Wall clock time and date at job start Mon Mar 30 2020 02:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47525 * 2 1 4 4 C 1.36935 * 120.00308 * 273.30325 * 3 2 1 5 5 H 1.07998 * 120.00291 * 179.10325 * 4 3 2 6 6 C 1.38806 * 119.99826 * 359.09832 * 4 3 2 7 7 N 1.31625 * 119.99988 * 30.43165 * 6 4 3 8 8 Si 1.86798 * 120.00463 * 210.42923 * 6 4 3 9 9 H 1.48499 * 109.46808 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47248 * 120.00081 * 8 6 4 11 11 H 1.48500 * 109.47523 * 240.00335 * 8 6 4 12 12 C 1.46507 * 119.99850 * 93.30136 * 3 2 1 13 13 C 1.52998 * 109.47157 * 94.11162 * 12 3 2 14 14 H 1.09004 * 110.28907 * 51.94438 * 13 12 3 15 15 C 1.54259 * 110.32372 * 174.07080 * 13 12 3 16 16 C 1.54380 * 105.06154 * 118.89341 * 15 13 12 17 17 N 1.48570 * 104.59238 * 23.85436 * 16 15 13 18 18 C 1.46901 * 110.99934 * 200.95877 * 17 16 15 19 19 C 1.48562 * 104.21996 * 320.51679 * 17 16 15 20 20 H 1.09007 * 109.46951 * 291.72262 * 1 2 3 21 21 H 1.08998 * 109.46845 * 51.71670 * 1 2 3 22 22 H 1.08995 * 109.47744 * 171.72043 * 1 2 3 23 23 H 1.09003 * 109.46766 * 120.00550 * 2 1 3 24 24 H 1.08999 * 109.47065 * 239.99583 * 2 1 3 25 25 H 0.96995 * 120.00318 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.46649 * 214.11095 * 12 3 2 27 27 H 1.08999 * 109.47140 * 334.10552 * 12 3 2 28 28 H 1.08995 * 110.32878 * 237.79221 * 15 13 12 29 29 H 1.08999 * 110.32602 * 0.02562 * 15 13 12 30 30 H 1.08997 * 110.41591 * 142.63040 * 16 15 13 31 31 H 1.09000 * 110.41581 * 265.07891 * 16 15 13 32 32 H 1.08996 * 109.46761 * 60.12805 * 18 17 16 33 33 H 1.08998 * 109.46664 * 180.12224 * 18 17 16 34 34 H 1.09000 * 109.46860 * 300.12443 * 18 17 16 35 35 H 1.09000 * 110.41017 * 280.70434 * 19 17 16 36 36 H 1.08991 * 110.40869 * 158.26015 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1823 2.0495 -1.1839 5 1 2.5285 3.0724 -1.1831 6 6 1.9034 1.4121 -2.3850 7 7 0.9752 0.4802 -2.4356 8 14 2.8454 1.8767 -3.9297 9 1 3.8279 2.9429 -3.6084 10 1 3.5618 0.6846 -4.4501 11 1 1.8958 2.3717 -4.9586 12 6 2.3315 2.0474 1.2667 13 6 3.8217 1.8858 1.5732 14 1 4.4198 2.2010 0.7181 15 6 4.2032 2.7036 2.8243 16 6 4.7176 1.6632 3.8422 17 7 5.1631 0.5151 3.0112 18 6 5.2126 -0.7207 3.8039 19 6 4.1378 0.4200 1.9403 20 1 -0.3633 0.3804 0.9548 21 1 -0.3633 0.6367 -0.8067 22 1 -0.3634 -1.0169 -0.1480 23 1 1.8933 -0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 0.7801 0.0351 -3.2750 26 1 2.0893 3.1073 1.1892 27 1 1.7449 1.5983 2.0681 28 1 4.9896 3.4189 2.5838 29 1 3.3286 3.2198 3.2203 30 1 5.5547 2.0687 4.4103 31 1 3.9143 1.3579 4.5128 32 1 4.2199 -0.9404 4.1966 33 1 5.5438 -1.5447 3.1718 34 1 5.9109 -0.5939 4.6312 35 1 3.2438 -0.0797 2.3133 36 1 4.5385 -0.1103 1.0765 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687801298.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:47 Heat of formation + Delta-G solvation = 14.110280 kcal Electronic energy + Delta-G solvation = -15029.837891 eV Core-core repulsion = 12742.136833 eV Total energy + Delta-G solvation = -2287.701058 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.06261 -37.65082 -34.17094 -32.67334 -31.09614 -29.67909 -27.51576 -25.99247 -24.56735 -22.25090 -21.93717 -20.82567 -18.48953 -17.25800 -16.63843 -16.18553 -15.66346 -15.36270 -15.12068 -14.66467 -14.16603 -13.84254 -13.69602 -13.15728 -13.06120 -12.74427 -12.73261 -12.37655 -12.31939 -12.25696 -12.10160 -11.93316 -11.64029 -11.49977 -11.26043 -11.18753 -10.24781 -9.43269 -8.82234 -7.80967 -5.02539 1.45846 1.52095 1.59661 2.56541 3.16126 3.26878 3.65327 3.81830 4.00491 4.16171 4.35475 4.51715 4.57759 4.63951 4.68792 4.71511 4.83223 4.90132 4.98811 5.00852 5.05250 5.06640 5.19750 5.22878 5.31529 5.38267 5.54311 5.67895 5.81170 5.92781 6.14616 6.19768 6.35382 7.25350 7.98535 8.38378 9.21148 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034829 B = 0.009058 C = 0.008374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.727617 B = 3090.458658 C = 3342.869941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.176 3.824 3 N -0.614 5.614 4 C -0.253 4.253 5 H 0.072 0.928 6 C -0.046 4.046 7 N -0.909 5.909 8 Si 0.937 3.063 9 H -0.275 1.275 10 H -0.296 1.296 11 H -0.298 1.298 12 C 0.162 3.838 13 C -0.105 4.105 14 H 0.052 0.948 15 C -0.114 4.114 16 C 0.036 3.964 17 N -0.535 5.535 18 C 0.014 3.986 19 C 0.057 3.943 20 H 0.018 0.982 21 H 0.058 0.942 22 H 0.030 0.970 23 H 0.027 0.973 24 H 0.045 0.955 25 H 0.244 0.756 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.028 0.972 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.037 0.963 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.591 0.238 12.355 13.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.050 3.950 3 N -0.336 5.336 4 C -0.383 4.383 5 H 0.090 0.910 6 C -0.241 4.241 7 N -0.556 5.556 8 Si 0.767 3.233 9 H -0.200 1.200 10 H -0.224 1.224 11 H -0.226 1.226 12 C 0.036 3.964 13 C -0.127 4.127 14 H 0.071 0.929 15 C -0.153 4.153 16 C -0.092 4.092 17 N -0.260 5.260 18 C -0.134 4.134 19 C -0.071 4.071 20 H 0.037 0.963 21 H 0.077 0.923 22 H 0.049 0.951 23 H 0.045 0.955 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.055 0.945 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.080 0.221 12.031 13.482 hybrid contribution -0.589 -0.171 -0.995 1.169 sum 5.491 0.050 11.036 12.327 Atomic orbital electron populations 1.22112 0.98888 0.99391 0.98641 1.20656 0.92687 0.84605 0.97012 1.44381 1.76104 1.11220 1.01877 1.19425 1.37213 0.97013 0.84620 0.91047 1.25216 0.99473 0.99978 0.99442 1.70456 1.29232 1.30807 1.25127 0.85649 0.79452 0.77003 0.81169 1.19987 1.22356 1.22584 1.20925 0.92678 0.95910 0.86880 1.22420 0.98403 0.94395 0.97508 0.92929 1.22320 1.01209 0.97566 0.94178 1.23147 0.99453 0.91387 0.95175 1.65368 1.44439 1.05163 1.10980 1.22527 1.00698 0.92084 0.98101 1.22914 0.92647 0.97164 0.94334 0.96324 0.92305 0.95092 0.95487 0.93669 0.94592 0.93999 0.93453 0.90929 0.90219 0.88857 0.93335 0.95295 0.91654 0.89725 0.94467 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.15 9.45 71.98 0.68 -5.47 16 2 C 0.18 8.45 5.40 86.38 0.47 8.92 16 3 N -0.61 -29.91 2.46 -702.01 -1.73 -31.64 16 4 C -0.25 -13.74 9.67 84.03 0.81 -12.93 16 5 H 0.07 3.84 7.99 -2.91 -0.02 3.82 16 6 C -0.05 -2.55 4.91 84.86 0.42 -2.13 16 7 N -0.91 -51.89 8.36 21.65 0.18 -51.71 16 8 Si 0.94 45.22 29.65 68.60 2.03 47.25 16 9 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 10 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 11 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 12 C 0.16 6.42 4.81 86.38 0.42 6.83 16 13 C -0.11 -3.70 3.27 -9.90 -0.03 -3.74 16 14 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 15 C -0.11 -3.05 6.65 31.49 0.21 -2.84 16 16 C 0.04 0.87 6.49 86.45 0.56 1.43 16 17 N -0.54 -15.36 5.66 -907.62 -5.14 -20.50 16 18 C 0.01 0.33 9.53 127.69 1.22 1.55 16 19 C 0.06 1.95 5.22 86.45 0.45 2.40 16 20 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 21 H 0.06 3.19 6.31 -2.39 -0.02 3.17 16 22 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.03 1.17 6.29 -2.39 -0.02 1.15 16 24 H 0.04 2.47 6.05 -2.39 -0.01 2.46 16 25 H 0.24 13.69 8.31 -92.71 -0.77 12.92 16 26 H 0.04 1.65 8.07 -2.39 -0.02 1.63 16 27 H 0.05 1.75 7.85 -2.39 -0.02 1.73 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.08 1.92 7.71 -2.39 -0.02 1.90 16 30 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.09 7.97 -2.39 -0.02 1.07 16 32 H 0.03 0.65 7.97 -2.39 -0.02 0.63 16 33 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.04 1.29 6.28 -2.39 -0.01 1.27 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -59.06 278.79 1.57 -57.50 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: 1.02 Total: 5.08 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 5.20 Total: -5.98 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -6.68 Total: -103.85 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -59.06 1.57 -57.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687801298.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.605 kcal (2) G-P(sol) polarization free energy of solvation -59.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds