Wall clock time and date at job start Mon Mar 30 2020 02:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86806 * 119.99568 * 2 1 4 4 H 1.48494 * 109.47206 * 269.99706 * 3 2 1 5 5 H 1.48497 * 109.47097 * 30.00085 * 3 2 1 6 6 H 1.48499 * 109.46757 * 149.99811 * 3 2 1 7 7 C 1.39909 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99840 * 163.27558 * 7 2 1 9 9 C 1.41176 * 120.00410 * 343.27860 * 7 2 1 10 10 C 1.40837 * 120.24460 * 334.56372 * 9 7 2 11 11 C 1.37549 * 119.92137 * 180.23493 * 10 9 7 12 12 Cl 1.73601 * 119.77660 * 179.78865 * 11 10 9 13 13 C 1.38925 * 120.44182 * 359.76289 * 11 10 9 14 14 C 1.38775 * 120.50941 * 0.02562 * 13 11 10 15 15 N 1.40003 * 119.97127 * 179.97438 * 14 13 11 16 16 C 1.39058 * 120.06046 * 359.96753 * 14 13 11 17 17 O 1.35764 * 120.22082 * 180.02562 * 16 14 13 18 18 H 0.96999 * 119.99917 * 0.02562 * 1 2 3 19 19 H 1.07996 * 120.04170 * 0.02562 * 10 9 7 20 20 H 1.07998 * 119.74137 * 180.02562 * 13 11 10 21 21 H 0.96991 * 120.00184 * 179.97438 * 15 14 13 22 22 H 0.97000 * 119.99808 * 359.97261 * 15 14 13 23 23 H 0.96693 * 114.00303 * 89.99908 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6179 0.0000 4 1 2.4902 2.0465 -1.4000 5 1 1.4401 2.6527 0.7000 6 1 3.5402 1.4403 0.7001 7 6 2.0083 -1.2116 0.0005 8 1 3.0541 -1.2315 -0.2686 9 6 1.3473 -2.4083 0.3528 10 6 0.2139 -2.3733 1.1881 11 6 -0.4221 -3.5436 1.5311 12 17 -1.8155 -3.4965 2.5654 13 6 0.0429 -4.7631 1.0549 14 6 1.1554 -4.8183 0.2272 15 7 1.6147 -6.0534 -0.2458 16 6 1.8144 -3.6480 -0.1330 17 8 2.9028 -3.6981 -0.9429 18 1 -0.4850 0.8400 -0.0004 19 1 -0.1534 -1.4289 1.5617 20 1 -0.4654 -5.6751 1.3310 21 1 2.3919 -6.0925 -0.8246 22 1 1.1555 -6.8701 0.0054 23 1 2.6951 -3.6359 -1.8852 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715411.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:55 Heat of formation + Delta-G solvation = -62.840174 kcal Electronic energy + Delta-G solvation = -11867.230704 eV Core-core repulsion = 9511.684043 eV Total energy + Delta-G solvation = -2355.546661 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.15896 -37.55507 -36.53873 -36.16652 -34.16878 -31.00828 -28.63698 -27.19504 -22.89173 -22.54215 -19.36781 -18.71108 -17.75669 -17.20101 -16.45856 -15.95476 -15.32244 -15.08234 -14.61293 -13.88409 -13.39944 -13.14794 -13.10320 -12.74198 -12.42758 -12.22351 -11.95887 -11.56387 -11.25087 -10.90941 -10.59542 -9.24182 -8.69422 -8.08124 -6.40665 0.74930 1.10994 1.40368 1.50182 1.53333 1.56694 2.20572 2.65594 3.30366 3.50421 4.01183 4.67376 4.95770 5.03791 5.17976 5.32263 5.62915 5.83370 5.89596 6.07385 6.45613 6.68531 6.79556 6.90297 7.26776 7.42132 8.27231 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.026901 B = 0.013057 C = 0.009021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.603417 B = 2143.938947 C = 3103.241022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.038 3.962 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.474 4.474 8 H 0.080 0.920 9 C 0.102 3.898 10 C -0.210 4.210 11 C 0.021 3.979 12 Cl -0.100 7.100 13 C -0.299 4.299 14 C 0.230 3.770 15 N -0.866 5.866 16 C -0.112 4.112 17 O -0.489 6.489 18 H 0.291 0.709 19 H 0.112 0.888 20 H 0.124 0.876 21 H 0.401 0.599 22 H 0.402 0.598 23 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.455 -3.810 -0.690 3.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.502 4.502 8 H 0.098 0.902 9 C 0.098 3.902 10 C -0.231 4.231 11 C -0.006 4.006 12 Cl -0.072 7.072 13 C -0.324 4.324 14 C 0.125 3.875 15 N -0.408 5.408 16 C -0.162 4.162 17 O -0.296 6.296 18 H 0.102 0.898 19 H 0.129 0.871 20 H 0.142 0.858 21 H 0.231 0.769 22 H 0.231 0.769 23 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 0.407 -3.667 -0.053 3.690 hybrid contribution -0.174 0.457 -0.510 0.706 sum 0.234 -3.211 -0.562 3.268 Atomic orbital electron populations 1.69894 1.08972 1.30966 1.33781 1.26812 0.95469 1.04591 0.91061 0.85186 0.79037 0.75767 0.79670 1.18365 1.18992 1.18516 1.19664 0.98009 0.91636 1.40898 0.90196 1.17874 0.90458 0.92772 0.89107 1.20889 1.01230 0.95980 1.05047 1.20526 0.89416 0.95006 0.95651 1.98246 1.42805 1.98994 1.67139 1.19706 1.03672 0.95967 1.13025 1.17598 0.91228 0.86252 0.92438 1.42114 1.36317 1.04174 1.58212 1.18068 0.98614 0.91341 1.08165 1.84749 1.29875 1.95545 1.19480 0.89778 0.87052 0.85780 0.76946 0.76889 0.78392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.50 10.95 21.82 0.24 -41.26 14 2 C 0.04 1.85 5.15 85.24 0.44 2.29 14 3 Si 0.98 37.55 29.59 68.60 2.03 39.58 14 4 H -0.26 -9.43 7.11 99.48 0.71 -8.72 14 5 H -0.27 -9.65 7.11 99.48 0.71 -8.94 14 6 H -0.26 -9.97 7.11 99.48 0.71 -9.27 14 7 C -0.47 -25.21 8.71 23.40 0.20 -25.01 14 8 H 0.08 4.21 7.66 -2.91 -0.02 4.19 14 9 C 0.10 5.48 5.57 -21.22 -0.12 5.36 14 10 C -0.21 -11.08 8.44 22.74 0.19 -10.89 14 11 C 0.02 1.00 6.31 22.27 0.14 1.14 14 12 Cl -0.10 -4.06 28.94 -2.72 -0.08 -4.14 14 13 C -0.30 -12.94 9.66 22.56 0.22 -12.72 14 14 C 0.23 9.81 6.76 38.16 0.26 10.07 14 15 N -0.87 -27.56 9.09 -51.16 -0.47 -28.02 14 16 C -0.11 -5.39 6.76 23.17 0.16 -5.24 14 17 O -0.49 -21.19 12.03 -90.91 -1.09 -22.28 14 18 H 0.29 13.44 8.30 -92.71 -0.77 12.67 14 19 H 0.11 6.18 6.18 -2.91 -0.02 6.16 14 20 H 0.12 4.69 8.06 -2.91 -0.02 4.66 14 21 H 0.40 11.61 8.19 -92.71 -0.76 10.85 14 22 H 0.40 10.39 8.84 -92.71 -0.82 9.57 14 23 H 0.36 13.02 9.06 -74.06 -0.67 12.34 14 Total: -1.00 -58.76 225.57 1.16 -57.60 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: -0.96 Total: 33.52 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 1.49 Total: -34.99 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: -0.23 Total: -69.29 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -1.09 Total: -22.28 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Atomic # 17 Polarization: -4.06 SS G_CDS: -0.08 Total: -4.14 kcal Total: -58.76 1.16 -57.60 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715411.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.239 kcal (2) G-P(sol) polarization free energy of solvation -58.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds