C -0.480 4.480 8 H 0.088 0.912 9 C 0.034 3.966 10 C -0.150 4.150 11 C -0.080 4.080 12 Cl -0.105 7.105 13 C 0.026 3.974 14 O -0.497 6.497 15 C -0.199 4.199 16 C 0.136 3.864 17 N -0.864 5.864 18 H 0.285 0.715 19 H 0.114 0.886 20 H 0.384 0.616 21 H 0.131 0.869 22 H 0.398 0.602 23 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.015 -3.122 -1.050 5.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.183 4.183 3 Si 0.803 3.197 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.175 1.175 7 C -0.510 4.510 8 H 0.106 0.894 9 C 0.029 3.971 10 C -0.172 4.172 11 C -0.109 4.109 12 Cl -0.077 7.077 13 C -0.021 4.021 14 O -0.307 6.307 15 C -0.223 4.223 16 C 0.031 3.969 17 N -0.407 5.407 18 H 0.095 0.905 19 H 0.131 0.869 20 H 0.239 0.761 21 H 0.148 0.852 22 H 0.228 0.772 23 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.332 -2.842 -0.629 4.424 hybrid contribution 0.346 0.651 -0.355 0.818 sum 3.677 -2.191 -0.985 4.392 Atomic orbital electron populations 1.69928 1.08984 1.30222 1.36709 1.26683 0.95391 1.04401 0.91786 0.85195 0.79278 0.76332 0.78940 1.19386 1.20116 1.17539 1.19440 0.97457 0.91351 1.42755 0.89438 1.17503 0.93858 0.92216 0.93524 1.20598 0.99230 0.95704 1.01637 1.20885 0.92417 0.95400 1.02182 1.98224 1.41613 1.98966 1.68898 1.17558 0.95939 0.83825 1.04782 1.84743 1.61335 1.36765 1.47834 1.20352 0.97976 0.97073 1.06923 1.17893 0.91099 0.92970 0.94912 1.41814 1.30092 1.11204 1.57545 0.90461 0.86853 0.76118 0.85168 0.77242 0.77335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.15 10.88 21.82 0.24 -42.91 14 2 C 0.03 1.51 5.18 85.22 0.44 1.95 14 3 Si 0.98 36.85 29.59 68.60 2.03 38.88 14 4 H -0.27 -10.00 7.11 99.48 0.71 -9.30 14 5 H -0.28 -10.18 7.11 99.48 0.71 -9.47 14 6 H -0.25 -8.90 7.11 99.48 0.71 -8.20 14 7 C -0.48 -23.75 8.50 23.32 0.20 -23.55 14 8 H 0.09 3.97 6.68 -2.91 -0.02 3.95 14 9 C 0.03 1.74 5.59 -21.15 -0.12 1.62 14 10 C -0.15 -7.84 8.37 22.46 0.19 -7.65 14 11 C -0.08 -3.87 6.29 22.17 0.14 -3.73 14 12 Cl -0.11 -4.50 28.46 -2.72 -0.08 -4.58 14 13 C 0.03 1.13 6.71 22.75 0.15 1.29 14 14 O -0.50 -19.11 12.92 -90.28 -1.17 -20.27 14 15 C -0.20 -8.37 9.81 22.46 0.22 -8.15 14 16 C 0.14 6.01 6.78 38.93 0.26 6.28 14 17 N -0.86 -30.51 8.98 -50.45 -0.45 -30.96 14 18 H 0.28 13.59 8.30 -92.71 -0.77 12.82 14 19 H 0.11 6.32 6.14 -2.91 -0.02 6.31 14 20 H 0.38 11.01 9.06 -74.05 -0.67 10.34 14 21 H 0.13 4.68 8.06 -2.91 -0.02 4.66 14 22 H 0.40 13.70 7.05 -92.71 -0.65 13.04 14 23 H 0.40 11.21 8.84 -92.70 -0.82 10.39 14 Total: -1.00 -58.44 223.49 1.20 -57.24 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: -0.85 Total: 34.54 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 1.49 Total: -31.94 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -0.22 Total: -73.87 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -1.17 Total: -20.27 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 2.03 Total: 38.88 kcal Atomic # 17 Polarization: -4.50 SS G_CDS: -0.08 Total: -4.58 kcal Total: -58.44 1.20 -57.24 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715392.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.365 kcal (2) G-P(sol) polarization free energy of solvation -58.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds