Wall clock time and date at job start Mon Mar 30 2020 02:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30957 * 1 3 3 Si 1.86799 * 120.00054 * 2 1 4 4 H 1.48500 * 109.47246 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47118 * 119.99922 * 3 2 1 6 6 H 1.48500 * 109.46953 * 239.99840 * 3 2 1 7 7 C 1.39847 * 119.99595 * 180.27305 * 2 1 3 8 8 H 1.08009 * 119.99997 * 196.01238 * 7 2 1 9 9 C 1.40918 * 120.00346 * 16.01527 * 7 2 1 10 10 C 1.41655 * 120.24891 * 46.33858 * 9 7 2 11 11 N 1.38834 * 120.24641 * 359.95596 * 10 9 7 12 12 C 1.38380 * 119.50343 * 179.97438 * 10 9 7 13 13 C 1.38906 * 120.01030 * 359.97438 * 12 10 9 14 14 O 1.35699 * 119.74432 * 180.02562 * 13 12 10 15 15 C 1.39421 * 120.50467 * 0.02562 * 13 12 10 16 16 C 1.36458 * 120.50394 * 359.68831 * 15 13 12 17 17 Cl 1.73604 * 120.01657 * 180.27873 * 16 15 13 18 18 H 0.97003 * 120.00366 * 354.22463 * 1 2 3 19 19 H 0.97001 * 119.99918 * 359.97438 * 11 10 9 20 20 H 0.96998 * 120.00431 * 180.02562 * 11 10 9 21 21 H 1.08005 * 119.99242 * 179.97438 * 12 10 9 22 22 H 0.96694 * 114.00445 * 90.00513 * 14 13 12 23 23 H 1.08005 * 119.75331 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2436 1.6177 0.0000 4 1 1.2786 2.7465 -0.0006 5 1 3.0973 1.6964 1.2125 6 1 3.0973 1.6963 -1.2125 7 6 2.0087 -1.2111 -0.0058 8 1 3.0574 -1.2306 0.2522 9 6 1.3451 -2.4062 -0.3482 10 6 0.5032 -2.4541 -1.4863 11 7 0.3249 -1.3237 -2.2724 12 6 -0.1405 -3.6359 -1.8086 13 6 0.0415 -4.7639 -1.0188 14 8 -0.5919 -5.9202 -1.3401 15 6 0.8701 -4.7173 0.1015 16 6 1.5196 -3.5645 0.4352 17 17 2.5540 -3.5225 1.8288 18 1 -0.4851 0.8358 0.0845 19 1 0.7774 -0.4970 -2.0427 20 1 -0.2527 -1.3603 -3.0507 21 1 -0.7846 -3.6811 -2.6744 22 1 -0.0870 -6.4938 -1.9325 23 1 1.0027 -5.6015 0.7073 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715558.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:30 Heat of formation + Delta-G solvation = -52.763207 kcal Electronic energy + Delta-G solvation = -12006.501910 eV Core-core repulsion = 9651.392219 eV Total energy + Delta-G solvation = -2355.109691 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.21315 -38.00962 -36.95141 -35.04247 -34.08465 -30.97675 -29.46695 -26.46897 -22.85974 -22.59414 -19.31140 -19.03331 -17.70238 -16.83663 -16.53605 -15.88492 -15.28452 -15.02926 -14.67672 -14.00370 -13.79450 -13.19101 -12.83504 -12.69056 -12.38513 -12.17704 -11.75238 -11.41824 -11.17854 -10.92989 -10.63403 -9.05047 -8.51606 -8.01745 -6.19080 0.74170 1.06429 1.43614 1.46329 1.52058 1.80115 2.27657 2.72846 3.42326 3.52735 3.91233 4.48018 4.68657 5.02369 5.25461 5.32689 5.48047 5.79652 5.90942 6.03996 6.43376 6.70343 6.99929 7.11402 7.24445 7.51124 8.48956 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.032505 B = 0.013611 C = 0.010100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.196669 B = 2056.739801 C = 2771.706900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.039 3.961 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.494 4.494 8 H 0.072 0.928 9 C 0.033 3.967 10 C 0.200 3.800 11 N -0.846 5.846 12 C -0.229 4.229 13 C 0.063 3.937 14 O -0.505 6.505 15 C -0.181 4.181 16 C -0.082 4.082 17 Cl -0.099 7.099 18 H 0.283 0.717 19 H 0.396 0.604 20 H 0.389 0.611 21 H 0.122 0.878 22 H 0.393 0.607 23 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.645 -1.950 -3.801 4.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.173 4.173 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.526 4.526 8 H 0.090 0.910 9 C 0.028 3.972 10 C 0.092 3.908 11 N -0.385 5.385 12 C -0.254 4.254 13 C 0.017 3.983 14 O -0.315 6.315 15 C -0.202 4.202 16 C -0.111 4.111 17 Cl -0.070 7.070 18 H 0.093 0.907 19 H 0.228 0.772 20 H 0.217 0.783 21 H 0.140 0.860 22 H 0.249 0.751 23 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.106 -1.572 -3.368 3.877 hybrid contribution 0.604 0.765 -0.069 0.977 sum 1.710 -0.806 -3.437 3.922 Atomic orbital electron populations 1.69924 1.08071 1.30144 1.38150 1.26311 0.95258 1.02880 0.92836 0.85543 0.78940 0.77176 0.79885 1.19744 1.19695 1.18102 1.19087 0.97421 0.91190 1.44928 0.90958 1.17300 0.95571 0.92938 0.91422 1.17822 0.95634 0.87198 0.90167 1.42085 1.54647 1.11490 1.30323 1.20580 1.07491 0.93180 1.04114 1.17629 0.98283 0.86378 0.96009 1.84703 1.46320 1.30273 1.70233 1.20403 1.01623 0.97472 1.00748 1.20399 1.02164 0.96885 0.91677 1.98204 1.67361 1.98852 1.42605 0.90662 0.77192 0.78295 0.85979 0.75064 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.53 11.38 21.82 0.25 -41.28 14 2 C 0.04 1.86 3.49 85.21 0.30 2.15 14 3 Si 0.96 37.08 29.59 68.60 2.03 39.11 14 4 H -0.27 -10.08 7.11 99.48 0.71 -9.38 14 5 H -0.27 -10.70 7.11 99.48 0.71 -9.99 14 6 H -0.26 -9.47 7.11 99.48 0.71 -8.76 14 7 C -0.49 -25.26 7.76 23.32 0.18 -25.08 14 8 H 0.07 3.73 7.75 -2.91 -0.02 3.70 14 9 C 0.03 1.70 5.26 -21.13 -0.11 1.59 14 10 C 0.20 9.40 6.25 38.91 0.24 9.64 14 11 N -0.85 -35.35 8.04 -50.48 -0.41 -35.75 14 12 C -0.23 -9.89 9.81 22.46 0.22 -9.67 14 13 C 0.06 2.66 6.71 22.72 0.15 2.81 14 14 O -0.50 -17.97 13.48 -90.19 -1.22 -19.18 14 15 C -0.18 -8.07 9.67 22.14 0.21 -7.85 14 16 C -0.08 -3.99 6.33 22.51 0.14 -3.85 14 17 Cl -0.10 -4.37 27.94 -2.72 -0.08 -4.44 14 18 H 0.28 13.09 8.31 -92.71 -0.77 12.32 14 19 H 0.40 17.17 5.62 -92.71 -0.52 16.65 14 20 H 0.39 13.58 8.83 -92.71 -0.82 12.76 14 21 H 0.12 4.66 8.06 -2.91 -0.02 4.63 14 22 H 0.39 9.57 9.06 -74.06 -0.67 8.90 14 23 H 0.12 4.80 8.06 -2.91 -0.02 4.77 14 Total: -1.00 -57.37 222.72 1.19 -56.18 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: -0.73 Total: 35.62 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 1.34 Total: -30.25 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -0.16 Total: -77.03 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -1.22 Total: -19.18 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Atomic # 17 Polarization: -4.37 SS G_CDS: -0.08 Total: -4.44 kcal Total: -57.37 1.19 -56.18 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715558.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.414 kcal (2) G-P(sol) polarization free energy of solvation -57.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds