Wall clock time and date at job start Mon Mar 30 2020 02:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30939 * 1 3 3 Si 1.86801 * 120.00041 * 2 1 4 4 H 1.48498 * 109.47461 * 275.29750 * 3 2 1 5 5 H 1.48503 * 109.46938 * 35.30152 * 3 2 1 6 6 H 1.48499 * 109.47100 * 155.29430 * 3 2 1 7 7 C 1.39894 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00222 * 342.33213 * 7 2 1 9 9 C 1.40884 * 119.99887 * 162.33932 * 7 2 1 10 10 C 1.41534 * 120.32386 * 313.93213 * 9 7 2 11 11 N 1.38891 * 120.19148 * 359.75430 * 10 9 7 12 12 C 1.38446 * 119.61948 * 180.02562 * 10 9 7 13 13 C 1.38527 * 120.28694 * 359.97438 * 12 10 9 14 14 Cl 1.73602 * 119.66448 * 180.02562 * 13 12 10 15 15 C 1.38719 * 120.67300 * 0.03926 * 13 12 10 16 16 C 1.38128 * 120.37209 * 359.96393 * 15 13 12 17 17 O 1.35703 * 120.15454 * 179.97438 * 16 15 13 18 18 H 0.96997 * 120.00497 * 359.97438 * 1 2 3 19 19 H 0.97003 * 120.00025 * 359.97438 * 11 10 9 20 20 H 0.97002 * 120.00257 * 179.97438 * 11 10 9 21 21 H 1.08004 * 119.85143 * 179.97438 * 12 10 9 22 22 H 1.07995 * 119.81164 * 179.97438 * 15 13 12 23 23 H 0.96703 * 114.00070 * 271.10380 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 2.3790 2.1111 -1.3940 5 1 1.5013 2.6177 0.8091 6 1 3.5924 1.4104 0.5852 7 6 2.0089 -1.2115 -0.0005 8 1 1.5071 -2.1249 0.2829 9 6 3.3679 -1.2401 -0.3707 10 6 3.8088 -0.5500 -1.5251 11 7 2.9026 0.1570 -2.3049 12 6 5.1475 -0.5883 -1.8756 13 6 6.0523 -1.2970 -1.1022 14 17 7.7274 -1.3336 -1.5563 15 6 5.6333 -1.9779 0.0314 16 6 4.3041 -1.9582 0.4066 17 8 3.8989 -2.6263 1.5161 18 1 -0.4851 0.8400 0.0004 19 1 1.9644 0.1784 -2.0591 20 1 3.2078 0.6293 -3.0953 21 1 5.4880 -0.0634 -2.7560 22 1 6.3504 -2.5263 0.6241 23 1 3.6490 -3.5460 1.3521 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575715530.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:33 Heat of formation + Delta-G solvation = -27.643536 kcal Electronic energy + Delta-G solvation = -12086.209138 eV Core-core repulsion = 9732.188718 eV Total energy + Delta-G solvation = -2354.020420 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.76282 -36.15148 -35.77676 -33.64282 -32.51670 -29.87029 -27.70348 -24.96353 -21.21284 -20.81125 -17.94230 -17.44202 -16.04887 -15.25657 -15.17444 -14.13834 -13.90990 -13.49375 -12.91901 -12.72981 -12.31265 -11.68292 -11.51317 -11.25847 -10.73012 -10.26477 -10.20290 -10.07043 -9.56835 -9.18381 -8.94518 -7.50803 -6.91006 -6.64565 -4.39909 2.21144 2.49589 3.03706 3.12051 3.18893 3.31837 3.97457 4.36227 4.79948 5.08111 5.44186 5.97337 6.15783 6.48906 6.65661 6.82036 7.16318 7.26331 7.42960 7.56416 8.18245 8.33166 8.50130 8.65837 8.78358 8.88740 10.14791 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.039047 B = 0.012548 C = 0.010617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.906540 B = 2230.951007 C = 2636.755226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.259 1.259 5 H -0.295 1.295 6 H -0.255 1.255 7 C -0.451 4.451 8 H 0.091 0.909 9 C 0.020 3.980 10 C 0.158 3.842 11 N -0.874 5.874 12 C -0.179 4.179 13 C -0.067 4.067 14 Cl -0.115 7.115 15 C -0.152 4.152 16 C 0.051 3.949 17 O -0.484 6.484 18 H 0.282 0.718 19 H 0.404 0.596 20 H 0.385 0.615 21 H 0.109 0.891 22 H 0.111 0.889 23 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.079 -0.061 -3.331 6.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.223 1.223 6 H -0.178 1.178 7 C -0.482 4.482 8 H 0.109 0.891 9 C 0.014 3.986 10 C 0.054 3.946 11 N -0.419 5.419 12 C -0.204 4.204 13 C -0.095 4.095 14 Cl -0.087 7.087 15 C -0.173 4.173 16 C 0.004 3.996 17 O -0.291 6.291 18 H 0.092 0.908 19 H 0.238 0.762 20 H 0.212 0.788 21 H 0.127 0.873 22 H 0.129 0.871 23 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 6.071 0.547 -3.029 6.806 hybrid contribution 0.093 0.440 -0.434 0.625 sum 6.164 0.987 -3.464 7.139 Atomic orbital electron populations 1.69751 1.07679 1.29748 1.37830 1.26018 0.94768 1.01156 0.92359 0.86541 0.81111 0.80167 0.78917 1.18361 1.22321 1.17807 1.18837 0.92216 0.96152 1.40974 0.89082 1.17769 0.94297 0.95893 0.90633 1.17584 0.88492 0.97098 0.91439 1.42671 1.10327 1.58322 1.30589 1.19886 0.91311 1.06777 1.02415 1.19710 0.82602 1.07732 0.99480 1.98253 1.19561 1.98137 1.92775 1.20644 0.95935 1.03851 0.96910 1.18250 0.89517 1.03296 0.88553 1.84776 1.87210 1.27068 1.30011 0.90788 0.76198 0.78841 0.87284 0.87093 0.78230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.39 13.93 55.55 0.77 -20.62 14 2 C 0.07 1.83 4.08 -17.31 -0.07 1.76 14 3 Si 0.91 20.66 24.23 -169.99 -4.12 16.54 14 4 H -0.26 -5.34 6.15 56.52 0.35 -4.99 14 5 H -0.30 -6.70 7.11 56.52 0.40 -6.30 14 6 H -0.25 -6.29 7.11 56.52 0.40 -5.88 14 7 C -0.45 -11.83 8.72 -37.96 -0.33 -12.16 14 8 H 0.09 2.54 8.06 -52.49 -0.42 2.11 14 9 C 0.02 0.49 4.63 -106.48 -0.49 0.00 14 10 C 0.16 3.52 5.27 -83.33 -0.44 3.08 14 11 N -0.87 -17.57 6.27 32.69 0.21 -17.37 14 12 C -0.18 -3.70 9.63 -39.40 -0.38 -4.08 14 13 C -0.07 -1.38 6.33 -39.30 -0.25 -1.63 14 14 Cl -0.12 -2.03 28.93 -51.86 -1.50 -3.53 14 15 C -0.15 -3.22 9.73 -39.44 -0.38 -3.60 14 16 C 0.05 1.18 6.73 -38.46 -0.26 0.92 14 17 O -0.48 -10.44 12.95 -18.81 -0.24 -10.68 14 18 H 0.28 6.71 8.30 -40.82 -0.34 6.37 14 19 H 0.40 8.63 5.14 -40.82 -0.21 8.42 14 20 H 0.38 6.43 8.83 -40.82 -0.36 6.07 14 21 H 0.11 2.00 8.06 -52.48 -0.42 1.58 14 22 H 0.11 2.13 8.06 -52.49 -0.42 1.71 14 23 H 0.36 6.10 9.06 45.56 0.41 6.51 14 LS Contribution 217.33 15.07 3.28 3.28 Total: -1.00 -27.69 217.33 -4.83 -32.52 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -0.61 Total: 15.58 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -2.60 Total: -15.72 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.98 Total: -37.99 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -0.24 Total: -10.68 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.12 Total: 16.54 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -1.50 Total: -3.53 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -27.69 -4.83 -32.52 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715530.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.876 kcal (2) G-P(sol) polarization free energy of solvation -27.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds