Wall clock time and date at job start Mon Mar 30 2020 02:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30919 * 1 3 3 Si 1.86801 * 120.00103 * 2 1 4 4 H 1.48499 * 109.47407 * 274.69405 * 3 2 1 5 5 H 1.48508 * 109.46820 * 34.69091 * 3 2 1 6 6 H 1.48497 * 109.47322 * 154.68965 * 3 2 1 7 7 C 1.39834 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00131 * 197.82705 * 7 2 1 9 9 C 1.41105 * 120.00248 * 17.82706 * 7 2 1 10 10 C 1.40900 * 120.13224 * 24.78838 * 9 7 2 11 11 C 1.37679 * 119.69061 * 180.26698 * 10 9 7 12 12 O 1.35977 * 120.02233 * 179.75652 * 11 10 9 13 13 C 1.40075 * 119.95305 * 359.48631 * 11 10 9 14 14 N 1.39053 * 119.86917 * 180.24707 * 13 11 10 15 15 C 1.39478 * 120.25911 * 0.22524 * 13 11 10 16 16 Cl 1.73609 * 119.84026 * 180.02562 * 15 13 11 17 17 C 1.36474 * 120.31867 * 0.04919 * 15 13 11 18 18 H 0.97004 * 120.00186 * 359.97438 * 1 2 3 19 19 H 1.07998 * 120.15073 * 0.02562 * 10 9 7 20 20 H 0.96697 * 114.00150 * 269.73422 * 12 11 10 21 21 H 0.97000 * 119.99691 * 0.02562 * 14 13 11 22 22 H 0.96996 * 120.00001 * 179.97438 * 14 13 11 23 23 H 1.08007 * 119.98419 * 179.97438 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.3915 2.1038 -1.3953 5 1 1.4937 2.6220 0.7969 6 1 3.5868 1.4136 0.5985 7 6 2.0083 -1.2110 -0.0005 8 1 3.0495 -1.2336 0.2858 9 6 1.3537 -2.4035 -0.3752 10 6 0.2258 -2.3564 -1.2184 11 6 -0.4093 -3.5251 -1.5738 12 8 -1.5012 -3.4871 -2.3832 13 6 0.0736 -4.7538 -1.1055 14 7 -0.5662 -5.9335 -1.4697 15 6 1.1938 -4.7986 -0.2758 16 17 1.7834 -6.3275 0.2977 17 6 1.8284 -3.6464 0.0878 18 1 -0.4850 0.8401 0.0004 19 1 -0.1410 -1.4076 -1.5811 20 1 -2.3403 -3.4114 -1.9085 21 1 -1.3450 -5.9045 -2.0472 22 1 -0.2332 -6.7854 -1.1469 23 1 2.6952 -3.6873 0.7309 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575715457.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:07 Heat of formation + Delta-G solvation = -40.576565 kcal Electronic energy + Delta-G solvation = -11816.646165 eV Core-core repulsion = 9462.064926 eV Total energy + Delta-G solvation = -2354.581239 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.58746 -36.07690 -35.32036 -34.06611 -32.46094 -28.54233 -28.24949 -24.55385 -21.45409 -20.73326 -17.99986 -16.43499 -16.22808 -15.74517 -14.96025 -14.30082 -13.47694 -13.25309 -12.97952 -12.34511 -12.05960 -11.42213 -11.23050 -11.02542 -10.53501 -10.47095 -10.12763 -9.95183 -9.60806 -9.47262 -8.84123 -7.42075 -6.82441 -6.58000 -4.24886 2.57789 2.72195 3.08357 3.11034 3.15266 3.16836 3.94764 4.45817 4.87638 5.27090 5.53677 6.27587 6.66126 6.85876 7.12980 7.15189 7.22013 7.52034 7.77631 7.95318 8.28176 8.38402 8.65259 8.72339 8.82710 8.90134 10.19440 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.039614 B = 0.010204 C = 0.008306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.643096 B = 2743.427764 C = 3370.219021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.080 0.920 9 C 0.092 3.908 10 C -0.138 4.138 11 C 0.051 3.949 12 O -0.502 6.502 13 C 0.089 3.911 14 N -0.886 5.886 15 C -0.056 4.056 16 Cl -0.120 7.120 17 C -0.183 4.183 18 H 0.280 0.720 19 H 0.132 0.868 20 H 0.367 0.633 21 H 0.388 0.612 22 H 0.386 0.614 23 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.225 -4.185 -0.659 4.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.098 0.902 9 C 0.088 3.912 10 C -0.158 4.158 11 C 0.003 3.997 12 O -0.309 6.309 13 C -0.013 4.013 14 N -0.431 5.431 15 C -0.087 4.087 16 Cl -0.092 7.092 17 C -0.203 4.203 18 H 0.091 0.909 19 H 0.150 0.850 20 H 0.219 0.781 21 H 0.215 0.785 22 H 0.214 0.786 23 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.898 -4.115 -1.021 4.334 hybrid contribution -0.201 0.348 0.407 0.572 sum -1.100 -3.767 -0.614 3.972 Atomic orbital electron populations 1.69829 1.07491 1.29145 1.36348 1.25843 0.94741 1.01243 0.92339 0.86282 0.80553 0.80681 0.79103 1.19403 1.20381 1.18596 1.19360 0.98120 0.90847 1.40705 0.90226 1.17212 0.91862 0.91519 0.90587 1.21544 0.99279 0.96375 0.98642 1.17760 0.91948 0.90746 0.99262 1.84805 1.15382 1.96045 1.34639 1.17295 0.95788 0.86822 1.01347 1.41765 1.36056 1.05143 1.60116 1.19650 0.98796 0.84859 1.05368 1.98234 1.88360 1.33857 1.88757 1.20545 1.03427 0.90708 1.05663 0.90939 0.85031 0.78056 0.78463 0.78644 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.24 10.96 55.54 0.61 -19.64 14 2 C 0.07 1.85 5.13 -17.34 -0.09 1.76 14 3 Si 0.91 18.48 29.60 -169.99 -5.03 13.45 14 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 14 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 14 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 14 7 C -0.46 -11.92 9.03 -37.90 -0.34 -12.27 14 8 H 0.08 1.99 7.91 -52.48 -0.41 1.57 14 9 C 0.09 2.39 5.57 -106.81 -0.60 1.80 14 10 C -0.14 -3.51 8.61 -38.78 -0.33 -3.85 14 11 C 0.05 1.17 6.72 -39.10 -0.26 0.90 14 12 O -0.50 -10.05 12.73 -19.67 -0.25 -10.30 14 13 C 0.09 1.95 6.78 -83.43 -0.57 1.38 14 14 N -0.89 -15.84 9.00 32.63 0.29 -15.54 14 15 C -0.06 -1.26 6.29 -39.76 -0.25 -1.51 14 16 Cl -0.12 -2.26 27.54 -51.86 -1.43 -3.69 14 17 C -0.18 -4.40 9.49 -39.22 -0.37 -4.78 14 18 H 0.28 6.45 8.30 -40.82 -0.34 6.11 14 19 H 0.13 3.49 6.17 -52.49 -0.32 3.16 14 20 H 0.37 5.78 9.06 45.56 0.41 6.19 14 21 H 0.39 6.22 8.16 -40.82 -0.33 5.88 14 22 H 0.39 6.35 7.46 -40.82 -0.30 6.04 14 23 H 0.11 2.46 8.06 -52.48 -0.42 2.04 14 LS Contribution 223.88 15.07 3.37 3.37 Total: -1.00 -27.17 223.88 -5.76 -32.94 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -0.52 Total: 15.96 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -2.81 Total: -16.56 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.90 Total: -35.18 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.25 Total: -10.30 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -1.43 Total: -3.69 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -27.17 -5.76 -32.94 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715457.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.639 kcal (2) G-P(sol) polarization free energy of solvation -27.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds