Wall clock time and date at job start Mon Mar 30 2020 02:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30932 * 1 3 3 Si 1.86797 * 120.00180 * 2 1 4 4 H 1.48500 * 109.47111 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47050 * 299.99989 * 3 2 1 6 6 H 1.48498 * 109.47241 * 59.99908 * 3 2 1 7 7 C 1.39905 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99841 * 200.84218 * 7 2 1 9 9 C 1.40914 * 120.00090 * 21.11375 * 7 2 1 10 10 C 1.41479 * 120.33125 * 218.10836 * 9 7 2 11 11 N 1.38962 * 120.20611 * 359.97438 * 10 9 7 12 12 C 1.38589 * 119.59092 * 179.74432 * 10 9 7 13 13 Cl 1.73602 * 119.85707 * 180.25448 * 12 10 9 14 14 C 1.38446 * 120.28539 * 0.51514 * 12 10 9 15 15 C 1.38586 * 120.68828 * 359.75983 * 14 12 10 16 16 C 1.38152 * 120.39709 * 359.97438 * 15 14 12 17 17 O 1.35722 * 120.15192 * 180.02562 * 16 15 14 18 18 H 0.96999 * 119.99637 * 0.02562 * 1 2 3 19 19 H 0.96996 * 119.99520 * 0.02562 * 11 10 9 20 20 H 0.96993 * 119.99847 * 179.97438 * 11 10 9 21 21 H 1.08001 * 119.65639 * 179.74325 * 14 12 10 22 22 H 1.08003 * 119.80151 * 179.97438 * 15 14 12 23 23 H 0.96703 * 113.99824 * 270.42662 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 3.7033 1.3463 0.0006 5 1 1.8846 2.3964 -1.2125 6 1 1.8846 2.3964 1.2125 7 6 2.0088 -1.2116 -0.0005 8 1 3.0357 -1.2424 0.3322 9 6 1.3752 -2.3908 -0.4407 10 6 1.6229 -3.6214 0.2120 11 7 2.4945 -3.6764 1.2929 12 6 0.9874 -4.7708 -0.2303 13 17 1.2813 -6.2832 0.5696 14 6 0.1232 -4.7190 -1.3107 15 6 -0.1236 -3.5210 -1.9623 16 6 0.4905 -2.3571 -1.5417 17 8 0.2448 -1.1865 -2.1831 18 1 -0.4849 0.8401 -0.0004 19 1 2.9349 -2.8694 1.6023 20 1 2.6619 -4.5216 1.7383 21 1 -0.3634 -5.6217 -1.6495 22 1 -0.8000 -3.4972 -2.8039 23 1 0.8445 -1.0088 -2.9206 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715708.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:54 Heat of formation + Delta-G solvation = -52.428776 kcal Electronic energy + Delta-G solvation = -12076.826489 eV Core-core repulsion = 9721.731300 eV Total energy + Delta-G solvation = -2355.095189 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.10530 -37.72458 -36.63526 -35.24302 -34.36553 -30.98616 -28.85269 -26.85140 -22.96045 -22.33052 -19.29457 -18.58151 -17.85648 -16.87664 -16.58755 -15.94903 -15.10710 -14.95123 -14.47636 -14.06165 -13.45151 -13.32439 -12.82348 -12.55302 -12.43733 -12.00071 -11.89787 -11.57239 -11.00172 -10.94959 -10.56233 -8.97530 -8.51689 -8.12848 -6.08981 0.82775 1.07351 1.45659 1.49210 1.56133 1.59954 2.31414 2.83191 3.41058 3.54224 4.11457 4.48519 4.71450 5.10714 5.26438 5.43437 5.49042 5.72482 6.05616 6.11155 6.41357 6.82441 7.00556 7.05905 7.35759 7.58085 8.56068 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.045226 B = 0.011232 C = 0.009422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.964333 B = 2492.275157 C = 2971.051652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.058 3.942 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.278 1.278 7 C -0.504 4.504 8 H 0.075 0.925 9 C 0.024 3.976 10 C 0.144 3.856 11 N -0.864 5.864 12 C -0.112 4.112 13 Cl -0.095 7.095 14 C -0.163 4.163 15 C -0.169 4.169 16 C 0.048 3.952 17 O -0.481 6.481 18 H 0.279 0.721 19 H 0.399 0.601 20 H 0.394 0.606 21 H 0.127 0.873 22 H 0.119 0.881 23 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.354 -3.398 -0.824 4.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.160 4.160 3 Si 0.790 3.210 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.203 1.203 7 C -0.534 4.534 8 H 0.093 0.907 9 C 0.018 3.982 10 C 0.039 3.961 11 N -0.406 5.406 12 C -0.144 4.144 13 Cl -0.066 7.066 14 C -0.183 4.183 15 C -0.189 4.189 16 C 0.000 4.000 17 O -0.288 6.288 18 H 0.089 0.911 19 H 0.228 0.772 20 H 0.223 0.777 21 H 0.145 0.855 22 H 0.137 0.863 23 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.681 -3.336 -0.352 4.295 hybrid contribution 0.685 0.585 0.022 0.902 sum 3.367 -2.751 -0.330 4.360 Atomic orbital electron populations 1.69853 1.09054 1.29654 1.34067 1.26296 0.94830 1.03112 0.91750 0.85407 0.79554 0.77898 0.78154 1.18342 1.19705 1.20336 1.19030 0.98982 0.92323 1.43048 0.90678 1.17726 0.95603 0.91418 0.93435 1.17809 0.95239 0.92484 0.90589 1.41953 1.51192 1.12697 1.34793 1.20160 1.08064 0.84663 1.01535 1.98222 1.95756 1.32413 1.80254 1.20192 1.02546 0.97708 0.97828 1.20881 1.03675 0.91866 1.02486 1.18464 1.02246 0.84642 0.94610 1.84888 1.57412 1.38116 1.48356 0.91113 0.77159 0.77698 0.85473 0.86346 0.78215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.68 11.28 21.83 0.25 -42.44 14 2 C 0.06 2.85 4.37 85.23 0.37 3.22 14 3 Si 0.97 38.09 29.61 68.60 2.03 40.12 14 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 14 5 H -0.27 -10.53 7.11 99.48 0.71 -9.83 14 6 H -0.28 -10.78 7.11 99.48 0.71 -10.07 14 7 C -0.50 -25.50 8.03 23.33 0.19 -25.31 14 8 H 0.08 3.64 7.22 -2.91 -0.02 3.61 14 9 C 0.02 1.21 5.38 -21.08 -0.11 1.10 14 10 C 0.14 6.66 6.78 38.89 0.26 6.92 14 11 N -0.86 -34.00 8.94 -50.39 -0.45 -34.45 14 12 C -0.11 -4.82 6.33 22.40 0.14 -4.67 14 13 Cl -0.09 -3.34 27.56 -2.72 -0.07 -3.41 14 14 C -0.16 -6.85 9.80 22.40 0.22 -6.63 14 15 C -0.17 -7.52 9.95 22.33 0.22 -7.30 14 16 C 0.05 2.36 6.19 23.00 0.14 2.51 14 17 O -0.48 -23.07 10.38 -90.44 -0.94 -24.01 14 18 H 0.28 13.83 8.30 -92.71 -0.77 13.06 14 19 H 0.40 15.30 7.31 -92.71 -0.68 14.63 14 20 H 0.39 13.51 7.47 -92.71 -0.69 12.82 14 21 H 0.13 4.64 8.06 -2.91 -0.02 4.62 14 22 H 0.12 4.73 8.06 -2.91 -0.02 4.71 14 23 H 0.36 14.30 9.06 -74.06 -0.67 13.63 14 Total: -1.00 -57.85 221.40 1.49 -56.36 By element: Atomic # 1 Polarization: 38.75 SS G_CDS: -0.76 Total: 37.99 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: 1.44 Total: -30.17 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -0.20 Total: -76.88 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.94 Total: -24.01 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Atomic # 17 Polarization: -3.34 SS G_CDS: -0.07 Total: -3.41 kcal Total: -57.85 1.49 -56.36 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715708.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.932 kcal (2) G-P(sol) polarization free energy of solvation -57.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds