Wall clock time and date at job start Mon Mar 30 2020 02:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47525 * 2 1 4 4 C 1.36935 * 120.00308 * 273.30325 * 3 2 1 5 5 H 1.07998 * 120.00291 * 179.10325 * 4 3 2 6 6 C 1.38806 * 119.99826 * 359.09832 * 4 3 2 7 7 N 1.31625 * 119.99988 * 30.43165 * 6 4 3 8 8 Si 1.86798 * 120.00463 * 210.42923 * 6 4 3 9 9 H 1.48499 * 109.46808 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47248 * 120.00081 * 8 6 4 11 11 H 1.48500 * 109.47523 * 240.00335 * 8 6 4 12 12 C 1.46507 * 119.99850 * 93.30136 * 3 2 1 13 13 C 1.52998 * 109.47157 * 94.11162 * 12 3 2 14 14 H 1.09004 * 110.28907 * 51.94438 * 13 12 3 15 15 C 1.54259 * 110.32372 * 174.07080 * 13 12 3 16 16 C 1.54380 * 105.06154 * 118.89341 * 15 13 12 17 17 N 1.48570 * 104.59238 * 23.85436 * 16 15 13 18 18 C 1.46901 * 110.99934 * 200.95877 * 17 16 15 19 19 C 1.48562 * 104.21996 * 320.51679 * 17 16 15 20 20 H 1.09007 * 109.46951 * 291.72262 * 1 2 3 21 21 H 1.08998 * 109.46845 * 51.71670 * 1 2 3 22 22 H 1.08995 * 109.47744 * 171.72043 * 1 2 3 23 23 H 1.09003 * 109.46766 * 120.00550 * 2 1 3 24 24 H 1.08999 * 109.47065 * 239.99583 * 2 1 3 25 25 H 0.96995 * 120.00318 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.46649 * 214.11095 * 12 3 2 27 27 H 1.08999 * 109.47140 * 334.10552 * 12 3 2 28 28 H 1.08995 * 110.32878 * 237.79221 * 15 13 12 29 29 H 1.08999 * 110.32602 * 0.02562 * 15 13 12 30 30 H 1.08997 * 110.41591 * 142.63040 * 16 15 13 31 31 H 1.09000 * 110.41581 * 265.07891 * 16 15 13 32 32 H 1.08996 * 109.46761 * 60.12805 * 18 17 16 33 33 H 1.08998 * 109.46664 * 180.12224 * 18 17 16 34 34 H 1.09000 * 109.46860 * 300.12443 * 18 17 16 35 35 H 1.09000 * 110.41017 * 280.70434 * 19 17 16 36 36 H 1.08991 * 110.40869 * 158.26015 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1823 2.0495 -1.1839 5 1 2.5285 3.0724 -1.1831 6 6 1.9034 1.4121 -2.3850 7 7 0.9752 0.4802 -2.4356 8 14 2.8454 1.8767 -3.9297 9 1 3.8279 2.9429 -3.6084 10 1 3.5618 0.6846 -4.4501 11 1 1.8958 2.3717 -4.9586 12 6 2.3315 2.0474 1.2667 13 6 3.8217 1.8858 1.5732 14 1 4.4198 2.2010 0.7181 15 6 4.2032 2.7036 2.8243 16 6 4.7176 1.6632 3.8422 17 7 5.1631 0.5151 3.0112 18 6 5.2126 -0.7207 3.8039 19 6 4.1378 0.4200 1.9403 20 1 -0.3633 0.3804 0.9548 21 1 -0.3633 0.6367 -0.8067 22 1 -0.3634 -1.0169 -0.1480 23 1 1.8933 -0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 0.7801 0.0351 -3.2750 26 1 2.0893 3.1073 1.1892 27 1 1.7449 1.5983 2.0681 28 1 4.9896 3.4189 2.5838 29 1 3.3286 3.2198 3.2203 30 1 5.5547 2.0687 4.4103 31 1 3.9143 1.3579 4.5128 32 1 4.2199 -0.9404 4.1966 33 1 5.5438 -1.5447 3.1718 34 1 5.9109 -0.5939 4.6312 35 1 3.2438 -0.0797 2.3133 36 1 4.5385 -0.1103 1.0765 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687801298.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:47 Heat of formation + Delta-G solvation = 31.066757 kcal Electronic energy + Delta-G solvation = -15029.102603 eV Core-core repulsion = 12742.136833 eV Total energy + Delta-G solvation = -2286.965770 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.74198 -35.85178 -32.62439 -30.86176 -29.40365 -28.18782 -26.07444 -24.35374 -22.85658 -20.83068 -20.28753 -19.38361 -16.50316 -15.79124 -15.07274 -14.69984 -14.18568 -13.69434 -13.49952 -13.13375 -12.76643 -12.27240 -11.92414 -11.54101 -11.48685 -11.18474 -11.15437 -11.01355 -10.81374 -10.57578 -10.34024 -10.16400 -10.06687 -9.73238 -9.56403 -9.28920 -8.25321 -8.19286 -6.85817 -5.73374 -2.95185 3.43951 3.54229 3.56365 4.33779 4.57473 5.06315 5.07754 5.28003 5.39909 5.50150 5.59614 5.66529 5.78378 5.84663 5.94113 6.11374 6.16530 6.23975 6.34069 6.48591 6.53053 6.61988 6.80097 6.93661 7.03386 7.12552 7.16456 7.24662 7.30454 7.75023 7.83707 8.20226 8.38614 9.31044 9.95543 10.40351 11.30414 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034829 B = 0.009058 C = 0.008374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.727617 B = 3090.458658 C = 3342.869941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.170 3.830 3 N -0.601 5.601 4 C -0.248 4.248 5 H 0.075 0.925 6 C 0.001 3.999 7 N -0.890 5.890 8 Si 0.881 3.119 9 H -0.280 1.280 10 H -0.291 1.291 11 H -0.295 1.295 12 C 0.162 3.838 13 C -0.110 4.110 14 H 0.080 0.920 15 C -0.120 4.120 16 C 0.033 3.967 17 N -0.523 5.523 18 C 0.015 3.985 19 C 0.050 3.950 20 H 0.002 0.998 21 H 0.092 0.908 22 H 0.020 0.980 23 H 0.005 0.995 24 H 0.077 0.923 25 H 0.249 0.751 26 H 0.043 0.957 27 H 0.035 0.965 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.025 0.975 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.041 0.959 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.830 -0.130 10.588 11.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.045 3.955 3 N -0.323 5.323 4 C -0.376 4.376 5 H 0.093 0.907 6 C -0.196 4.196 7 N -0.535 5.535 8 Si 0.710 3.290 9 H -0.205 1.205 10 H -0.217 1.217 11 H -0.223 1.223 12 C 0.034 3.966 13 C -0.132 4.132 14 H 0.099 0.901 15 C -0.159 4.159 16 C -0.095 4.095 17 N -0.246 5.246 18 C -0.134 4.134 19 C -0.078 4.078 20 H 0.021 0.979 21 H 0.110 0.890 22 H 0.039 0.961 23 H 0.024 0.976 24 H 0.095 0.905 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.302 -0.163 10.236 11.529 hybrid contribution -0.361 -0.068 -0.508 0.627 sum 4.941 -0.231 9.727 10.913 Atomic orbital electron populations 1.22304 0.99244 0.99458 0.99232 1.20811 0.92497 0.84611 0.97579 1.44214 1.75830 1.11101 1.01114 1.19230 1.38024 0.96947 0.83417 0.90715 1.24653 0.98682 0.99123 0.97186 1.70325 1.28432 1.29724 1.25053 0.86534 0.80795 0.77593 0.84043 1.20539 1.21750 1.22280 1.20780 0.91135 0.96314 0.88329 1.22637 1.00735 0.93124 0.96744 0.90120 1.22346 1.00300 0.97508 0.95737 1.23082 0.98296 0.92528 0.95591 1.65395 1.45312 1.03463 1.10480 1.22460 0.99860 0.93230 0.97820 1.23132 0.92350 0.98075 0.94204 0.97903 0.88957 0.96108 0.97643 0.90477 0.94017 0.93894 0.94671 0.91670 0.91634 0.90962 0.94388 0.95680 0.91506 0.91933 0.94048 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.45 37.16 0.35 -3.04 16 2 C 0.17 4.10 5.40 -4.05 -0.02 4.08 16 3 N -0.60 -14.67 2.46 -173.24 -0.43 -15.10 16 4 C -0.25 -6.68 9.67 -15.06 -0.15 -6.82 16 5 H 0.07 2.00 7.99 -52.49 -0.42 1.58 16 6 C 0.00 0.01 4.91 -17.43 -0.09 -0.07 16 7 N -0.89 -24.95 8.36 55.49 0.46 -24.49 16 8 Si 0.88 21.64 29.65 -169.99 -5.04 16.60 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.30 -7.35 7.11 56.52 0.40 -6.94 16 12 C 0.16 3.30 4.81 -4.04 -0.02 3.28 16 13 C -0.11 -2.00 3.27 -89.24 -0.29 -2.29 16 14 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 15 C -0.12 -1.77 6.65 -25.35 -0.17 -1.94 16 16 C 0.03 0.46 6.49 -2.18 -0.01 0.44 16 17 N -0.52 -8.10 5.66 -238.23 -1.35 -9.45 16 18 C 0.02 0.20 9.53 60.07 0.57 0.77 16 19 C 0.05 0.87 5.22 -2.18 -0.01 0.86 16 20 H 0.00 0.04 8.14 -51.92 -0.42 -0.38 16 21 H 0.09 2.49 6.31 -51.93 -0.33 2.16 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.01 0.12 6.29 -51.93 -0.33 -0.21 16 24 H 0.08 2.08 6.05 -51.93 -0.31 1.76 16 25 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 26 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 27 H 0.03 0.68 7.85 -51.93 -0.41 0.28 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.89 7.71 -51.93 -0.40 0.49 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.04 0.50 7.97 -51.93 -0.41 0.09 16 32 H 0.02 0.32 7.97 -51.93 -0.41 -0.10 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.75 6.28 -51.93 -0.33 0.42 16 36 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 278.79 15.07 4.20 4.20 Total: -1.00 -27.89 278.79 -8.27 -36.16 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -6.29 Total: -3.18 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 0.17 Total: -4.74 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -1.31 Total: -49.04 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.04 Total: 16.60 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.89 -8.27 -36.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687801298.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.225 kcal (2) G-P(sol) polarization free energy of solvation -27.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds