Wall clock time and date at job start Mon Mar 30 2020 02:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86794 * 120.00000 * 2 1 4 4 H 1.48494 * 109.47301 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47311 * 300.00255 * 3 2 1 6 6 H 1.48503 * 109.47004 * 60.00182 * 3 2 1 7 7 C 1.39862 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99744 * 196.17809 * 7 2 1 9 9 C 1.41164 * 120.00282 * 16.45434 * 7 2 1 10 10 C 1.40878 * 120.15881 * 26.00003 * 9 7 2 11 11 C 1.36455 * 120.07095 * 179.97438 * 10 9 7 12 12 C 1.39163 * 120.40467 * 359.97438 * 11 10 9 13 13 O 1.35755 * 119.83808 * 179.97438 * 12 11 10 14 14 C 1.39872 * 120.32591 * 359.97438 * 12 11 10 15 15 N 1.39981 * 120.04213 * 180.02562 * 14 12 11 16 16 C 1.38127 * 119.91645 * 359.78515 * 14 12 11 17 17 Cl 1.73606 * 120.19716 * 180.25570 * 16 14 12 18 18 H 0.96996 * 120.00477 * 359.97438 * 1 2 3 19 19 H 1.08002 * 119.96937 * 359.97438 * 10 9 7 20 20 H 1.08004 * 119.79745 * 180.02562 * 11 10 9 21 21 H 0.96702 * 113.99524 * 90.00920 * 13 12 11 22 22 H 0.97000 * 120.00264 * 359.97438 * 15 14 12 23 23 H 0.97004 * 120.00071 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3464 -0.0006 5 1 1.8842 2.3965 -1.2125 6 1 1.8843 2.3964 1.2125 7 6 2.0083 -1.2112 -0.0005 8 1 3.0562 -1.2298 0.2600 9 6 1.3459 -2.4086 -0.3473 10 6 0.2161 -2.3744 -1.1881 11 6 -0.4226 -3.5330 -1.5226 12 6 0.0352 -4.7547 -1.0384 13 8 -0.6092 -5.9003 -1.3781 14 6 1.1561 -4.8082 -0.2033 15 7 1.6118 -6.0404 0.2800 16 6 1.8157 -3.6441 0.1398 17 17 3.2115 -3.7027 1.1703 18 1 -0.4850 0.8400 0.0004 19 1 -0.1451 -1.4303 -1.5684 20 1 -1.2881 -3.5017 -2.1678 21 1 -0.2730 -6.3166 -2.1835 22 1 1.1500 -6.8578 0.0361 23 1 2.3889 -6.0767 0.8593 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575715467.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:43 Heat of formation + Delta-G solvation = -42.341489 kcal Electronic energy + Delta-G solvation = -11886.510346 eV Core-core repulsion = 9531.852574 eV Total energy + Delta-G solvation = -2354.657771 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.42294 -35.90777 -34.91088 -33.92514 -32.61736 -29.23158 -27.24240 -24.84888 -21.07520 -20.83830 -17.51472 -17.31649 -16.09811 -15.33981 -14.76949 -14.42180 -13.46555 -13.17647 -12.91593 -12.15834 -11.88786 -11.52086 -11.24300 -11.05356 -10.51776 -10.26167 -10.01920 -9.61349 -9.43517 -9.38225 -9.00717 -7.33885 -6.89866 -6.40994 -4.46564 2.57863 2.96807 3.03856 3.09517 3.12560 3.69877 3.86447 4.46347 4.78679 5.37768 5.64883 6.26935 6.74514 6.87695 7.04799 7.08816 7.36870 7.65422 7.88519 7.93824 8.27278 8.41363 8.57740 8.68837 8.73216 8.95866 10.04658 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.036608 B = 0.012075 C = 0.009311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.670194 B = 2318.357984 C = 3006.635097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.439 4.439 8 H 0.089 0.911 9 C 0.147 3.853 10 C -0.183 4.183 11 C -0.079 4.079 12 C -0.108 4.108 13 O -0.493 6.493 14 C 0.234 3.766 15 N -0.884 5.884 16 C -0.203 4.203 17 Cl -0.116 7.116 18 H 0.283 0.717 19 H 0.125 0.875 20 H 0.098 0.902 21 H 0.344 0.656 22 H 0.390 0.610 23 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.446 -3.298 -1.540 4.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.467 4.467 8 H 0.107 0.893 9 C 0.143 3.857 10 C -0.204 4.204 11 C -0.099 4.099 12 C -0.157 4.157 13 O -0.298 6.298 14 C 0.130 3.870 15 N -0.425 5.425 16 C -0.236 4.236 17 Cl -0.089 7.089 18 H 0.094 0.906 19 H 0.143 0.857 20 H 0.116 0.884 21 H 0.194 0.806 22 H 0.217 0.783 23 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.996 -2.942 -0.933 3.676 hybrid contribution 0.762 0.296 -0.155 0.832 sum 2.758 -2.646 -1.089 3.974 Atomic orbital electron populations 1.69877 1.07673 1.29574 1.33297 1.25999 0.94772 1.01643 0.92014 0.86196 0.81133 0.80464 0.78675 1.18124 1.19551 1.19810 1.19702 0.98168 0.90564 1.38288 0.89292 1.17254 0.90469 0.90312 0.87653 1.20759 0.99514 0.96994 1.03100 1.20546 0.98274 0.92191 0.98860 1.17249 1.00486 0.85337 1.12654 1.84927 1.60090 1.38690 1.46091 1.17454 0.91306 0.84769 0.93459 1.42332 1.36089 1.05722 1.58403 1.19983 0.98372 0.93796 1.11413 1.98168 1.43596 1.98419 1.68670 0.90579 0.85706 0.88393 0.80613 0.78298 0.78191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.49 10.96 55.54 0.61 -18.88 14 2 C 0.08 1.83 5.15 -17.34 -0.09 1.74 14 3 Si 0.91 18.17 29.59 -169.99 -5.03 13.14 14 4 H -0.26 -5.13 7.11 56.52 0.40 -4.72 14 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 14 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 14 7 C -0.44 -11.32 8.50 -37.86 -0.32 -11.64 14 8 H 0.09 2.26 7.12 -52.49 -0.37 1.88 14 9 C 0.15 3.86 5.56 -106.79 -0.59 3.26 14 10 C -0.18 -4.65 8.62 -39.23 -0.34 -4.99 14 11 C -0.08 -1.86 9.90 -39.88 -0.39 -2.26 14 12 C -0.11 -2.47 6.74 -38.63 -0.26 -2.73 14 13 O -0.49 -9.76 12.72 -18.97 -0.24 -10.00 14 14 C 0.23 5.33 6.76 -83.57 -0.57 4.77 14 15 N -0.88 -16.41 9.04 32.51 0.29 -16.12 14 16 C -0.20 -4.98 6.39 -38.63 -0.25 -5.23 14 17 Cl -0.12 -2.53 26.23 -51.86 -1.36 -3.89 14 18 H 0.28 6.38 8.30 -40.82 -0.34 6.04 14 19 H 0.13 3.22 6.20 -52.49 -0.33 2.89 14 20 H 0.10 2.09 8.06 -52.48 -0.42 1.66 14 21 H 0.34 5.25 9.06 45.56 0.41 5.66 14 22 H 0.39 6.38 8.19 -40.82 -0.33 6.04 14 23 H 0.39 6.78 7.50 -40.82 -0.31 6.47 14 LS Contribution 221.93 15.07 3.34 3.34 Total: -1.00 -27.72 221.93 -5.68 -33.40 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -0.48 Total: 16.10 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -2.81 Total: -17.08 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.90 Total: -35.00 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.24 Total: -10.00 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Atomic # 17 Polarization: -2.53 SS G_CDS: -1.36 Total: -3.89 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -27.72 -5.68 -33.40 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715467.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.946 kcal (2) G-P(sol) polarization free energy of solvation -27.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds