Wall clock time and date at job start Mon Mar 30 2020 02:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47630 * 111.00001 * 2 1 4 4 C 1.50812 * 108.03388 * 150.30873 * 3 2 1 5 5 C 1.53818 * 111.62054 * 95.06986 * 4 3 2 6 6 C 1.54170 * 111.96476 * 319.04661 * 5 4 3 7 7 C 1.50760 * 112.61636 * 318.47758 * 6 5 4 8 8 H 1.08999 * 109.61524 * 333.09996 * 7 6 5 9 9 C 1.52998 * 109.54648 * 212.87721 * 7 6 5 10 10 N 1.46492 * 109.47482 * 175.43921 * 9 7 6 11 11 C 1.36935 * 120.00376 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99724 * 0.02562 * 11 10 9 13 13 C 1.38810 * 120.00063 * 180.02562 * 11 10 9 14 14 N 1.31622 * 119.99887 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00212 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.47297 * 89.99941 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00122 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00115 * 15 13 11 19 19 C 1.39773 * 111.00028 * 231.09348 * 2 1 3 20 20 H 1.08995 * 109.46927 * 188.90717 * 1 2 3 21 21 H 1.08999 * 109.46888 * 308.90870 * 1 2 3 22 22 H 1.09001 * 109.46729 * 68.90623 * 1 2 3 23 23 H 1.09000 * 109.74981 * 269.94169 * 3 2 1 24 24 H 1.08997 * 109.74923 * 30.67391 * 3 2 1 25 25 H 1.09009 * 109.05245 * 215.61923 * 4 3 2 26 26 H 1.08998 * 109.05446 * 334.58613 * 4 3 2 27 27 H 1.08995 * 108.97698 * 79.68378 * 5 4 3 28 28 H 1.08992 * 108.98320 * 198.40544 * 5 4 3 29 29 H 1.09005 * 108.85221 * 197.67412 * 6 5 4 30 30 H 1.08992 * 108.85872 * 79.28865 * 6 5 4 31 31 H 1.08999 * 109.46602 * 55.44040 * 9 7 6 32 32 H 1.08998 * 109.47239 * 295.44691 * 9 7 6 33 33 H 0.97009 * 119.99477 * 0.02562 * 10 9 7 34 34 H 0.97006 * 119.99732 * 180.02562 * 14 13 11 35 35 H 1.09006 * 109.02697 * 68.54744 * 19 2 1 36 36 H 1.08999 * 109.02223 * 309.72247 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9981 1.3782 0.0000 4 6 3.3285 1.3677 0.7103 5 6 4.4984 1.2352 -0.2795 6 6 4.1925 0.2235 -1.4018 7 6 3.4972 -1.0138 -0.8934 8 1 3.7614 -1.1789 0.1511 9 6 3.9277 -2.2221 -1.7273 10 7 3.3371 -3.4391 -1.1650 11 6 3.5844 -4.6530 -1.7484 12 1 4.2153 -4.7132 -2.6229 13 6 3.0242 -5.8060 -1.2159 14 7 3.2624 -6.9728 -1.7764 15 14 1.9336 -5.7018 0.2970 16 1 0.5223 -5.5079 -0.1225 17 1 2.3619 -4.5553 1.1381 18 1 2.0494 -6.9593 1.0784 19 6 1.9700 -0.8195 -1.0154 20 1 -0.3633 -1.0152 0.1591 21 1 -0.3633 0.6455 0.7997 22 1 -0.3633 0.3699 -0.9588 23 1 2.1311 1.7217 -1.0259 24 1 1.3064 2.0383 0.5233 25 1 3.4400 2.2960 1.2708 26 1 3.3544 0.5279 1.4047 27 1 4.6976 2.2097 -0.7252 28 1 5.3854 0.9066 0.2620 29 1 5.1288 -0.0689 -1.8773 30 1 3.5571 0.7040 -2.1457 31 1 5.0144 -2.3053 -1.7123 32 1 3.5874 -2.0943 -2.7549 33 1 2.7707 -3.3849 -0.3793 34 1 2.8707 -7.7785 -1.4044 35 1 1.7455 -0.3664 -1.9811 36 1 1.4825 -1.7928 -0.9594 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642864738.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:33 Heat of formation + Delta-G solvation = -11.283713 kcal Electronic energy + Delta-G solvation = -14886.313718 eV Core-core repulsion = 12597.511494 eV Total energy + Delta-G solvation = -2288.802224 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.59490 -37.06946 -35.45487 -34.11715 -32.36217 -28.80083 -27.80500 -26.02787 -24.65309 -23.16647 -21.52056 -20.43346 -19.50161 -16.89267 -16.76304 -16.56184 -16.00755 -15.73299 -15.39720 -14.84972 -14.59124 -14.29350 -13.94538 -13.40049 -13.31596 -13.05159 -12.94764 -12.81460 -12.37233 -12.15046 -11.95436 -11.79276 -11.63761 -11.41589 -11.21210 -11.14010 -10.95895 -9.30426 -9.12982 -8.04592 -5.37492 1.36674 1.38829 1.47165 2.46694 3.02372 3.26887 3.60109 3.78342 3.97451 4.03002 4.19327 4.26371 4.38504 4.49213 4.55676 4.62019 4.71153 4.78440 4.82430 4.90724 4.95703 5.00765 5.03826 5.12153 5.27417 5.31654 5.37013 5.51704 5.58631 5.73891 6.19931 6.24837 6.46726 7.06195 7.83031 8.02934 9.17093 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036056 B = 0.008825 C = 0.007701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.376446 B = 3171.976070 C = 3634.890337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.573 5.573 3 C 0.065 3.935 4 C -0.117 4.117 5 C -0.112 4.112 6 C -0.111 4.111 7 C -0.082 4.082 8 H 0.071 0.929 9 C 0.161 3.839 10 N -0.757 5.757 11 C -0.237 4.237 12 H 0.056 0.944 13 C -0.063 4.063 14 N -0.983 5.983 15 Si 0.954 3.046 16 H -0.277 1.277 17 H -0.255 1.255 18 H -0.293 1.293 19 C 0.088 3.912 20 H 0.055 0.945 21 H 0.086 0.914 22 H 0.027 0.973 23 H 0.043 0.957 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.025 0.975 32 H 0.021 0.979 33 H 0.366 0.634 34 H 0.258 0.742 35 H 0.017 0.983 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.198 21.140 5.421 22.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.297 5.297 3 C -0.061 4.061 4 C -0.155 4.155 5 C -0.149 4.149 6 C -0.149 4.149 7 C -0.101 4.101 8 H 0.090 0.910 9 C 0.034 3.966 10 N -0.403 5.403 11 C -0.368 4.368 12 H 0.074 0.926 13 C -0.254 4.254 14 N -0.634 5.634 15 Si 0.781 3.219 16 H -0.203 1.203 17 H -0.180 1.180 18 H -0.219 1.219 19 C -0.042 4.042 20 H 0.074 0.926 21 H 0.105 0.895 22 H 0.046 0.954 23 H 0.061 0.939 24 H 0.106 0.894 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.200 0.800 34 H 0.067 0.933 35 H 0.035 0.965 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.942 20.829 5.651 21.782 hybrid contribution -0.778 -0.563 -0.245 0.992 sum -3.721 20.266 5.406 21.302 Atomic orbital electron populations 1.22386 0.86107 1.02341 1.00906 1.58823 1.08208 1.13262 1.49399 1.21906 0.96918 0.87348 0.99915 1.21415 0.93446 1.02407 0.98258 1.21882 0.98197 0.98756 0.96106 1.21380 1.00379 0.94421 0.98680 1.21108 0.94598 0.94372 1.00041 0.91026 1.20859 0.95540 0.84711 0.95451 1.42780 1.60204 1.03166 1.34139 1.19078 1.24143 0.84939 1.08591 0.92573 1.25490 1.02616 0.94707 1.02594 1.69886 1.50721 0.98355 1.44431 0.85419 0.79164 0.77280 0.80036 1.20265 1.18020 1.21909 1.20821 0.95220 0.96433 0.91749 0.92611 0.89517 0.95436 0.93916 0.89392 0.89981 0.92446 0.90582 0.92163 0.91826 0.92140 0.95663 0.96087 0.80048 0.93272 0.96534 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.46 127.69 1.21 1.87 16 2 N -0.57 -14.87 4.19 -939.56 -3.94 -18.80 16 3 C 0.07 1.31 5.37 85.45 0.46 1.77 16 4 C -0.12 -2.27 5.41 30.16 0.16 -2.11 16 5 C -0.11 -2.19 5.92 31.27 0.18 -2.01 16 6 C -0.11 -2.72 4.87 30.26 0.15 -2.57 16 7 C -0.08 -2.58 1.94 -11.03 -0.02 -2.60 16 8 H 0.07 2.41 7.11 -2.39 -0.02 2.40 16 9 C 0.16 6.47 5.48 86.38 0.47 6.95 16 10 N -0.76 -37.38 4.94 -343.48 -1.70 -39.08 16 11 C -0.24 -14.09 10.47 84.03 0.88 -13.21 16 12 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 13 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 14 N -0.98 -64.58 13.97 21.65 0.30 -64.28 16 15 Si 0.95 47.22 27.73 68.60 1.90 49.12 16 16 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 17 H -0.26 -11.70 6.52 99.48 0.65 -11.05 16 18 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 19 C 0.09 2.71 4.25 88.08 0.37 3.09 16 20 H 0.05 1.36 8.04 -2.39 -0.02 1.34 16 21 H 0.09 1.52 7.83 -2.39 -0.02 1.50 16 22 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 23 H 0.04 0.85 6.66 -2.39 -0.02 0.84 16 24 H 0.09 1.41 7.62 -2.39 -0.02 1.39 16 25 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.06 1.36 7.26 -2.39 -0.02 1.34 16 27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.57 7.61 -2.38 -0.02 1.55 16 30 H 0.06 1.42 6.58 -2.39 -0.02 1.40 16 31 H 0.03 1.04 7.98 -2.39 -0.02 1.02 16 32 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.37 17.48 4.82 -92.70 -0.45 17.03 16 34 H 0.26 16.10 8.31 -92.70 -0.77 15.33 16 35 H 0.02 0.51 7.55 -2.38 -0.02 0.49 16 36 H 0.05 1.85 6.72 -2.39 -0.02 1.84 16 Total: -1.00 -68.00 273.11 1.44 -66.56 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.53 Total: 18.66 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 4.34 Total: -12.19 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -5.33 Total: -122.16 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.90 Total: 49.12 kcal Total: -68.00 1.44 -66.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642864738.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.280 kcal (2) G-P(sol) polarization free energy of solvation -68.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds