Wall clock time and date at job start Mon Mar 30 2020 02:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47630 * 111.00001 * 2 1 4 4 C 1.50812 * 108.03388 * 150.30873 * 3 2 1 5 5 C 1.53818 * 111.62054 * 95.06986 * 4 3 2 6 6 C 1.54170 * 111.96476 * 319.04661 * 5 4 3 7 7 C 1.50760 * 112.61636 * 318.47758 * 6 5 4 8 8 H 1.08999 * 109.61524 * 333.09996 * 7 6 5 9 9 C 1.52998 * 109.54648 * 212.87721 * 7 6 5 10 10 N 1.46492 * 109.47482 * 175.43921 * 9 7 6 11 11 C 1.36935 * 120.00376 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99724 * 0.02562 * 11 10 9 13 13 C 1.38810 * 120.00063 * 180.02562 * 11 10 9 14 14 N 1.31622 * 119.99887 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00212 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.47297 * 89.99941 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00122 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00115 * 15 13 11 19 19 C 1.39773 * 111.00028 * 231.09348 * 2 1 3 20 20 H 1.08995 * 109.46927 * 188.90717 * 1 2 3 21 21 H 1.08999 * 109.46888 * 308.90870 * 1 2 3 22 22 H 1.09001 * 109.46729 * 68.90623 * 1 2 3 23 23 H 1.09000 * 109.74981 * 269.94169 * 3 2 1 24 24 H 1.08997 * 109.74923 * 30.67391 * 3 2 1 25 25 H 1.09009 * 109.05245 * 215.61923 * 4 3 2 26 26 H 1.08998 * 109.05446 * 334.58613 * 4 3 2 27 27 H 1.08995 * 108.97698 * 79.68378 * 5 4 3 28 28 H 1.08992 * 108.98320 * 198.40544 * 5 4 3 29 29 H 1.09005 * 108.85221 * 197.67412 * 6 5 4 30 30 H 1.08992 * 108.85872 * 79.28865 * 6 5 4 31 31 H 1.08999 * 109.46602 * 55.44040 * 9 7 6 32 32 H 1.08998 * 109.47239 * 295.44691 * 9 7 6 33 33 H 0.97009 * 119.99477 * 0.02562 * 10 9 7 34 34 H 0.97006 * 119.99732 * 180.02562 * 14 13 11 35 35 H 1.09006 * 109.02697 * 68.54744 * 19 2 1 36 36 H 1.08999 * 109.02223 * 309.72247 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9981 1.3782 0.0000 4 6 3.3285 1.3677 0.7103 5 6 4.4984 1.2352 -0.2795 6 6 4.1925 0.2235 -1.4018 7 6 3.4972 -1.0138 -0.8934 8 1 3.7614 -1.1789 0.1511 9 6 3.9277 -2.2221 -1.7273 10 7 3.3371 -3.4391 -1.1650 11 6 3.5844 -4.6530 -1.7484 12 1 4.2153 -4.7132 -2.6229 13 6 3.0242 -5.8060 -1.2159 14 7 3.2624 -6.9728 -1.7764 15 14 1.9336 -5.7018 0.2970 16 1 0.5223 -5.5079 -0.1225 17 1 2.3619 -4.5553 1.1381 18 1 2.0494 -6.9593 1.0784 19 6 1.9700 -0.8195 -1.0154 20 1 -0.3633 -1.0152 0.1591 21 1 -0.3633 0.6455 0.7997 22 1 -0.3633 0.3699 -0.9588 23 1 2.1311 1.7217 -1.0259 24 1 1.3064 2.0383 0.5233 25 1 3.4400 2.2960 1.2708 26 1 3.3544 0.5279 1.4047 27 1 4.6976 2.2097 -0.7252 28 1 5.3854 0.9066 0.2620 29 1 5.1288 -0.0689 -1.8773 30 1 3.5571 0.7040 -2.1457 31 1 5.0144 -2.3053 -1.7123 32 1 3.5874 -2.0943 -2.7549 33 1 2.7707 -3.3849 -0.3793 34 1 2.8707 -7.7785 -1.4044 35 1 1.7455 -0.3664 -1.9811 36 1 1.4825 -1.7928 -0.9594 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642864738.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:33 Heat of formation + Delta-G solvation = 10.141653 kcal Electronic energy + Delta-G solvation = -14885.384644 eV Core-core repulsion = 12597.511494 eV Total energy + Delta-G solvation = -2287.873151 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.46442 -35.41967 -34.23494 -32.39051 -30.51575 -27.74218 -26.30537 -24.83582 -23.12680 -21.50880 -20.27425 -19.23968 -17.49712 -15.73023 -15.50691 -14.99062 -14.70414 -14.34844 -13.77467 -13.54312 -13.02698 -12.72407 -12.51188 -12.16696 -12.07671 -11.87556 -11.39523 -11.14767 -10.87902 -10.83056 -10.60780 -10.23588 -10.15837 -10.03550 -9.95057 -9.51872 -8.82924 -8.07017 -7.15501 -5.71506 -3.05973 3.42401 3.47762 3.49801 4.06693 4.64955 4.84699 4.89966 5.06219 5.17700 5.26877 5.36587 5.43183 5.56435 5.60227 5.64039 5.70725 5.76939 5.88634 5.92664 5.97373 6.03229 6.12620 6.23038 6.32423 6.36574 6.47739 6.53428 6.75425 6.92963 7.25705 7.57590 8.06062 8.48107 9.28132 10.00770 10.21726 11.47123 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036056 B = 0.008825 C = 0.007701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.376446 B = 3171.976070 C = 3634.890337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.559 5.559 3 C 0.066 3.934 4 C -0.119 4.119 5 C -0.116 4.116 6 C -0.113 4.113 7 C -0.094 4.094 8 H 0.081 0.919 9 C 0.164 3.836 10 N -0.756 5.756 11 C -0.242 4.242 12 H 0.089 0.911 13 C 0.003 3.997 14 N -0.936 5.936 15 Si 0.882 3.118 16 H -0.285 1.285 17 H -0.274 1.274 18 H -0.291 1.291 19 C 0.078 3.922 20 H 0.067 0.933 21 H 0.063 0.937 22 H 0.022 0.978 23 H 0.040 0.960 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.028 0.972 32 H 0.024 0.976 33 H 0.362 0.638 34 H 0.258 0.742 35 H 0.016 0.984 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.477 18.540 4.002 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.283 5.283 3 C -0.061 4.061 4 C -0.157 4.157 5 C -0.153 4.153 6 C -0.151 4.151 7 C -0.113 4.113 8 H 0.099 0.901 9 C 0.037 3.963 10 N -0.402 5.402 11 C -0.372 4.372 12 H 0.107 0.893 13 C -0.193 4.193 14 N -0.585 5.585 15 Si 0.713 3.287 16 H -0.212 1.212 17 H -0.201 1.201 18 H -0.218 1.218 19 C -0.051 4.051 20 H 0.086 0.914 21 H 0.082 0.918 22 H 0.040 0.960 23 H 0.058 0.942 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.195 0.805 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.227 18.171 4.231 18.790 hybrid contribution -1.056 0.211 0.281 1.112 sum -3.283 18.382 4.512 19.210 Atomic orbital electron populations 1.22342 0.87164 1.02453 0.99735 1.58839 1.07131 1.11953 1.50352 1.21801 0.96338 0.88585 0.99394 1.21417 0.93712 1.01995 0.98579 1.21898 0.98111 0.98530 0.96786 1.21417 1.00710 0.95322 0.97676 1.21257 0.93788 0.94829 1.01474 0.90106 1.20681 0.95984 0.84683 0.95000 1.42776 1.59968 1.03284 1.34134 1.19086 1.25457 0.82969 1.09658 0.89302 1.24665 1.00518 0.95200 0.98902 1.69710 1.48933 0.97483 1.42345 0.86560 0.81158 0.76894 0.84109 1.21152 1.20050 1.21787 1.21031 0.95932 0.97242 0.90933 0.91380 0.91774 0.95974 0.94150 0.91494 0.92391 0.90491 0.92746 0.92190 0.91803 0.92775 0.95411 0.95765 0.80458 0.93150 0.96571 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.46 60.07 0.57 0.95 16 2 N -0.56 -7.88 4.19 -248.32 -1.04 -8.92 16 3 C 0.07 0.77 5.37 -4.52 -0.02 0.74 16 4 C -0.12 -1.35 5.41 -27.40 -0.15 -1.50 16 5 C -0.12 -1.32 5.92 -25.69 -0.15 -1.47 16 6 C -0.11 -1.51 4.87 -27.24 -0.13 -1.64 16 7 C -0.09 -1.54 1.94 -90.99 -0.18 -1.72 16 8 H 0.08 1.41 7.11 -51.93 -0.37 1.04 16 9 C 0.16 3.31 5.48 -4.05 -0.02 3.28 16 10 N -0.76 -18.63 4.94 -59.92 -0.30 -18.93 16 11 C -0.24 -7.06 10.47 -15.06 -0.16 -7.21 16 12 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 13 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 14 N -0.94 -30.05 13.97 55.49 0.78 -29.28 16 15 Si 0.88 22.74 27.73 -169.99 -4.71 18.02 16 16 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 17 H -0.27 -6.74 6.52 56.52 0.37 -6.38 16 18 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 19 C 0.08 1.25 4.25 -6.74 -0.03 1.22 16 20 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 21 H 0.06 0.67 7.83 -51.93 -0.41 0.26 16 22 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 23 H 0.04 0.48 6.66 -51.93 -0.35 0.13 16 24 H 0.07 0.68 7.62 -51.93 -0.40 0.28 16 25 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.08 1.01 7.26 -51.93 -0.38 0.63 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.84 7.61 -51.93 -0.40 0.45 16 30 H 0.05 0.70 6.58 -51.93 -0.34 0.36 16 31 H 0.03 0.57 7.98 -51.93 -0.41 0.16 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.36 8.80 4.82 -40.82 -0.20 8.60 16 34 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 35 H 0.02 0.26 7.55 -51.93 -0.39 -0.13 16 36 H 0.08 1.48 6.72 -51.93 -0.35 1.13 16 LS Contribution 273.11 15.07 4.12 4.12 Total: -1.00 -31.43 273.11 -7.64 -39.07 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.11 Total: 3.28 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -0.37 Total: -7.36 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.56 Total: -57.12 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.71 Total: 18.02 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.43 -7.64 -39.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642864738.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.208 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds