Wall clock time and date at job start Mon Mar 30 2020 02:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30843 * 1 3 3 Si 1.86804 * 120.00154 * 2 1 4 4 H 1.48498 * 109.46914 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46914 * 119.99977 * 3 2 1 6 6 H 1.48499 * 109.47285 * 239.99971 * 3 2 1 7 7 C 1.39919 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00185 * 154.65561 * 7 2 1 9 9 C 1.41362 * 119.99896 * 334.64567 * 7 2 1 10 10 C 1.40723 * 120.19273 * 334.36586 * 9 7 2 11 11 C 1.38079 * 119.84656 * 179.71922 * 10 9 7 12 12 O 1.35919 * 119.87843 * 180.31362 * 11 10 9 13 13 C 1.39085 * 120.24691 * 0.57733 * 11 10 9 14 14 C 1.39080 * 120.39233 * 359.69739 * 13 11 10 15 15 N 1.39766 * 119.92770 * 180.02562 * 14 13 11 16 16 C 1.38516 * 120.14171 * 359.97438 * 14 13 11 17 17 Cl 1.73603 * 120.12171 * 180.02562 * 16 14 13 18 18 H 0.96999 * 120.00248 * 174.19440 * 1 2 3 19 19 H 1.07998 * 120.07360 * 359.97438 * 10 9 7 20 20 H 0.96701 * 114.00140 * 270.26330 * 12 11 10 21 21 H 1.08006 * 119.80255 * 179.71797 * 13 11 10 22 22 H 0.96997 * 120.00222 * 179.97438 * 15 14 13 23 23 H 0.97003 * 119.99952 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 1.2775 2.7464 0.0006 5 1 3.0962 1.6963 1.2125 6 1 3.0963 1.6964 -1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0101 -1.2567 -0.4009 9 6 1.4032 -2.3772 0.5232 10 6 0.3917 -2.2736 1.4960 11 6 -0.1982 -3.4165 1.9984 12 8 -1.1797 -3.3169 2.9334 13 6 0.2120 -4.6694 1.5554 14 6 1.2148 -4.7838 0.5985 15 7 1.6192 -6.0478 0.1598 16 6 1.8129 -3.6478 0.0785 17 17 3.0641 -3.7912 -1.1164 18 1 -0.4850 -0.8357 -0.0850 19 1 0.0747 -1.3023 1.8457 20 1 -0.8562 -3.3157 3.8447 21 1 -0.2511 -5.5588 1.9566 22 1 2.3182 -6.1288 -0.5078 23 1 1.2007 -6.8440 0.5230 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715864.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:44 Heat of formation + Delta-G solvation = -69.727620 kcal Electronic energy + Delta-G solvation = -11901.310579 eV Core-core repulsion = 9545.465255 eV Total energy + Delta-G solvation = -2355.845323 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.28490 -38.03704 -36.69684 -36.45756 -33.82289 -30.76556 -28.81195 -27.13277 -23.05477 -22.69849 -20.14986 -18.52168 -17.82953 -17.09857 -16.69273 -15.79390 -15.61826 -15.27810 -14.51208 -14.30027 -13.77094 -13.07818 -12.81928 -12.73407 -12.10046 -12.00264 -11.86575 -11.59482 -11.22277 -10.97689 -10.70185 -9.44034 -9.19371 -8.27281 -6.53333 0.69765 0.98022 1.52956 1.65901 1.82086 1.86447 2.33606 2.60963 3.05917 3.34264 3.73790 4.51348 4.71028 4.94094 5.13752 5.39943 5.56449 5.66708 5.85640 5.94576 6.11827 6.55474 6.64416 6.87502 7.05356 7.13924 8.00275 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.028142 B = 0.013937 C = 0.009670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.702668 B = 2008.603994 C = 2894.751668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.006 3.994 3 Si 1.115 2.885 4 H -0.272 1.272 5 H -0.261 1.261 6 H -0.258 1.258 7 C -0.527 4.527 8 H 0.083 0.917 9 C 0.119 3.881 10 C -0.299 4.299 11 C 0.172 3.828 12 O -0.514 6.514 13 C -0.337 4.337 14 C 0.272 3.728 15 N -0.866 5.866 16 C -0.242 4.242 17 Cl -0.100 7.100 18 H 0.285 0.715 19 H 0.095 0.905 20 H 0.402 0.598 21 H 0.128 0.872 22 H 0.399 0.601 23 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.445 -4.968 1.904 6.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.212 4.212 3 Si 0.931 3.069 4 H -0.196 1.196 5 H -0.185 1.185 6 H -0.182 1.182 7 C -0.554 4.554 8 H 0.101 0.899 9 C 0.115 3.885 10 C -0.320 4.320 11 C 0.127 3.873 12 O -0.327 6.327 13 C -0.361 4.361 14 C 0.165 3.835 15 N -0.408 5.408 16 C -0.275 4.275 17 Cl -0.072 7.072 18 H 0.098 0.902 19 H 0.113 0.887 20 H 0.260 0.740 21 H 0.146 0.854 22 H 0.229 0.771 23 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.896 -3.316 1.386 4.616 hybrid contribution 0.425 -2.109 0.135 2.155 sum 3.321 -5.425 1.520 6.540 Atomic orbital electron populations 1.70553 1.09059 1.33531 1.29600 1.28471 0.95561 1.07519 0.89680 0.83044 0.74823 0.69741 0.79270 1.19620 1.18538 1.18198 1.20808 1.03550 0.94491 1.36580 0.89869 1.17330 0.90039 0.91875 0.89254 1.21081 1.06756 0.97118 1.07054 1.18089 0.86707 0.91922 0.90622 1.84666 1.32684 1.96320 1.18996 1.20107 1.08151 0.96666 1.11193 1.17035 0.90837 0.85006 0.90574 1.42346 1.45534 1.03739 1.49183 1.20281 1.06385 0.93635 1.07179 1.98155 1.53649 1.97783 1.57646 0.90230 0.88663 0.74044 0.85369 0.77135 0.76455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.77 12.32 21.82 0.27 -43.50 14 2 C 0.01 0.28 4.94 85.25 0.42 0.70 14 3 Si 1.11 42.84 30.00 68.60 2.06 44.90 14 4 H -0.27 -10.28 7.11 99.48 0.71 -9.57 14 5 H -0.26 -9.43 7.11 99.48 0.71 -8.72 14 6 H -0.26 -9.15 7.11 99.48 0.71 -8.44 14 7 C -0.53 -28.01 8.45 23.45 0.20 -27.81 14 8 H 0.08 4.34 7.17 -2.91 -0.02 4.32 14 9 C 0.12 6.34 5.29 -21.30 -0.11 6.23 14 10 C -0.30 -15.51 7.87 22.84 0.18 -15.33 14 11 C 0.17 7.87 6.69 22.44 0.15 8.02 14 12 O -0.51 -20.35 13.49 -92.64 -1.25 -21.60 14 13 C -0.34 -14.22 9.83 22.68 0.22 -14.00 14 14 C 0.27 11.49 6.74 38.14 0.26 11.75 14 15 N -0.87 -27.81 9.04 -51.45 -0.47 -28.27 14 16 C -0.24 -11.62 6.39 22.94 0.15 -11.48 14 17 Cl -0.10 -4.25 26.20 -2.72 -0.07 -4.32 14 18 H 0.29 16.36 6.69 -92.71 -0.62 15.74 14 19 H 0.10 5.24 6.49 -2.91 -0.02 5.22 14 20 H 0.40 11.31 9.06 -74.06 -0.67 10.64 14 21 H 0.13 4.66 8.06 -2.91 -0.02 4.64 14 22 H 0.40 12.09 7.48 -92.71 -0.69 11.40 14 23 H 0.41 10.33 8.84 -92.71 -0.82 9.51 14 Total: -1.00 -61.21 222.37 1.26 -59.96 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: -0.75 Total: 34.75 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 1.46 Total: -41.91 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -0.20 Total: -71.78 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -1.25 Total: -21.60 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.06 Total: 44.90 kcal Atomic # 17 Polarization: -4.25 SS G_CDS: -0.07 Total: -4.32 kcal Total: -61.21 1.26 -59.96 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715864.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.771 kcal (2) G-P(sol) polarization free energy of solvation -61.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds