Wall clock time and date at job start Mon Mar 30 2020 02:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47440 * 111.00029 * 2 1 4 4 C 1.54318 * 107.23331 * 123.25815 * 3 2 1 5 5 C 1.55134 * 103.01935 * 22.28430 * 4 3 2 6 6 C 1.47844 * 110.99866 * 120.84143 * 2 1 3 7 7 H 1.09000 * 110.37721 * 332.46087 * 6 2 1 8 8 C 1.53002 * 110.37475 * 94.80732 * 6 2 1 9 9 C 1.53000 * 109.46859 * 295.11049 * 8 6 2 10 10 N 1.46907 * 109.46915 * 185.45200 * 9 8 6 11 11 C 1.46896 * 110.99751 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47077 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00026 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99921 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00390 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99736 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46870 * 59.99963 * 16 14 12 18 18 H 1.48503 * 109.47069 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46949 * 299.99929 * 16 14 12 20 20 H 1.08992 * 109.46831 * 54.30310 * 1 2 3 21 21 H 1.09000 * 109.47224 * 174.30477 * 1 2 3 22 22 H 1.08999 * 109.46765 * 294.30785 * 1 2 3 23 23 H 1.09002 * 109.88516 * 242.66128 * 3 2 1 24 24 H 1.09002 * 109.88949 * 3.68682 * 3 2 1 25 25 H 1.09005 * 110.70106 * 140.66850 * 4 3 2 26 26 H 1.08994 * 110.70379 * 263.89270 * 4 3 2 27 27 H 1.08998 * 110.99422 * 82.44308 * 5 4 3 28 28 H 1.09000 * 110.98793 * 206.25533 * 5 4 3 29 29 H 1.08998 * 109.46954 * 55.11360 * 8 6 2 30 30 H 1.09004 * 109.46868 * 175.11311 * 8 6 2 31 31 H 1.08996 * 109.47196 * 305.44989 * 9 8 6 32 32 H 1.09001 * 109.47182 * 65.45084 * 9 8 6 33 33 H 1.00895 * 110.99925 * 56.04984 * 10 9 8 34 34 H 1.09002 * 109.47264 * 299.99571 * 11 10 9 35 35 H 1.08998 * 109.47480 * 59.99866 * 11 10 9 36 36 H 0.96996 * 120.00497 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5136 1.2325 5 6 3.3047 0.0444 1.5438 6 6 1.9988 -0.7076 1.1851 7 1 1.2890 -0.6501 2.0103 8 6 2.3019 -2.1676 0.8424 9 6 0.9988 -2.8917 0.4981 10 7 1.2715 -4.3211 0.2966 11 6 0.0404 -5.0499 -0.0370 12 6 0.3588 -6.5095 -0.2354 13 1 1.3741 -6.8605 -0.1252 14 6 -0.6462 -7.3967 -0.5577 15 7 -1.8826 -6.9692 -0.6924 16 14 -0.2514 -9.2058 -0.8043 17 1 0.3299 -9.7602 0.4446 18 1 -1.4959 -9.9426 -1.1414 19 1 0.7258 -9.3525 -1.9128 20 1 -0.3633 0.5996 -0.8345 21 1 -0.3634 -1.0226 -0.1020 22 1 -0.3633 0.4230 0.9366 23 1 2.5698 1.5539 -0.9105 24 1 1.1754 2.0892 0.0659 25 1 3.8001 2.1034 0.9904 26 1 2.3745 1.9547 2.0693 27 1 4.1303 -0.2833 0.9120 28 1 3.5495 -0.0795 2.5987 29 1 2.9767 -2.2075 -0.0127 30 1 2.7714 -2.6519 1.6986 31 1 0.2882 -2.7691 1.3154 32 1 0.5788 -2.4696 -0.4149 33 1 1.7207 -4.7213 1.1066 34 1 -0.6772 -4.9423 0.7763 35 1 -0.3858 -4.6427 -0.9539 36 1 -2.5897 -7.5934 -0.9188 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693959582.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:14 Heat of formation + Delta-G solvation = -29.073538 kcal Electronic energy + Delta-G solvation = -14178.614848 eV Core-core repulsion = 11889.041199 eV Total energy + Delta-G solvation = -2289.573649 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.22780 -37.25759 -34.80970 -33.01652 -32.62553 -29.21746 -27.08263 -26.45604 -23.80927 -22.87872 -21.85175 -20.84737 -18.54600 -17.47482 -16.71983 -16.55603 -16.17415 -15.20586 -15.05048 -14.69235 -14.55794 -14.06072 -13.84298 -13.57547 -13.43558 -12.93744 -12.74079 -12.70449 -12.40470 -12.19620 -12.06602 -11.99170 -11.69581 -11.56133 -11.40796 -11.14649 -10.65996 -9.24878 -9.12671 -8.22803 -6.34976 1.41281 1.45808 1.53770 2.40466 3.04386 3.10071 3.48244 3.75689 3.85960 4.09889 4.21045 4.30852 4.43225 4.47133 4.48964 4.56871 4.66271 4.76773 4.92187 4.97595 5.00395 5.01222 5.07482 5.13390 5.23212 5.26931 5.36335 5.41368 5.61530 6.01395 6.10986 6.16296 6.45004 6.72904 6.89359 7.36293 8.88914 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.069332 B = 0.005118 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.754645 B = 5469.753383 C = 5750.217509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.548 5.548 3 C 0.038 3.962 4 C -0.135 4.135 5 C -0.120 4.120 6 C 0.072 3.928 7 H 0.050 0.950 8 C -0.087 4.087 9 C 0.065 3.935 10 N -0.691 5.691 11 C 0.209 3.791 12 C -0.539 4.539 13 H 0.066 0.934 14 C 0.000 4.000 15 N -0.936 5.936 16 Si 0.977 3.023 17 H -0.264 1.264 18 H -0.281 1.281 19 H -0.268 1.268 20 H 0.074 0.926 21 H 0.054 0.946 22 H 0.031 0.969 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.006 0.994 32 H 0.057 0.943 33 H 0.334 0.666 34 H -0.042 1.042 35 H -0.004 1.004 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.708 16.144 5.111 19.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.272 5.272 3 C -0.090 4.090 4 C -0.173 4.173 5 C -0.158 4.158 6 C -0.037 4.037 7 H 0.068 0.932 8 C -0.125 4.125 9 C -0.064 4.064 10 N -0.322 5.322 11 C 0.081 3.919 12 C -0.577 4.577 13 H 0.084 0.916 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.801 3.199 17 H -0.189 1.189 18 H -0.207 1.207 19 H -0.193 1.193 20 H 0.093 0.907 21 H 0.073 0.927 22 H 0.050 0.950 23 H 0.095 0.905 24 H 0.079 0.921 25 H 0.109 0.891 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.024 0.976 32 H 0.076 0.924 33 H 0.151 0.849 34 H -0.024 1.024 35 H 0.014 0.986 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.858 15.926 3.947 18.646 hybrid contribution -1.274 -0.542 1.223 1.847 sum 7.584 15.384 5.170 17.914 Atomic orbital electron populations 1.22647 0.87846 1.02014 1.00676 1.63409 1.07957 1.15049 1.40826 1.22900 0.98361 0.88445 0.99257 1.22756 1.00249 0.96779 0.97530 1.22735 0.96190 0.94557 1.02348 1.22636 0.96720 0.93675 0.90624 0.93246 1.21416 0.96166 0.93386 1.01562 1.22024 0.97226 0.88594 0.98541 1.60550 1.26840 1.02358 1.42431 1.19182 0.86601 0.93155 0.92947 1.21540 0.94960 0.93327 1.47902 0.91602 1.26011 0.94557 1.04555 0.94667 1.70093 1.01240 1.37073 1.49166 0.85327 0.77576 0.77881 0.79148 1.18896 1.20667 1.19279 0.90677 0.92710 0.95005 0.90523 0.92138 0.89078 0.90979 0.90496 0.89480 0.91555 0.90935 0.97626 0.92416 0.84882 1.02432 0.98632 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 8.83 127.69 1.13 1.55 16 2 N -0.55 -14.09 4.93 -886.65 -4.37 -18.45 16 3 C 0.04 0.73 6.89 86.65 0.60 1.33 16 4 C -0.13 -2.11 6.94 31.77 0.22 -1.89 16 5 C -0.12 -2.22 6.49 31.98 0.21 -2.02 16 6 C 0.07 1.78 2.59 45.39 0.12 1.90 16 7 H 0.05 1.25 7.70 -2.39 -0.02 1.23 16 8 C -0.09 -2.58 5.20 30.59 0.16 -2.43 16 9 C 0.07 2.52 4.49 86.30 0.39 2.90 16 10 N -0.69 -31.90 6.49 -517.92 -3.36 -35.26 16 11 C 0.21 11.88 5.44 85.56 0.47 12.34 16 12 C -0.54 -31.96 9.32 25.60 0.24 -31.72 16 13 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 14 C 0.00 0.01 5.46 84.65 0.46 0.47 16 15 N -0.94 -58.08 13.29 21.45 0.28 -57.79 16 16 Si 0.98 45.13 29.54 68.60 2.03 47.15 16 17 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H 0.07 1.72 8.12 -2.39 -0.02 1.70 16 21 H 0.05 1.68 5.38 -2.39 -0.01 1.67 16 22 H 0.03 0.74 7.97 -2.39 -0.02 0.72 16 23 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.06 1.06 7.58 -2.39 -0.02 1.04 16 25 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 1.46 8.06 -2.39 -0.02 1.44 16 28 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.06 2.39 6.19 -2.39 -0.01 2.37 16 33 H 0.33 14.37 8.72 -89.70 -0.78 13.59 16 34 H -0.04 -2.54 8.14 -2.39 -0.02 -2.56 16 35 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 36 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -66.39 286.34 -1.19 -67.57 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.25 Total: 14.34 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 3.98 Total: -17.55 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -7.45 Total: -111.51 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -66.39 -1.19 -67.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693959582.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.500 kcal (2) G-P(sol) polarization free energy of solvation -66.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds