Wall clock time and date at job start Mon Mar 30 2020 02:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47439 * 111.00480 * 2 1 4 4 C 1.54323 * 107.23689 * 236.74618 * 3 2 1 5 5 C 1.55146 * 103.01541 * 337.70992 * 4 3 2 6 6 C 1.47845 * 110.99866 * 239.15397 * 2 1 3 7 7 H 1.09004 * 110.37411 * 27.42976 * 6 2 1 8 8 C 1.52994 * 110.37799 * 265.19585 * 6 2 1 9 9 C 1.52997 * 109.47065 * 63.12420 * 8 6 2 10 10 N 1.46903 * 109.47363 * 174.26846 * 9 8 6 11 11 C 1.46901 * 111.00313 * 179.97438 * 10 9 8 12 12 C 1.50692 * 109.47002 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00347 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99741 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99970 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99946 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47163 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47034 * 119.99880 * 16 14 12 19 19 H 1.48501 * 109.47155 * 239.99729 * 16 14 12 20 20 H 1.09005 * 109.47094 * 52.81608 * 1 2 3 21 21 H 1.08998 * 109.47145 * 172.81681 * 1 2 3 22 22 H 1.08997 * 109.47071 * 292.81883 * 1 2 3 23 23 H 1.09009 * 109.88909 * 356.14742 * 3 2 1 24 24 H 1.08997 * 109.89069 * 117.33755 * 3 2 1 25 25 H 1.08998 * 110.70735 * 96.09293 * 4 3 2 26 26 H 1.09000 * 110.70215 * 219.33759 * 4 3 2 27 27 H 1.08999 * 110.99435 * 277.56396 * 5 4 3 28 28 H 1.08994 * 111.02209 * 153.75959 * 5 4 3 29 29 H 1.08996 * 109.47563 * 183.12600 * 8 6 2 30 30 H 1.09006 * 109.47206 * 303.12675 * 8 6 2 31 31 H 1.08994 * 109.47358 * 294.26534 * 9 8 6 32 32 H 1.08997 * 109.47274 * 54.26880 * 9 8 6 33 33 H 1.00902 * 110.99434 * 303.95716 * 10 9 8 34 34 H 1.08999 * 109.46809 * 300.00455 * 11 10 9 35 35 H 1.08999 * 109.46601 * 60.00242 * 11 10 9 36 36 H 0.97003 * 119.99968 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3764 0.0000 4 6 2.9159 1.5136 -1.2326 5 6 3.3048 0.0443 -1.5438 6 6 1.9988 -0.7077 -1.1850 7 1 1.2880 -0.6519 -2.0096 8 6 2.3018 -2.1676 -0.8423 9 6 1.0045 -2.8805 -0.4555 10 7 1.2718 -4.3117 -0.2596 11 6 0.0461 -5.0299 0.1143 12 6 0.3589 -6.4916 0.3055 13 1 1.3675 -6.8510 0.1639 14 6 -0.6425 -7.3700 0.6613 15 7 -1.8705 -6.9322 0.8342 16 14 -0.2546 -9.1818 0.8991 17 1 1.1900 -9.4160 0.6473 18 1 -0.5860 -9.5804 2.2907 19 1 -1.0597 -9.9894 -0.0521 20 1 -0.3633 0.6211 -0.8188 21 1 -0.3633 -1.0196 -0.1285 22 1 -0.3633 0.3985 0.9472 23 1 1.1756 2.0892 -0.0689 24 1 2.5698 1.5539 0.9105 25 1 2.3744 1.9546 -2.0695 26 1 3.8001 2.1032 -0.9905 27 1 4.1302 -0.2834 -0.9119 28 1 3.5499 -0.0803 -2.5985 29 1 2.7427 -2.6604 -1.7088 30 1 3.0011 -2.2072 -0.0071 31 1 0.6172 -2.4535 0.4695 32 1 0.2693 -2.7537 -1.2501 33 1 1.6920 -4.7169 -1.0827 34 1 -0.3475 -4.6175 1.0433 35 1 -0.6960 -4.9180 -0.6762 36 1 -2.5749 -7.5502 1.0849 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693959581.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:12 Heat of formation + Delta-G solvation = -7.005528 kcal Electronic energy + Delta-G solvation = -14183.062832 eV Core-core repulsion = 11894.446124 eV Total energy + Delta-G solvation = -2288.616708 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.25139 -35.47799 -32.78400 -32.09739 -31.10620 -27.55124 -25.79985 -25.07675 -21.97226 -21.40234 -20.78825 -19.77310 -16.44907 -16.29075 -15.51015 -14.86067 -14.47399 -14.05820 -13.70912 -13.30617 -12.99502 -12.80973 -12.60274 -12.07735 -11.84204 -11.48040 -11.28480 -11.17949 -11.10815 -10.90356 -10.74782 -10.51761 -10.36050 -10.19854 -9.76314 -9.09467 -8.43819 -8.26080 -7.19115 -5.98900 -4.00464 3.33988 3.40924 3.46544 4.00214 4.46145 4.55339 4.62992 4.88134 5.12961 5.30662 5.36959 5.39542 5.45116 5.49961 5.63980 5.67653 5.68985 5.82294 5.84405 5.97973 6.06263 6.14264 6.18132 6.22582 6.64976 6.69783 7.06261 7.15597 7.33707 7.49299 7.84810 8.19308 8.48695 8.70480 9.09648 9.64380 11.12396 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.069291 B = 0.005129 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.993706 B = 5457.841468 C = 5741.127635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.526 5.526 3 C 0.041 3.959 4 C -0.143 4.143 5 C -0.125 4.125 6 C 0.072 3.928 7 H 0.051 0.949 8 C -0.099 4.099 9 C 0.061 3.939 10 N -0.692 5.692 11 C 0.194 3.806 12 C -0.512 4.512 13 H 0.063 0.937 14 C 0.054 3.946 15 N -0.899 5.899 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 H 0.022 0.978 21 H 0.080 0.920 22 H 0.066 0.934 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.008 0.992 33 H 0.325 0.675 34 H 0.027 0.973 35 H -0.016 1.016 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.255 15.818 -4.824 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.250 5.250 3 C -0.087 4.087 4 C -0.181 4.181 5 C -0.163 4.163 6 C -0.036 4.036 7 H 0.069 0.931 8 C -0.137 4.137 9 C -0.069 4.069 10 N -0.322 5.322 11 C 0.067 3.933 12 C -0.551 4.551 13 H 0.081 0.919 14 C -0.147 4.147 15 N -0.539 5.539 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.211 1.211 20 H 0.040 0.960 21 H 0.098 0.902 22 H 0.085 0.915 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.026 0.974 33 H 0.141 0.859 34 H 0.045 0.955 35 H 0.002 0.998 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.417 15.575 -3.653 17.633 hybrid contribution -0.856 -0.526 -1.398 1.721 sum 6.561 15.049 -5.050 17.176 Atomic orbital electron populations 1.22727 0.87582 1.02816 1.00452 1.63454 1.07959 1.13196 1.40424 1.22840 0.97759 0.89769 0.98295 1.22779 0.99832 0.97426 0.98094 1.22748 0.97887 0.94216 1.01429 1.22655 0.95126 0.94985 0.90843 0.93067 1.21514 0.98855 0.91974 1.01355 1.21981 0.94898 0.90690 0.99333 1.60653 1.30942 1.00683 1.39876 1.19539 0.85419 0.93112 0.95240 1.21259 0.95202 0.92350 1.46271 0.91910 1.25001 0.94944 0.99145 0.95572 1.69980 1.00670 1.34969 1.48266 0.86431 0.78435 0.84801 0.77681 1.19636 1.20990 1.21142 0.95983 0.90165 0.91485 0.93044 0.90639 0.91822 0.90913 0.90360 0.91038 0.92227 0.90690 0.90957 0.97383 0.85875 0.95469 0.99843 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 8.75 60.06 0.53 0.69 16 2 N -0.53 -7.00 4.89 -231.60 -1.13 -8.13 16 3 C 0.04 0.44 6.88 -2.84 -0.02 0.42 16 4 C -0.14 -1.33 6.94 -24.90 -0.17 -1.50 16 5 C -0.12 -1.31 6.50 -24.58 -0.16 -1.47 16 6 C 0.07 0.94 2.61 -66.18 -0.17 0.77 16 7 H 0.05 0.67 7.81 -51.93 -0.41 0.27 16 8 C -0.10 -1.50 5.21 -26.74 -0.14 -1.63 16 9 C 0.06 1.14 4.25 -3.82 -0.02 1.13 16 10 N -0.69 -15.65 6.49 -115.06 -0.75 -16.40 16 11 C 0.19 5.30 5.44 -4.98 -0.03 5.28 16 12 C -0.51 -14.99 9.32 -34.44 -0.32 -15.31 16 13 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 14 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 16 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H 0.02 0.26 8.04 -51.93 -0.42 -0.16 16 21 H 0.08 1.17 5.25 -51.93 -0.27 0.90 16 22 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.51 7.53 -51.92 -0.39 0.12 16 24 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.44 6.52 -51.93 -0.34 1.10 16 32 H 0.01 0.15 7.92 -51.93 -0.41 -0.26 16 33 H 0.33 6.97 8.72 -39.29 -0.34 6.63 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H -0.02 -0.47 8.14 -51.93 -0.42 -0.89 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 286.14 15.07 4.31 4.31 Total: -1.00 -30.87 286.14 -8.80 -39.67 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -6.35 Total: 0.36 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -0.60 Total: -10.14 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -1.14 Total: -51.28 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.87 -8.80 -39.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693959581.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.669 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds