Wall clock time and date at job start Mon Mar 30 2020 02:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86806 * 119.99568 * 2 1 4 4 H 1.48494 * 109.47206 * 269.99706 * 3 2 1 5 5 H 1.48497 * 109.47097 * 30.00085 * 3 2 1 6 6 H 1.48499 * 109.46757 * 149.99811 * 3 2 1 7 7 C 1.39909 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99840 * 163.27558 * 7 2 1 9 9 C 1.41176 * 120.00410 * 343.27860 * 7 2 1 10 10 C 1.40837 * 120.24460 * 334.56372 * 9 7 2 11 11 C 1.37549 * 119.92137 * 180.23493 * 10 9 7 12 12 Cl 1.73601 * 119.77660 * 179.78865 * 11 10 9 13 13 C 1.38925 * 120.44182 * 359.76289 * 11 10 9 14 14 C 1.38775 * 120.50941 * 0.02562 * 13 11 10 15 15 N 1.40003 * 119.97127 * 179.97438 * 14 13 11 16 16 C 1.39058 * 120.06046 * 359.96753 * 14 13 11 17 17 O 1.35764 * 120.22082 * 180.02562 * 16 14 13 18 18 H 0.96999 * 119.99917 * 0.02562 * 1 2 3 19 19 H 1.07996 * 120.04170 * 0.02562 * 10 9 7 20 20 H 1.07998 * 119.74137 * 180.02562 * 13 11 10 21 21 H 0.96991 * 120.00184 * 179.97438 * 15 14 13 22 22 H 0.97000 * 119.99808 * 359.97261 * 15 14 13 23 23 H 0.96693 * 114.00303 * 89.99908 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6179 0.0000 4 1 2.4902 2.0465 -1.4000 5 1 1.4401 2.6527 0.7000 6 1 3.5402 1.4403 0.7001 7 6 2.0083 -1.2116 0.0005 8 1 3.0541 -1.2315 -0.2686 9 6 1.3473 -2.4083 0.3528 10 6 0.2139 -2.3733 1.1881 11 6 -0.4221 -3.5436 1.5311 12 17 -1.8155 -3.4965 2.5654 13 6 0.0429 -4.7631 1.0549 14 6 1.1554 -4.8183 0.2272 15 7 1.6147 -6.0534 -0.2458 16 6 1.8144 -3.6480 -0.1330 17 8 2.9028 -3.6981 -0.9429 18 1 -0.4850 0.8400 -0.0004 19 1 -0.1534 -1.4289 1.5617 20 1 -0.4654 -5.6751 1.3310 21 1 2.3919 -6.0925 -0.8246 22 1 1.1555 -6.8701 0.0054 23 1 2.6951 -3.6359 -1.8852 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575715411.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:55 Heat of formation + Delta-G solvation = -43.219292 kcal Electronic energy + Delta-G solvation = -11866.379878 eV Core-core repulsion = 9511.684043 eV Total energy + Delta-G solvation = -2354.695836 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.37650 -35.79692 -34.76487 -34.42777 -32.44472 -29.17450 -26.88788 -25.32990 -21.07254 -20.73746 -17.55982 -16.95678 -16.06868 -15.43209 -14.81102 -14.16701 -13.60741 -13.33522 -12.90140 -12.10799 -11.65860 -11.37436 -11.33832 -11.03985 -10.76798 -10.58101 -10.20395 -9.78513 -9.47670 -9.12762 -8.83924 -7.39211 -6.89100 -6.38397 -4.48577 2.56553 2.89216 3.03999 3.08721 3.18720 3.32443 3.86687 4.46987 4.80491 5.34099 5.79985 6.42414 6.76282 6.85779 7.02819 7.08741 7.42674 7.58732 7.77914 7.93044 8.32087 8.35782 8.59239 8.69550 8.76166 9.15108 10.05586 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.026901 B = 0.013057 C = 0.009021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.603417 B = 2143.938947 C = 3103.241022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.441 4.441 8 H 0.088 0.912 9 C 0.131 3.869 10 C -0.182 4.182 11 C 0.027 3.973 12 Cl -0.124 7.124 13 C -0.299 4.299 14 C 0.226 3.774 15 N -0.886 5.886 16 C -0.095 4.095 17 O -0.486 6.486 18 H 0.284 0.716 19 H 0.130 0.870 20 H 0.100 0.900 21 H 0.392 0.608 22 H 0.385 0.615 23 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.272 -3.195 -0.515 3.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.469 4.469 8 H 0.106 0.894 9 C 0.127 3.873 10 C -0.203 4.203 11 C 0.000 4.000 12 Cl -0.095 7.095 13 C -0.323 4.323 14 C 0.124 3.876 15 N -0.427 5.427 16 C -0.145 4.145 17 O -0.292 6.292 18 H 0.095 0.905 19 H 0.148 0.852 20 H 0.118 0.882 21 H 0.219 0.781 22 H 0.211 0.789 23 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.227 -2.997 0.141 3.009 hybrid contribution -0.077 0.424 -0.559 0.706 sum 0.150 -2.573 -0.418 2.611 Atomic orbital electron populations 1.69850 1.07653 1.29725 1.33319 1.26036 0.94786 1.01695 0.92074 0.86236 0.80693 0.80105 0.79332 1.19371 1.19965 1.18252 1.19526 0.98131 0.90385 1.38867 0.89414 1.17494 0.89745 0.91557 0.88504 1.21011 1.00033 0.95893 1.03337 1.20364 0.88903 0.95078 0.95672 1.98251 1.44284 1.99003 1.68001 1.19407 1.03639 0.95602 1.13648 1.17551 0.91754 0.85182 0.93144 1.42230 1.36296 1.05133 1.59085 1.17912 0.98091 0.91069 1.07392 1.84828 1.30347 1.95631 1.18393 0.90494 0.85210 0.88200 0.78069 0.78855 0.80294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.64 10.95 55.55 0.61 -19.04 14 2 C 0.07 1.80 5.15 -17.33 -0.09 1.71 14 3 Si 0.91 18.27 29.59 -169.99 -5.03 13.23 14 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 14 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 14 6 H -0.26 -5.20 7.11 56.52 0.40 -4.80 14 7 C -0.44 -11.47 8.71 -37.84 -0.33 -11.80 14 8 H 0.09 2.26 7.66 -52.48 -0.40 1.85 14 9 C 0.13 3.47 5.57 -106.71 -0.59 2.87 14 10 C -0.18 -4.71 8.44 -38.85 -0.33 -5.04 14 11 C 0.03 0.64 6.31 -39.58 -0.25 0.39 14 12 Cl -0.12 -2.57 28.94 -51.86 -1.50 -4.07 14 13 C -0.30 -6.73 9.66 -39.13 -0.38 -7.11 14 14 C 0.23 5.03 6.76 -83.62 -0.57 4.46 14 15 N -0.89 -15.40 9.09 32.48 0.30 -15.10 14 16 C -0.09 -2.31 6.76 -38.19 -0.26 -2.57 14 17 O -0.49 -10.72 12.03 -19.00 -0.23 -10.95 14 18 H 0.28 6.49 8.30 -40.82 -0.34 6.15 14 19 H 0.13 3.48 6.18 -52.49 -0.32 3.16 14 20 H 0.10 2.04 8.06 -52.49 -0.42 1.62 14 21 H 0.39 6.24 8.19 -40.82 -0.33 5.91 14 22 H 0.39 5.67 8.84 -40.82 -0.36 5.31 14 23 H 0.35 6.36 9.06 45.56 0.41 6.78 14 LS Contribution 225.57 15.07 3.40 3.40 Total: -1.00 -27.65 225.57 -5.81 -33.46 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -0.57 Total: 16.14 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -2.79 Total: -17.08 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.90 Total: -34.14 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.23 Total: -10.95 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -1.50 Total: -4.07 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -27.65 -5.81 -33.46 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715411.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.755 kcal (2) G-P(sol) polarization free energy of solvation -27.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds