Wall clock time and date at job start Mon Mar 30 2020 02:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86794 * 120.00000 * 2 1 4 4 H 1.48494 * 109.47301 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47311 * 300.00255 * 3 2 1 6 6 H 1.48503 * 109.47004 * 60.00182 * 3 2 1 7 7 C 1.39862 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99744 * 196.17809 * 7 2 1 9 9 C 1.41164 * 120.00282 * 16.45434 * 7 2 1 10 10 C 1.40878 * 120.15881 * 26.00003 * 9 7 2 11 11 C 1.36455 * 120.07095 * 179.97438 * 10 9 7 12 12 C 1.39163 * 120.40467 * 359.97438 * 11 10 9 13 13 O 1.35755 * 119.83808 * 179.97438 * 12 11 10 14 14 C 1.39872 * 120.32591 * 359.97438 * 12 11 10 15 15 N 1.39981 * 120.04213 * 180.02562 * 14 12 11 16 16 C 1.38127 * 119.91645 * 359.78515 * 14 12 11 17 17 Cl 1.73606 * 120.19716 * 180.25570 * 16 14 12 18 18 H 0.96996 * 120.00477 * 359.97438 * 1 2 3 19 19 H 1.08002 * 119.96937 * 359.97438 * 10 9 7 20 20 H 1.08004 * 119.79745 * 180.02562 * 11 10 9 21 21 H 0.96702 * 113.99524 * 90.00920 * 13 12 11 22 22 H 0.97000 * 120.00264 * 359.97438 * 15 14 12 23 23 H 0.97004 * 120.00071 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3464 -0.0006 5 1 1.8842 2.3965 -1.2125 6 1 1.8843 2.3964 1.2125 7 6 2.0083 -1.2112 -0.0005 8 1 3.0562 -1.2298 0.2600 9 6 1.3459 -2.4086 -0.3473 10 6 0.2161 -2.3744 -1.1881 11 6 -0.4226 -3.5330 -1.5226 12 6 0.0352 -4.7547 -1.0384 13 8 -0.6092 -5.9003 -1.3781 14 6 1.1561 -4.8082 -0.2033 15 7 1.6118 -6.0404 0.2800 16 6 1.8157 -3.6441 0.1398 17 17 3.2115 -3.7027 1.1703 18 1 -0.4850 0.8400 0.0004 19 1 -0.1451 -1.4303 -1.5684 20 1 -1.2881 -3.5017 -2.1678 21 1 -0.2730 -6.3166 -2.1835 22 1 1.1500 -6.8578 0.0361 23 1 2.3889 -6.0767 0.8593 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715467.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:43 Heat of formation + Delta-G solvation = -61.963131 kcal Electronic energy + Delta-G solvation = -11887.361204 eV Core-core repulsion = 9531.852574 eV Total energy + Delta-G solvation = -2355.508630 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.17632 -37.62575 -36.69384 -35.62261 -34.37419 -31.06870 -28.99972 -26.68093 -22.88214 -22.64236 -19.32872 -18.98929 -17.77378 -17.11621 -16.45552 -16.11489 -15.18634 -14.86460 -14.67640 -13.93344 -13.63734 -13.31200 -12.86854 -12.75634 -12.19223 -11.96882 -11.77395 -11.35982 -11.21306 -11.10847 -10.79137 -9.18533 -8.69052 -8.12909 -6.35963 0.79501 1.14526 1.41416 1.50814 1.56514 1.89019 2.21667 2.66318 3.20420 3.58624 3.93160 4.49678 4.93795 5.04946 5.24263 5.34418 5.57306 5.86981 6.02281 6.10191 6.51793 6.65671 6.82257 6.87076 7.17668 7.32389 8.28270 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.036608 B = 0.012075 C = 0.009311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.670194 B = 2318.357984 C = 3006.635097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.038 3.962 3 Si 0.981 3.019 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.266 1.266 7 C -0.470 4.470 8 H 0.084 0.916 9 C 0.120 3.880 10 C -0.207 4.207 11 C -0.083 4.083 12 C -0.105 4.105 13 O -0.493 6.493 14 C 0.230 3.770 15 N -0.867 5.867 16 C -0.224 4.224 17 Cl -0.100 7.100 18 H 0.292 0.708 19 H 0.112 0.888 20 H 0.116 0.884 21 H 0.372 0.628 22 H 0.403 0.597 23 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.713 -3.798 -1.618 4.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.191 1.191 7 C -0.498 4.498 8 H 0.102 0.898 9 C 0.116 3.884 10 C -0.227 4.227 11 C -0.102 4.102 12 C -0.154 4.154 13 O -0.301 6.301 14 C 0.124 3.876 15 N -0.410 5.410 16 C -0.257 4.257 17 Cl -0.072 7.072 18 H 0.103 0.897 19 H 0.130 0.870 20 H 0.134 0.866 21 H 0.225 0.775 22 H 0.233 0.767 23 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.266 -3.498 -1.015 4.289 hybrid contribution 0.642 0.261 -0.143 0.707 sum 2.908 -3.237 -1.159 4.503 Atomic orbital electron populations 1.69912 1.08978 1.30917 1.33808 1.26783 0.95467 1.04538 0.91064 0.85165 0.79494 0.76115 0.79068 1.18182 1.18541 1.19109 1.19854 0.98149 0.91654 1.40121 0.89807 1.17586 0.91195 0.91333 0.88298 1.20707 1.00472 0.97217 1.04352 1.20772 0.98571 0.92065 0.98814 1.17306 1.00044 0.86003 1.12093 1.84829 1.59998 1.37500 1.47724 1.17547 0.91171 0.85679 0.93193 1.42224 1.36091 1.04910 1.57728 1.20182 0.99387 0.94044 1.12071 1.98155 1.42576 1.98394 1.68064 0.89750 0.87033 0.86593 0.77523 0.76721 0.77359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.06 10.96 21.82 0.24 -40.83 14 2 C 0.04 1.87 5.15 85.22 0.44 2.31 14 3 Si 0.98 37.15 29.59 68.60 2.03 39.18 14 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 14 5 H -0.26 -9.40 7.11 99.48 0.71 -8.69 14 6 H -0.27 -9.72 7.11 99.48 0.71 -9.02 14 7 C -0.47 -24.59 8.50 23.38 0.20 -24.39 14 8 H 0.08 4.32 7.12 -2.91 -0.02 4.30 14 9 C 0.12 6.36 5.56 -21.27 -0.12 6.24 14 10 C -0.21 -10.64 8.62 22.50 0.19 -10.45 14 11 C -0.08 -3.84 9.90 22.08 0.22 -3.62 14 12 C -0.11 -4.61 6.74 22.89 0.15 -4.45 14 13 O -0.49 -18.02 12.72 -90.81 -1.16 -19.18 14 14 C 0.23 10.13 6.76 38.21 0.26 10.39 14 15 N -0.87 -30.12 9.04 -51.06 -0.46 -30.58 14 16 C -0.22 -10.90 6.39 22.89 0.15 -10.76 14 17 Cl -0.10 -4.27 26.23 -2.72 -0.07 -4.34 14 18 H 0.29 13.22 8.30 -92.71 -0.77 12.45 14 19 H 0.11 5.93 6.20 -2.91 -0.02 5.91 14 20 H 0.12 4.81 8.06 -2.91 -0.02 4.78 14 21 H 0.37 9.98 9.06 -74.06 -0.67 9.31 14 22 H 0.40 11.95 8.19 -92.71 -0.76 11.19 14 23 H 0.40 12.89 7.50 -92.71 -0.70 12.19 14 Total: -1.00 -58.26 221.93 1.24 -57.03 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: -0.84 Total: 33.44 kcal Atomic # 6 Polarization: -36.22 SS G_CDS: 1.49 Total: -34.73 kcal Atomic # 7 Polarization: -71.19 SS G_CDS: -0.22 Total: -71.41 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -1.16 Total: -19.18 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Atomic # 17 Polarization: -4.27 SS G_CDS: -0.07 Total: -4.34 kcal Total: -58.26 1.24 -57.03 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715467.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.936 kcal (2) G-P(sol) polarization free energy of solvation -58.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds