Wall clock time and date at job start Mon Mar 30 2020 02:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86805 * 119.99944 * 2 1 4 4 H 1.48500 * 109.47190 * 240.00481 * 3 2 1 5 5 H 1.48502 * 109.47120 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47095 * 120.00440 * 3 2 1 7 7 C 1.39913 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00304 * 200.53167 * 7 2 1 9 9 C 1.41150 * 119.99672 * 20.80733 * 7 2 1 10 10 C 1.41133 * 120.26168 * 38.36043 * 9 7 2 11 11 O 1.35772 * 120.22567 * 359.97438 * 10 9 7 12 12 C 1.38940 * 119.55368 * 179.72104 * 10 9 7 13 13 N 1.40075 * 119.95670 * 180.29447 * 12 10 9 14 14 C 1.38876 * 120.08576 * 0.53063 * 12 10 9 15 15 C 1.38716 * 120.53751 * 359.76303 * 14 12 10 16 16 C 1.37627 * 120.44579 * 359.95644 * 15 14 12 17 17 Cl 1.73601 * 120.05076 * 179.97438 * 16 15 14 18 18 H 0.97000 * 119.99748 * 3.38214 * 1 2 3 19 19 H 0.96701 * 114.00277 * 89.99581 * 11 10 9 20 20 H 0.97008 * 120.00109 * 180.23856 * 13 12 10 21 21 H 0.97004 * 120.00164 * 0.23393 * 13 12 10 22 22 H 1.08004 * 119.73041 * 179.74430 * 14 12 10 23 23 H 1.07997 * 119.78057 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0966 1.6965 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0967 1.6964 1.2124 7 6 2.0085 -1.2117 -0.0005 8 1 3.0370 -1.2415 0.3275 9 6 1.3718 -2.3940 -0.4353 10 6 0.4829 -2.3614 -1.5311 11 8 0.2336 -1.1921 -2.1744 12 6 -0.1313 -3.5351 -1.9503 13 7 -1.0103 -3.5136 -3.0407 14 6 0.1212 -4.7285 -1.2866 15 6 0.9895 -4.7636 -0.2053 16 6 1.6143 -3.6153 0.2249 17 17 2.6984 -3.6708 1.5796 18 1 -0.4850 0.8386 -0.0496 19 1 0.8338 -1.0127 -2.9110 20 1 -1.4422 -4.3320 -3.3318 21 1 -1.1872 -2.6803 -3.5048 22 1 -0.3626 -5.6367 -1.6148 23 1 1.1767 -5.6984 0.3021 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715617.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:41 Heat of formation + Delta-G solvation = -53.617964 kcal Electronic energy + Delta-G solvation = -12114.756592 eV Core-core repulsion = 9759.609836 eV Total energy + Delta-G solvation = -2355.146756 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.08179 -37.18935 -36.46708 -35.58726 -34.17462 -31.13197 -28.51985 -26.94551 -22.99158 -22.19956 -19.36941 -18.59311 -17.51958 -17.01546 -16.42377 -16.07226 -15.24017 -14.87538 -14.44356 -13.74901 -13.29851 -13.08816 -12.83712 -12.62439 -12.47859 -12.26266 -11.99264 -11.18755 -10.97294 -10.70739 -10.44199 -9.08915 -8.53689 -7.95103 -6.26535 0.96231 1.06471 1.43812 1.52405 1.54992 1.99775 2.30508 2.83213 3.34148 3.55152 4.06517 4.50566 4.82003 5.12188 5.30399 5.43627 5.65987 5.79311 5.95317 6.12733 6.48290 6.79836 6.86852 7.02330 7.30272 7.60084 8.49203 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.026207 B = 0.016369 C = 0.010590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.152281 B = 1710.189159 C = 2643.365114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.062 3.938 3 Si 0.964 3.036 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.495 4.495 8 H 0.072 0.928 9 C 0.107 3.893 10 C -0.049 4.049 11 O -0.468 6.468 12 C 0.205 3.795 13 N -0.869 5.869 14 C -0.283 4.283 15 C -0.056 4.056 16 C -0.177 4.177 17 Cl -0.112 7.112 18 H 0.282 0.718 19 H 0.350 0.650 20 H 0.401 0.599 21 H 0.398 0.602 22 H 0.132 0.868 23 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.184 -2.930 -4.459 5.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.158 4.158 3 Si 0.786 3.214 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.523 4.523 8 H 0.090 0.910 9 C 0.102 3.898 10 C -0.100 4.100 11 O -0.272 6.272 12 C 0.101 3.899 13 N -0.411 5.411 14 C -0.306 4.306 15 C -0.075 4.075 16 C -0.206 4.206 17 Cl -0.084 7.084 18 H 0.092 0.908 19 H 0.201 0.799 20 H 0.230 0.770 21 H 0.226 0.774 22 H 0.150 0.850 23 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.386 -2.749 -3.815 4.718 hybrid contribution 0.555 0.716 -0.339 0.967 sum 0.169 -2.033 -4.154 4.628 Atomic orbital electron populations 1.69827 1.08892 1.30209 1.32040 1.26300 0.94904 1.03027 0.91540 0.85549 0.78942 0.77232 0.79670 1.18373 1.19909 1.19447 1.19327 0.99158 0.92700 1.41141 0.90988 1.17804 0.89924 0.91888 0.90141 1.17865 1.08926 0.84442 0.98738 1.84987 1.56494 1.37864 1.47879 1.18104 0.90553 0.92904 0.88371 1.42175 1.51122 1.13231 1.34565 1.20034 1.10599 0.96442 1.03520 1.20544 0.95119 0.95960 0.95915 1.20865 1.06746 0.96469 0.96505 1.98179 1.65040 1.98728 1.46459 0.90767 0.79895 0.76975 0.77394 0.85038 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -42.01 11.24 21.82 0.25 -41.76 14 2 C 0.06 3.13 4.38 85.24 0.37 3.50 14 3 Si 0.96 39.24 29.61 68.60 2.03 41.27 14 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 14 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 14 6 H -0.27 -10.93 7.11 99.48 0.71 -10.22 14 7 C -0.49 -26.51 8.11 23.39 0.19 -26.32 14 8 H 0.07 3.87 7.57 -2.91 -0.02 3.84 14 9 C 0.11 5.62 5.37 -21.19 -0.11 5.51 14 10 C -0.05 -2.39 6.21 23.15 0.14 -2.24 14 11 O -0.47 -21.68 9.60 -90.99 -0.87 -22.55 14 12 C 0.21 8.70 6.76 38.14 0.26 8.96 14 13 N -0.87 -28.35 9.09 -51.12 -0.46 -28.82 14 14 C -0.28 -11.38 9.88 22.54 0.22 -11.16 14 15 C -0.06 -2.39 9.79 22.24 0.22 -2.18 14 16 C -0.18 -8.65 6.37 22.79 0.15 -8.50 14 17 Cl -0.11 -5.03 27.82 -2.72 -0.08 -5.10 14 18 H 0.28 13.99 8.30 -92.71 -0.77 13.22 14 19 H 0.35 13.68 9.06 -74.06 -0.67 13.01 14 20 H 0.40 10.44 8.84 -92.70 -0.82 9.62 14 21 H 0.40 12.38 8.18 -92.71 -0.76 11.62 14 22 H 0.13 4.36 8.06 -2.91 -0.02 4.34 14 23 H 0.13 4.63 8.06 -2.91 -0.02 4.60 14 Total: -1.00 -60.18 223.65 1.33 -58.85 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -0.97 Total: 30.54 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 1.44 Total: -32.44 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -0.22 Total: -70.58 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.87 Total: -22.55 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Atomic # 17 Polarization: -5.03 SS G_CDS: -0.08 Total: -5.10 kcal Total: -60.18 1.33 -58.85 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715617.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.233 kcal (2) G-P(sol) polarization free energy of solvation -60.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds