Wall clock time and date at job start Mon Mar 30 2020 02:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30962 * 1 3 3 Si 1.86799 * 119.99866 * 2 1 4 4 H 1.48494 * 109.47059 * 239.99628 * 3 2 1 5 5 H 1.48504 * 109.47160 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46991 * 119.99237 * 3 2 1 7 7 C 1.39830 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99825 * 162.18251 * 7 2 1 9 9 C 1.40960 * 120.00499 * 341.91322 * 7 2 1 10 10 C 1.40862 * 120.19003 * 335.28539 * 9 7 2 11 11 C 1.36288 * 119.99664 * 179.97438 * 10 9 7 12 12 Cl 1.73607 * 119.79575 * 180.02562 * 11 10 9 13 13 C 1.39835 * 120.41202 * 0.02562 * 11 10 9 14 14 N 1.38957 * 119.80357 * 180.02562 * 13 11 10 15 15 C 1.39189 * 120.39393 * 0.02562 * 13 11 10 16 16 C 1.38049 * 119.98915 * 359.69728 * 15 13 11 17 17 O 1.35681 * 120.20228 * 180.29773 * 16 15 13 18 18 H 0.96996 * 120.00244 * 0.02562 * 1 2 3 19 19 H 1.07999 * 120.00423 * 359.96052 * 10 9 7 20 20 H 0.97001 * 120.00401 * 359.97438 * 14 13 11 21 21 H 0.97001 * 120.00008 * 179.97438 * 14 13 11 22 22 H 1.08004 * 120.00307 * 179.97438 * 15 13 11 23 23 H 0.96697 * 113.99993 * 270.25848 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2436 1.6177 0.0000 4 1 3.0974 1.6964 -1.2124 5 1 1.2785 2.7465 -0.0006 6 1 3.0972 1.6965 1.2126 7 6 2.0088 -1.2110 0.0005 8 1 3.0500 -1.2335 -0.2857 9 6 1.3563 -2.4014 0.3800 10 6 0.2311 -2.3538 1.2261 11 6 -0.3971 -3.5072 1.5901 12 17 -1.7838 -3.4423 2.6325 13 6 0.0685 -4.7426 1.1292 14 7 -0.5819 -5.9107 1.5079 15 6 1.1795 -4.8092 0.2934 16 6 1.8248 -3.6507 -0.0902 17 8 2.9046 -3.7102 -0.9097 18 1 -0.4850 0.8400 -0.0004 19 1 -0.1338 -1.4033 1.5865 20 1 -1.3562 -5.8677 2.0905 21 1 -0.2616 -6.7692 1.1895 22 1 1.5340 -5.7668 -0.0585 23 1 3.7478 -3.7939 -0.4438 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715930.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:10 Heat of formation + Delta-G solvation = -58.826979 kcal Electronic energy + Delta-G solvation = -11859.525993 eV Core-core repulsion = 9504.153357 eV Total energy + Delta-G solvation = -2355.372636 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.18754 -37.86689 -36.70561 -36.08447 -33.86537 -30.38595 -30.15759 -26.26823 -23.28708 -22.44768 -19.32990 -18.85258 -17.82622 -16.93289 -16.73687 -15.92081 -15.26155 -15.01049 -14.42949 -14.13539 -13.83479 -13.17607 -12.83848 -12.79763 -12.29774 -12.14487 -11.95420 -11.60400 -11.27450 -10.94536 -10.53647 -9.21380 -8.63184 -8.35146 -6.06954 0.72023 1.01337 1.41783 1.51518 1.53710 1.56287 2.25937 2.70520 3.29442 3.53590 3.98358 4.33209 4.93642 5.01263 5.27619 5.41433 5.50966 5.60765 5.88442 6.16456 6.48095 6.78052 6.93680 6.96492 7.26233 7.38633 8.41587 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.032925 B = 0.012036 C = 0.009047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.225491 B = 2325.700762 C = 3094.354129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.031 3.969 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.483 4.483 8 H 0.078 0.922 9 C 0.026 3.974 10 C -0.124 4.124 11 C -0.091 4.091 12 Cl -0.096 7.096 13 C 0.133 3.867 14 N -0.873 5.873 15 C -0.184 4.184 16 C 0.019 3.981 17 O -0.499 6.499 18 H 0.285 0.715 19 H 0.115 0.885 20 H 0.396 0.604 21 H 0.402 0.598 22 H 0.133 0.867 23 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 -5.009 3.474 6.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.182 4.182 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.184 1.184 7 C -0.513 4.513 8 H 0.096 0.904 9 C 0.022 3.978 10 C -0.144 4.144 11 C -0.121 4.121 12 Cl -0.068 7.068 13 C 0.029 3.971 14 N -0.418 5.418 15 C -0.207 4.207 16 C -0.027 4.027 17 O -0.309 6.309 18 H 0.096 0.904 19 H 0.133 0.867 20 H 0.225 0.775 21 H 0.231 0.769 22 H 0.151 0.849 23 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -0.009 -4.745 3.081 5.658 hybrid contribution 0.233 0.484 0.438 0.693 sum 0.224 -4.261 3.519 5.531 Atomic orbital electron populations 1.69910 1.08821 1.30318 1.37170 1.26673 0.95453 1.04325 0.91751 0.85292 0.78731 0.76007 0.79912 1.18713 1.19621 1.18367 1.19389 0.98444 0.92004 1.41484 0.90435 1.18004 0.93971 0.93351 0.92523 1.20659 0.98060 0.96050 0.99669 1.20151 0.94241 0.94214 1.03518 1.98226 1.43178 1.98588 1.66796 1.16883 0.95026 0.85937 0.99209 1.41813 1.36181 1.04663 1.59136 1.20445 0.98934 0.97890 1.03458 1.18589 0.93750 0.91915 0.98457 1.84684 1.15947 1.95917 1.34330 0.90410 0.86701 0.77535 0.76862 0.84908 0.76398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.57 10.98 21.81 0.24 -44.33 14 2 C 0.03 1.59 5.12 85.21 0.44 2.03 14 3 Si 0.98 38.95 29.60 68.60 2.03 40.98 14 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 14 5 H -0.27 -10.33 7.11 99.48 0.71 -9.62 14 6 H -0.26 -9.97 7.11 99.48 0.71 -9.27 14 7 C -0.48 -26.01 8.70 23.32 0.20 -25.80 14 8 H 0.08 4.02 7.65 -2.91 -0.02 4.00 14 9 C 0.03 1.36 5.58 -21.17 -0.12 1.25 14 10 C -0.12 -6.44 8.38 22.46 0.19 -6.25 14 11 C -0.09 -4.14 6.30 22.20 0.14 -4.00 14 12 Cl -0.10 -3.71 27.53 -2.72 -0.07 -3.78 14 13 C 0.13 5.45 6.76 38.63 0.26 5.71 14 14 N -0.87 -27.25 9.00 -51.07 -0.46 -27.71 14 15 C -0.18 -7.73 9.80 22.45 0.22 -7.51 14 16 C 0.02 0.92 6.73 23.02 0.15 1.08 14 17 O -0.50 -21.73 12.79 -89.99 -1.15 -22.88 14 18 H 0.29 13.94 8.30 -92.71 -0.77 13.17 14 19 H 0.12 6.34 6.17 -2.91 -0.02 6.33 14 20 H 0.40 11.51 7.45 -92.71 -0.69 10.82 14 21 H 0.40 10.10 8.83 -92.71 -0.82 9.29 14 22 H 0.13 4.73 8.06 -2.91 -0.02 4.71 14 23 H 0.38 12.64 9.06 -74.06 -0.67 11.97 14 Total: -1.00 -60.51 224.11 1.18 -59.33 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -0.89 Total: 31.90 kcal Atomic # 6 Polarization: -34.99 SS G_CDS: 1.49 Total: -33.51 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -0.22 Total: -72.04 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -1.15 Total: -22.88 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Atomic # 17 Polarization: -3.71 SS G_CDS: -0.07 Total: -3.78 kcal Total: -60.51 1.18 -59.33 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715930.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.503 kcal (2) G-P(sol) polarization free energy of solvation -60.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds