Wall clock time and date at job start Mon Mar 30 2020 02:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47440 * 111.00029 * 2 1 4 4 C 1.54318 * 107.23331 * 123.25815 * 3 2 1 5 5 C 1.55134 * 103.01935 * 22.28430 * 4 3 2 6 6 C 1.47844 * 110.99866 * 120.84143 * 2 1 3 7 7 H 1.09000 * 110.37721 * 332.46087 * 6 2 1 8 8 C 1.53002 * 110.37475 * 94.80732 * 6 2 1 9 9 C 1.53000 * 109.46859 * 295.11049 * 8 6 2 10 10 N 1.46907 * 109.46915 * 185.45200 * 9 8 6 11 11 C 1.46896 * 110.99751 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47077 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00026 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99921 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00390 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99736 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46870 * 59.99963 * 16 14 12 18 18 H 1.48503 * 109.47069 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46949 * 299.99929 * 16 14 12 20 20 H 1.08992 * 109.46831 * 54.30310 * 1 2 3 21 21 H 1.09000 * 109.47224 * 174.30477 * 1 2 3 22 22 H 1.08999 * 109.46765 * 294.30785 * 1 2 3 23 23 H 1.09002 * 109.88516 * 242.66128 * 3 2 1 24 24 H 1.09002 * 109.88949 * 3.68682 * 3 2 1 25 25 H 1.09005 * 110.70106 * 140.66850 * 4 3 2 26 26 H 1.08994 * 110.70379 * 263.89270 * 4 3 2 27 27 H 1.08998 * 110.99422 * 82.44308 * 5 4 3 28 28 H 1.09000 * 110.98793 * 206.25533 * 5 4 3 29 29 H 1.08998 * 109.46954 * 55.11360 * 8 6 2 30 30 H 1.09004 * 109.46868 * 175.11311 * 8 6 2 31 31 H 1.08996 * 109.47196 * 305.44989 * 9 8 6 32 32 H 1.09001 * 109.47182 * 65.45084 * 9 8 6 33 33 H 1.00895 * 110.99925 * 56.04984 * 10 9 8 34 34 H 1.09002 * 109.47264 * 299.99571 * 11 10 9 35 35 H 1.08998 * 109.47480 * 59.99866 * 11 10 9 36 36 H 0.96996 * 120.00497 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5136 1.2325 5 6 3.3047 0.0444 1.5438 6 6 1.9988 -0.7076 1.1851 7 1 1.2890 -0.6501 2.0103 8 6 2.3019 -2.1676 0.8424 9 6 0.9988 -2.8917 0.4981 10 7 1.2715 -4.3211 0.2966 11 6 0.0404 -5.0499 -0.0370 12 6 0.3588 -6.5095 -0.2354 13 1 1.3741 -6.8605 -0.1252 14 6 -0.6462 -7.3967 -0.5577 15 7 -1.8826 -6.9692 -0.6924 16 14 -0.2514 -9.2058 -0.8043 17 1 0.3299 -9.7602 0.4446 18 1 -1.4959 -9.9426 -1.1414 19 1 0.7258 -9.3525 -1.9128 20 1 -0.3633 0.5996 -0.8345 21 1 -0.3634 -1.0226 -0.1020 22 1 -0.3633 0.4230 0.9366 23 1 2.5698 1.5539 -0.9105 24 1 1.1754 2.0892 0.0659 25 1 3.8001 2.1034 0.9904 26 1 2.3745 1.9547 2.0693 27 1 4.1303 -0.2833 0.9120 28 1 3.5495 -0.0795 2.5987 29 1 2.9767 -2.2075 -0.0127 30 1 2.7714 -2.6519 1.6986 31 1 0.2882 -2.7691 1.3154 32 1 0.5788 -2.4696 -0.4149 33 1 1.7207 -4.7213 1.1066 34 1 -0.6772 -4.9423 0.7763 35 1 -0.3858 -4.6427 -0.9539 36 1 -2.5897 -7.5934 -0.9188 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693959582.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:14 Heat of formation + Delta-G solvation = -6.846028 kcal Electronic energy + Delta-G solvation = -14177.650991 eV Core-core repulsion = 11889.041199 eV Total energy + Delta-G solvation = -2288.609792 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.24615 -35.47629 -32.77954 -32.09937 -31.10252 -27.55412 -25.80360 -25.07026 -21.96596 -21.39711 -20.79491 -19.77704 -16.46799 -16.27899 -15.49961 -14.85170 -14.48091 -14.03987 -13.73297 -13.32306 -12.99153 -12.80219 -12.60951 -12.07369 -11.81862 -11.50687 -11.27461 -11.18041 -11.11379 -10.90856 -10.72226 -10.55082 -10.36920 -10.17004 -9.75252 -9.11827 -8.42724 -8.26370 -7.19106 -5.98310 -4.00107 3.36992 3.40393 3.43950 4.00030 4.46315 4.55574 4.62614 4.87821 5.13228 5.31044 5.37268 5.40797 5.42900 5.51189 5.63565 5.66537 5.68682 5.81210 5.83768 5.98548 6.06011 6.14832 6.18057 6.23273 6.65656 6.70805 7.05920 7.15585 7.33783 7.49507 7.84497 8.19692 8.48884 8.70557 9.09387 9.64586 11.12892 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.069332 B = 0.005118 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.754645 B = 5469.753383 C = 5750.217509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.526 5.526 3 C 0.041 3.959 4 C -0.143 4.143 5 C -0.125 4.125 6 C 0.073 3.927 7 H 0.052 0.948 8 C -0.099 4.099 9 C 0.060 3.940 10 N -0.691 5.691 11 C 0.194 3.806 12 C -0.514 4.514 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.900 3.100 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 H 0.064 0.936 21 H 0.081 0.919 22 H 0.022 0.978 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.008 0.992 32 H 0.072 0.928 33 H 0.325 0.675 34 H -0.016 1.016 35 H 0.027 0.973 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.265 15.905 4.516 18.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.250 5.250 3 C -0.087 4.087 4 C -0.181 4.181 5 C -0.163 4.163 6 C -0.036 4.036 7 H 0.070 0.930 8 C -0.137 4.137 9 C -0.069 4.069 10 N -0.322 5.322 11 C 0.068 3.932 12 C -0.552 4.552 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.727 3.273 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.201 1.201 20 H 0.083 0.917 21 H 0.099 0.901 22 H 0.041 0.959 23 H 0.093 0.907 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.026 0.974 32 H 0.090 0.910 33 H 0.141 0.859 34 H 0.002 0.998 35 H 0.045 0.955 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.393 15.661 3.341 17.638 hybrid contribution -0.798 -0.532 1.427 1.719 sum 6.595 15.129 4.768 17.179 Atomic orbital electron populations 1.22730 0.87573 1.03455 0.99749 1.63466 1.07962 1.13157 1.40459 1.22829 0.97735 0.89827 0.98296 1.22772 0.99832 0.97426 0.98094 1.22750 0.97905 0.94212 1.01426 1.22675 0.95156 0.94979 0.90762 0.93039 1.21513 0.98749 0.91931 1.01500 1.21994 0.95016 0.90684 0.99254 1.60654 1.29161 1.00670 1.41665 1.19530 0.85449 0.92951 0.95315 1.21182 0.94518 0.92341 1.47193 0.92023 1.24994 0.94931 0.99138 0.95536 1.69955 1.00084 1.35076 1.48783 0.86540 0.77490 0.84571 0.78671 1.20292 1.21363 1.20133 0.91680 0.90064 0.95932 0.90666 0.93058 0.90916 0.91821 0.90364 0.91037 0.90652 0.92224 0.97370 0.90981 0.85872 0.99849 0.95488 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 8.83 60.07 0.53 0.70 16 2 N -0.53 -6.99 4.93 -231.60 -1.14 -8.13 16 3 C 0.04 0.44 6.89 -2.84 -0.02 0.42 16 4 C -0.14 -1.33 6.94 -24.91 -0.17 -1.50 16 5 C -0.12 -1.31 6.49 -24.60 -0.16 -1.47 16 6 C 0.07 0.95 2.59 -66.19 -0.17 0.77 16 7 H 0.05 0.68 7.70 -51.93 -0.40 0.28 16 8 C -0.10 -1.50 5.20 -26.73 -0.14 -1.64 16 9 C 0.06 1.13 4.49 -3.82 -0.02 1.12 16 10 N -0.69 -15.66 6.49 -115.05 -0.75 -16.41 16 11 C 0.19 5.32 5.44 -4.98 -0.03 5.30 16 12 C -0.51 -15.04 9.32 -34.44 -0.32 -15.36 16 13 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.49 13.29 55.43 0.74 -26.76 16 16 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H 0.06 0.76 8.12 -51.93 -0.42 0.33 16 21 H 0.08 1.20 5.38 -51.93 -0.28 0.92 16 22 H 0.02 0.27 7.97 -51.93 -0.41 -0.15 16 23 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.50 7.58 -51.93 -0.39 0.11 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.07 1.43 6.19 -51.93 -0.32 1.11 16 33 H 0.33 6.98 8.72 -39.29 -0.34 6.63 16 34 H -0.02 -0.47 8.14 -51.93 -0.42 -0.89 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 286.34 15.07 4.32 4.32 Total: -1.00 -30.83 286.34 -8.79 -39.63 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.34 Total: 0.41 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -0.59 Total: -10.14 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -1.15 Total: -51.30 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.83 -8.79 -39.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693959582.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.780 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds