Wall clock time and date at job start Mon Mar 30 2020 02:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48503 * 109.46874 * 269.99070 * 3 2 1 5 5 H 1.48494 * 109.47149 * 29.99571 * 3 2 1 6 6 H 1.48500 * 109.47116 * 149.99724 * 3 2 1 7 7 C 1.39904 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00209 * 200.81946 * 7 2 1 9 9 C 1.41123 * 119.99682 * 21.10013 * 7 2 1 10 10 C 1.41374 * 120.25851 * 38.34686 * 9 7 2 11 11 O 1.35723 * 120.12833 * 359.97438 * 10 9 7 12 12 C 1.38313 * 119.74237 * 179.97438 * 10 9 7 13 13 C 1.38327 * 120.27586 * 0.02562 * 12 10 9 14 14 C 1.39350 * 120.52886 * 359.94985 * 13 12 10 15 15 N 1.39960 * 119.86955 * 180.02562 * 14 13 12 16 16 C 1.38237 * 120.25372 * 359.76577 * 14 13 12 17 17 Cl 1.73602 * 120.14411 * 180.25483 * 16 14 13 18 18 H 0.96999 * 119.99838 * 0.02562 * 1 2 3 19 19 H 0.96696 * 113.99915 * 90.89158 * 11 10 9 20 20 H 1.08004 * 119.86491 * 179.97438 * 12 10 9 21 21 H 1.08000 * 119.73241 * 179.97438 * 13 12 10 22 22 H 0.96998 * 119.99953 * 0.02562 * 15 14 13 23 23 H 0.96997 * 119.99977 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4905 2.0463 -1.4001 5 1 1.4402 2.6527 0.6999 6 1 3.5404 1.4403 0.7001 7 6 2.0084 -1.2116 0.0005 8 1 3.0356 -1.2420 0.3330 9 6 1.3738 -2.3929 -0.4389 10 6 0.4880 -2.3584 -1.5402 11 8 0.2429 -1.1873 -2.1809 12 6 -0.1278 -3.5227 -1.9623 13 6 0.1194 -4.7179 -1.3112 14 6 0.9907 -4.7651 -0.2248 15 7 1.2312 -5.9820 0.4234 16 6 1.6226 -3.6157 0.2117 17 17 2.7127 -3.6790 1.5613 18 1 -0.4850 0.8400 -0.0004 19 1 0.8380 -1.0127 -2.9227 20 1 -0.8052 -3.4985 -2.8032 21 1 -0.3666 -5.6217 -1.6479 22 1 0.7920 -6.7904 0.1160 23 1 1.8371 -6.0170 1.1801 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575715684.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:34 Heat of formation + Delta-G solvation = -33.155751 kcal Electronic energy + Delta-G solvation = -12073.170754 eV Core-core repulsion = 9718.911306 eV Total energy + Delta-G solvation = -2354.259448 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.19597 -35.86271 -34.78587 -33.50368 -32.25012 -29.71947 -26.64414 -24.99427 -21.09175 -20.68944 -17.52438 -16.64868 -16.14206 -15.34070 -14.76437 -14.00671 -13.49895 -12.97706 -12.70062 -12.28481 -11.66352 -11.43647 -11.07114 -10.90127 -10.63848 -10.32746 -10.28728 -9.45659 -9.22080 -8.99326 -8.63928 -7.32824 -6.69229 -6.28047 -4.33986 2.72550 2.88925 3.14680 3.18435 3.22390 3.74339 4.03118 4.65747 4.78575 5.39233 5.92227 6.24108 6.45581 6.85591 7.03916 7.23695 7.48449 7.50768 7.73993 7.93976 8.37626 8.46278 8.59604 8.72923 8.89239 9.37611 10.30499 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.034772 B = 0.014000 C = 0.010497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.048615 B = 1999.508308 C = 2666.872248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.093 3.907 3 Si 0.901 3.099 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.462 4.462 8 H 0.084 0.916 9 C 0.139 3.861 10 C 0.006 3.994 11 O -0.467 6.467 12 C -0.083 4.083 13 C -0.291 4.291 14 C 0.239 3.761 15 N -0.890 5.890 16 C -0.190 4.190 17 Cl -0.116 7.116 18 H 0.280 0.720 19 H 0.343 0.657 20 H 0.098 0.902 21 H 0.098 0.902 22 H 0.386 0.614 23 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.075 -3.784 -1.321 4.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.130 4.130 3 Si 0.726 3.274 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.490 4.490 8 H 0.102 0.898 9 C 0.134 3.866 10 C -0.040 4.040 11 O -0.271 6.271 12 C -0.103 4.103 13 C -0.315 4.315 14 C 0.136 3.864 15 N -0.432 5.432 16 C -0.223 4.223 17 Cl -0.088 7.088 18 H 0.091 0.909 19 H 0.194 0.806 20 H 0.116 0.884 21 H 0.116 0.884 22 H 0.213 0.787 23 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.463 -3.510 -0.782 3.882 hybrid contribution 0.768 0.384 -0.061 0.861 sum 2.231 -3.126 -0.843 3.932 Atomic orbital electron populations 1.69768 1.07702 1.29324 1.29924 1.25698 0.94389 1.00522 0.92422 0.86440 0.80599 0.81224 0.79180 1.19349 1.20553 1.18840 1.19302 0.99587 0.91304 1.38790 0.89788 1.17438 0.88845 0.90780 0.89507 1.18127 1.05029 0.84386 0.96499 1.85011 1.57088 1.37960 1.47042 1.20715 0.98704 0.92108 0.98770 1.19535 1.10909 0.97396 1.03611 1.17230 0.93220 0.84493 0.91474 1.42473 1.54868 1.07389 1.38421 1.20097 1.09051 0.94906 0.98206 1.98172 1.64817 1.98391 1.47378 0.90906 0.80644 0.88381 0.88412 0.78748 0.78160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.87 11.27 55.55 0.63 -19.25 14 2 C 0.09 2.36 4.37 -17.33 -0.08 2.28 14 3 Si 0.90 19.00 29.61 -169.99 -5.03 13.97 14 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 14 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 14 6 H -0.26 -5.56 7.11 56.52 0.40 -5.15 14 7 C -0.46 -12.22 8.12 -37.86 -0.31 -12.52 14 8 H 0.08 2.20 7.55 -52.49 -0.40 1.81 14 9 C 0.14 3.66 5.37 -106.67 -0.57 3.09 14 10 C 0.01 0.16 6.20 -38.36 -0.24 -0.07 14 11 O -0.47 -11.29 10.37 -18.87 -0.20 -11.49 14 12 C -0.08 -1.91 9.96 -39.52 -0.39 -2.30 14 13 C -0.29 -6.34 9.89 -39.14 -0.39 -6.73 14 14 C 0.24 5.29 6.74 -83.73 -0.56 4.72 14 15 N -0.89 -15.73 9.05 32.42 0.29 -15.44 14 16 C -0.19 -4.67 6.38 -38.64 -0.25 -4.92 14 17 Cl -0.12 -2.54 26.42 -51.86 -1.37 -3.91 14 18 H 0.28 6.89 8.30 -40.82 -0.34 6.55 14 19 H 0.34 6.85 9.06 45.56 0.41 7.26 14 20 H 0.10 2.02 8.06 -52.48 -0.42 1.60 14 21 H 0.10 1.86 8.06 -52.49 -0.42 1.44 14 22 H 0.39 5.65 8.84 -40.82 -0.36 5.29 14 23 H 0.39 6.56 7.47 -40.82 -0.31 6.26 14 LS Contribution 222.41 15.07 3.35 3.35 Total: -1.00 -28.99 222.41 -5.74 -34.73 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -0.63 Total: 14.49 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -2.79 Total: -16.45 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.92 Total: -34.68 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.20 Total: -11.49 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Atomic # 17 Polarization: -2.54 SS G_CDS: -1.37 Total: -3.91 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -28.99 -5.74 -34.73 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715684.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.576 kcal (2) G-P(sol) polarization free energy of solvation -28.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds