Wall clock time and date at job start Mon Mar 30 2020 02:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30927 * 1 3 3 Si 1.86799 * 120.00028 * 2 1 4 4 H 1.48502 * 109.47377 * 240.00307 * 3 2 1 5 5 H 1.48508 * 109.47121 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47413 * 119.99835 * 3 2 1 7 7 C 1.39834 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99740 * 163.64495 * 7 2 1 9 9 C 1.41077 * 119.99753 * 343.64059 * 7 2 1 10 10 C 1.40870 * 120.14632 * 333.98386 * 9 7 2 11 11 C 1.36638 * 119.80099 * 180.02562 * 10 9 7 12 12 O 1.35986 * 119.94385 * 179.97438 * 11 10 9 13 13 C 1.40133 * 120.10698 * 359.97438 * 11 10 9 14 14 N 1.39011 * 119.85606 * 180.02562 * 13 11 10 15 15 C 1.39313 * 120.29045 * 0.04406 * 13 11 10 16 16 C 1.36588 * 120.19294 * 359.95264 * 15 13 11 17 17 Cl 1.73604 * 120.04982 * 180.02562 * 16 15 13 18 18 H 0.97002 * 119.99920 * 5.03649 * 1 2 3 19 19 H 1.07999 * 120.09520 * 359.74778 * 10 9 7 20 20 H 0.96700 * 114.00289 * 90.00989 * 12 11 10 21 21 H 0.97000 * 119.99451 * 180.02562 * 14 13 11 22 22 H 0.97000 * 120.00039 * 0.02562 * 14 13 11 23 23 H 1.07994 * 119.90317 * 179.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 3.0970 1.6965 -1.2125 5 1 1.2782 2.7465 -0.0006 6 1 3.0970 1.6965 1.2125 7 6 2.0085 -1.2110 -0.0005 8 1 3.0557 -1.2297 -0.2639 9 6 1.3459 -2.4081 0.3431 10 6 0.2151 -2.3751 1.1825 11 6 -0.4209 -3.5389 1.5112 12 8 -1.5124 -3.5104 2.3217 13 6 0.0498 -4.7617 1.0144 14 7 -0.6015 -5.9426 1.3517 15 6 1.1680 -4.7993 0.1842 16 6 1.8129 -3.6432 -0.1521 17 17 3.2056 -3.6942 -1.1874 18 1 -0.4850 0.8368 -0.0737 19 1 -0.1453 -1.4331 1.5687 20 1 -2.3509 -3.4163 1.8492 21 1 -0.2772 -6.7902 1.0093 22 1 -1.3803 -5.9189 1.9295 23 1 1.5256 -5.7452 -0.1947 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715905.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:08 Heat of formation + Delta-G solvation = -58.593690 kcal Electronic energy + Delta-G solvation = -11865.610903 eV Core-core repulsion = 9510.248383 eV Total energy + Delta-G solvation = -2355.362520 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.32246 -37.69761 -36.54029 -35.99766 -34.04372 -30.50349 -29.92718 -26.27526 -23.27621 -22.42475 -19.69716 -18.17946 -17.75870 -17.56021 -16.65593 -15.79664 -15.26097 -14.97868 -14.41795 -13.92521 -13.78965 -13.09372 -12.96586 -12.75823 -12.40477 -12.07068 -11.89470 -11.45375 -11.17947 -11.02220 -10.51439 -9.21908 -8.58543 -8.29411 -6.09606 0.75333 1.03540 1.41461 1.51225 1.55284 1.83785 2.25306 2.70197 3.41711 3.55369 3.73718 4.40710 4.92384 5.07235 5.30901 5.42910 5.47299 5.68791 5.96052 6.11669 6.49878 6.75599 6.93529 6.95905 7.22896 7.35481 8.40867 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.029300 B = 0.013159 C = 0.009315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.414872 B = 2127.378026 C = 3005.343178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.036 3.964 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.483 4.483 8 H 0.079 0.921 9 C 0.060 3.940 10 C -0.157 4.157 11 C 0.044 3.956 12 O -0.505 6.505 13 C 0.099 3.901 14 N -0.870 5.870 15 C -0.152 4.152 16 C -0.113 4.113 17 Cl -0.102 7.102 18 H 0.286 0.714 19 H 0.113 0.887 20 H 0.388 0.612 21 H 0.399 0.601 22 H 0.399 0.601 23 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.242 -4.687 0.429 4.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.178 4.178 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.514 4.514 8 H 0.098 0.902 9 C 0.056 3.944 10 C -0.178 4.178 11 C -0.004 4.004 12 O -0.314 6.314 13 C -0.003 4.003 14 N -0.415 5.415 15 C -0.175 4.175 16 C -0.141 4.141 17 Cl -0.073 7.073 18 H 0.096 0.904 19 H 0.131 0.869 20 H 0.243 0.757 21 H 0.228 0.772 22 H 0.227 0.773 23 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.878 -4.527 0.825 4.684 hybrid contribution -0.155 0.558 -0.500 0.765 sum -1.032 -3.969 0.324 4.114 Atomic orbital electron populations 1.69848 1.08647 1.30378 1.36973 1.26602 0.95502 1.04044 0.91650 0.85353 0.78851 0.76273 0.79894 1.18646 1.19311 1.18733 1.19579 0.98055 0.91530 1.42210 0.90243 1.17441 0.92980 0.91995 0.91982 1.21044 0.99729 0.96846 1.00154 1.17778 0.92504 0.91438 0.98701 1.84731 1.15932 1.95822 1.34954 1.17479 0.95747 0.87179 0.99935 1.41579 1.35775 1.04505 1.59637 1.19775 0.97316 0.96880 1.03552 1.20510 0.95102 0.95078 1.03458 1.98195 1.42956 1.98742 1.67421 0.90365 0.86911 0.75709 0.77214 0.77254 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.11 10.96 21.81 0.24 -42.87 14 2 C 0.04 1.81 5.15 85.21 0.44 2.25 14 3 Si 0.97 38.98 29.59 68.60 2.03 41.01 14 4 H -0.26 -10.23 7.11 99.48 0.71 -9.53 14 5 H -0.27 -10.15 7.11 99.48 0.71 -9.44 14 6 H -0.26 -10.37 7.11 99.48 0.71 -9.67 14 7 C -0.48 -25.94 8.49 23.35 0.20 -25.74 14 8 H 0.08 4.20 7.12 -2.91 -0.02 4.18 14 9 C 0.06 3.20 5.56 -21.26 -0.12 3.08 14 10 C -0.16 -8.13 8.53 22.54 0.19 -7.94 14 11 C 0.04 1.97 6.68 22.36 0.15 2.12 14 12 O -0.50 -19.38 12.71 -93.39 -1.19 -20.56 14 13 C 0.10 4.04 6.78 38.72 0.26 4.30 14 14 N -0.87 -26.35 9.04 -50.78 -0.46 -26.81 14 15 C -0.15 -6.42 9.59 22.14 0.21 -6.21 14 16 C -0.11 -5.43 6.34 22.57 0.14 -5.29 14 17 Cl -0.10 -4.38 27.58 -2.72 -0.08 -4.46 14 18 H 0.29 13.53 8.31 -92.71 -0.77 12.76 14 19 H 0.11 6.21 6.22 -2.91 -0.02 6.19 14 20 H 0.39 11.45 9.06 -74.06 -0.67 10.78 14 21 H 0.40 9.94 8.83 -92.71 -0.82 9.12 14 22 H 0.40 10.79 8.16 -92.71 -0.76 10.04 14 23 H 0.13 4.68 8.06 -2.91 -0.02 4.66 14 Total: -1.00 -59.10 224.07 1.07 -58.03 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: -0.96 Total: 29.10 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 1.48 Total: -33.44 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -0.22 Total: -69.68 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -1.19 Total: -20.56 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Atomic # 17 Polarization: -4.38 SS G_CDS: -0.08 Total: -4.46 kcal Total: -59.10 1.07 -58.03 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715905.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.567 kcal (2) G-P(sol) polarization free energy of solvation -59.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds