Wall clock time and date at job start Mon Mar 30 2020 02:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46499 * 109.47402 * 2 1 4 4 C 1.36938 * 120.00042 * 264.01606 * 3 2 1 5 5 H 1.07994 * 120.00198 * 187.55726 * 4 3 2 6 6 C 1.38817 * 120.00037 * 7.54727 * 4 3 2 7 7 N 1.31624 * 119.99779 * 24.17075 * 6 4 3 8 8 Si 1.86796 * 120.00364 * 204.16678 * 6 4 3 9 9 H 1.48498 * 109.47201 * 89.99945 * 8 6 4 10 10 H 1.48499 * 109.47510 * 210.00432 * 8 6 4 11 11 H 1.48507 * 109.46959 * 330.00493 * 8 6 4 12 12 C 1.46493 * 120.00167 * 84.01523 * 3 2 1 13 13 C 1.52998 * 109.47542 * 85.25818 * 12 3 2 14 14 H 1.08998 * 110.64753 * 307.47664 * 13 12 3 15 15 C 1.54589 * 110.72714 * 184.31777 * 13 12 3 16 16 C 1.53992 * 105.14430 * 219.50983 * 15 13 12 17 17 N 1.47903 * 107.05609 * 358.77372 * 16 15 13 18 18 C 1.46899 * 111.00214 * 145.84239 * 17 16 15 19 19 C 1.48538 * 105.81882 * 25.33221 * 17 16 15 20 20 H 1.09004 * 109.47496 * 293.87618 * 1 2 3 21 21 H 1.09001 * 109.47006 * 53.87110 * 1 2 3 22 22 H 1.08999 * 109.47822 * 173.87022 * 1 2 3 23 23 H 1.09001 * 109.47231 * 239.99800 * 2 1 3 24 24 H 1.09003 * 109.47124 * 120.00197 * 2 1 3 25 25 H 0.96993 * 120.00124 * 179.97438 * 7 6 4 26 26 H 1.09005 * 109.47025 * 325.26338 * 12 3 2 27 27 H 1.08997 * 109.47407 * 205.26229 * 12 3 2 28 28 H 1.09000 * 110.30944 * 338.42943 * 15 13 12 29 29 H 1.09001 * 110.31055 * 100.59214 * 15 13 12 30 30 H 1.08994 * 109.92039 * 118.12905 * 16 15 13 31 31 H 1.09001 * 109.91928 * 239.22909 * 16 15 13 32 32 H 1.09008 * 109.46875 * 60.12855 * 18 17 16 33 33 H 1.08998 * 109.47377 * 180.13020 * 18 17 16 34 34 H 1.08999 * 109.46978 * 300.13108 * 18 17 16 35 35 H 1.09001 * 110.66387 * 202.35642 * 19 17 16 36 36 H 1.08997 * 110.66632 * 79.22897 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3631 1.9855 -1.1794 5 1 2.8366 2.9561 -1.1707 6 6 2.1043 1.3504 -2.3864 7 7 1.1482 0.4492 -2.4640 8 14 3.1129 1.7747 -3.9003 9 1 4.2990 0.8840 -3.9706 10 1 2.2818 1.5893 -5.1169 11 1 3.5600 3.1885 -3.8169 12 6 2.1378 2.1159 1.2617 13 6 3.4870 1.7998 1.9103 14 1 3.6305 0.7225 1.9934 15 6 3.5995 2.4753 3.2962 16 6 5.0531 2.9764 3.3827 17 7 5.7255 2.5756 2.1278 18 6 6.7169 3.5792 1.7180 19 6 4.6476 2.4475 1.1139 20 1 -0.3634 0.4160 0.9397 21 1 -0.3633 0.6059 -0.8300 22 1 -0.3635 -1.0217 -0.1097 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 0.9671 0.0057 -3.3074 26 1 1.3330 1.8174 1.9336 27 1 2.0702 3.1862 1.0668 28 1 2.9058 3.3131 3.3661 29 1 3.4011 1.7519 4.0870 30 1 5.0665 4.0618 3.4809 31 1 5.5529 2.5202 4.2372 32 1 7.4710 3.6846 2.4982 33 1 7.1947 3.2608 0.7915 34 1 6.2208 4.5368 1.5605 35 1 4.9630 1.7984 0.2970 36 1 4.3555 3.4277 0.7369 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687801299.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:49 Heat of formation + Delta-G solvation = 27.804979 kcal Electronic energy + Delta-G solvation = -15005.517742 eV Core-core repulsion = 12718.410531 eV Total energy + Delta-G solvation = -2287.107211 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.66324 -35.85480 -32.57115 -30.82574 -29.54655 -27.98404 -26.16478 -24.30272 -22.77524 -20.84598 -20.35009 -19.14288 -16.69532 -15.69678 -15.00005 -14.75178 -14.07533 -13.60238 -13.46169 -13.24621 -12.64786 -12.25968 -11.94684 -11.65116 -11.43584 -11.20420 -11.08817 -10.90730 -10.71414 -10.59679 -10.39382 -10.22542 -10.03431 -9.75521 -9.56810 -9.29942 -8.27771 -8.12305 -6.79688 -5.69832 -2.99304 3.42697 3.50380 3.51246 4.38870 4.55666 5.08345 5.10547 5.26379 5.43254 5.53663 5.64625 5.71614 5.81954 5.87936 6.00456 6.13773 6.18665 6.28118 6.40520 6.50639 6.58803 6.68039 6.79052 6.94887 7.03686 7.11178 7.22144 7.25768 7.38123 7.73199 7.87124 8.10980 8.44369 9.31333 9.95875 10.41217 11.34560 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028905 B = 0.010646 C = 0.008142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.466017 B = 2629.355663 C = 3437.922182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.165 3.835 3 N -0.598 5.598 4 C -0.241 4.241 5 H 0.071 0.929 6 C -0.005 4.005 7 N -0.898 5.898 8 Si 0.891 3.109 9 H -0.290 1.290 10 H -0.294 1.294 11 H -0.283 1.283 12 C 0.161 3.839 13 C -0.107 4.107 14 H 0.074 0.926 15 C -0.128 4.128 16 C 0.038 3.962 17 N -0.530 5.530 18 C 0.018 3.982 19 C 0.057 3.943 20 H 0.006 0.994 21 H 0.082 0.918 22 H 0.022 0.978 23 H 0.091 0.909 24 H 0.001 0.999 25 H 0.250 0.750 26 H 0.035 0.965 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.024 0.976 35 H 0.086 0.914 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.273 3.568 8.916 10.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.040 3.960 3 N -0.319 5.319 4 C -0.370 4.370 5 H 0.089 0.911 6 C -0.202 4.202 7 N -0.544 5.544 8 Si 0.722 3.278 9 H -0.217 1.217 10 H -0.221 1.221 11 H -0.208 1.208 12 C 0.033 3.967 13 C -0.129 4.129 14 H 0.092 0.908 15 C -0.167 4.167 16 C -0.091 4.091 17 N -0.254 5.254 18 C -0.131 4.131 19 C -0.070 4.070 20 H 0.025 0.975 21 H 0.100 0.900 22 H 0.041 0.959 23 H 0.109 0.891 24 H 0.019 0.981 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.105 0.895 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.504 3.008 8.816 10.819 hybrid contribution 0.122 1.023 -0.938 1.393 sum 5.626 4.030 7.878 10.486 Atomic orbital electron populations 1.22197 0.99569 0.98973 0.99401 1.20831 0.92153 0.84732 0.98326 1.44150 1.75748 1.10687 1.01343 1.19244 1.31754 1.02322 0.83655 0.91083 1.24683 0.98362 0.99995 0.97160 1.70194 1.28667 1.30864 1.24695 0.86431 0.80520 0.77751 0.83097 1.21702 1.22108 1.20848 1.20700 0.92463 0.95472 0.88107 1.22791 0.97647 0.99954 0.92496 0.90752 1.22444 0.95289 1.00217 0.98717 1.22809 0.94722 0.97834 0.93700 1.64779 1.13793 1.43137 1.03721 1.22460 0.96127 0.93342 1.01133 1.23165 0.89826 0.99623 0.94416 0.97483 0.89953 0.95928 0.89070 0.98099 0.93960 0.94661 0.93727 0.91829 0.91703 0.94529 0.91210 0.92088 0.91458 0.95783 0.89520 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.61 37.15 0.36 -2.97 16 2 C 0.16 4.01 5.62 -4.05 -0.02 3.99 16 3 N -0.60 -14.60 2.48 -173.25 -0.43 -15.03 16 4 C -0.24 -6.40 9.17 -15.06 -0.14 -6.54 16 5 H 0.07 1.87 7.94 -52.49 -0.42 1.45 16 6 C -0.01 -0.15 4.94 -17.43 -0.09 -0.23 16 7 N -0.90 -25.19 8.65 55.49 0.48 -24.71 16 8 Si 0.89 21.66 29.62 -169.99 -5.03 16.62 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.16 3.27 5.05 -4.05 -0.02 3.25 16 13 C -0.11 -1.93 3.28 -88.76 -0.29 -2.22 16 14 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 15 C -0.13 -1.87 6.51 -25.38 -0.17 -2.04 16 16 C 0.04 0.53 6.70 -2.75 -0.02 0.51 16 17 N -0.53 -8.54 5.55 -238.71 -1.33 -9.86 16 18 C 0.02 0.25 9.40 60.06 0.56 0.82 16 19 C 0.06 1.04 5.43 -1.89 -0.01 1.03 16 20 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 21 H 0.08 2.18 6.66 -51.93 -0.35 1.84 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.09 2.47 5.75 -51.93 -0.30 2.18 16 24 H 0.00 0.02 8.12 -51.93 -0.42 -0.40 16 25 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.04 0.69 8.11 -51.93 -0.42 0.27 16 27 H 0.04 0.91 7.88 -51.93 -0.41 0.50 16 28 H 0.06 0.88 7.85 -51.93 -0.41 0.47 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.48 7.73 -51.93 -0.40 0.08 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 35 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 36 H 0.04 0.77 7.79 -51.93 -0.40 0.37 16 LS Contribution 282.60 15.07 4.26 4.26 Total: -1.00 -27.64 282.60 -8.34 -35.98 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -6.46 Total: -2.87 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 0.17 Total: -4.40 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -1.27 Total: -49.60 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.64 -8.34 -35.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687801299.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.786 kcal (2) G-P(sol) polarization free energy of solvation -27.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds