Wall clock time and date at job start Mon Mar 30 2020 02:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46894 * 109.47034 * 2 1 4 4 C 1.46906 * 111.00184 * 195.76401 * 3 2 1 5 5 H 1.08995 * 109.47276 * 186.04481 * 4 3 2 6 6 C 1.53001 * 109.46878 * 306.05233 * 4 3 2 7 7 C 1.52998 * 109.46767 * 66.04859 * 4 3 2 8 8 C 1.50706 * 109.47257 * 65.00137 * 7 4 3 9 9 H 1.08004 * 119.99579 * 0.02562 * 8 7 4 10 10 C 1.37876 * 120.00041 * 179.97438 * 8 7 4 11 11 N 1.31511 * 120.00128 * 359.72402 * 10 8 7 12 12 Si 1.86796 * 119.99766 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47331 * 179.72122 * 12 10 8 14 14 H 1.48501 * 109.47172 * 299.72368 * 12 10 8 15 15 H 1.48504 * 109.47373 * 59.72117 * 12 10 8 16 16 C 1.46902 * 110.99834 * 71.81311 * 3 2 1 17 17 C 1.53931 * 113.73560 * 272.73753 * 16 3 2 18 18 N 1.48189 * 86.10435 * 221.95538 * 17 16 3 19 19 C 1.47958 * 90.79613 * 24.60093 * 18 17 16 20 20 H 1.09001 * 109.47276 * 173.75313 * 1 2 3 21 21 H 1.08992 * 109.47332 * 293.75542 * 1 2 3 22 22 H 1.09008 * 109.46809 * 53.75377 * 1 2 3 23 23 H 1.09001 * 109.47202 * 240.00168 * 2 1 3 24 24 H 1.08997 * 109.47046 * 120.00707 * 2 1 3 25 25 H 1.08998 * 109.46989 * 60.00007 * 6 4 3 26 26 H 1.09002 * 109.46462 * 179.97438 * 6 4 3 27 27 H 1.08999 * 109.46974 * 299.99267 * 6 4 3 28 28 H 1.08998 * 109.47356 * 305.00575 * 7 4 3 29 29 H 1.08997 * 109.47367 * 185.00124 * 7 4 3 30 30 H 0.97002 * 120.00102 * 0.27321 * 11 10 8 31 31 H 1.09002 * 112.93622 * 44.30734 * 16 3 2 32 32 H 1.08998 * 113.76044 * 336.23945 * 17 16 3 33 33 H 1.09001 * 113.75642 * 107.60258 * 17 16 3 34 34 H 1.00900 * 111.07164 * 137.51955 * 18 17 16 35 35 H 1.08997 * 113.76058 * 221.08308 * 19 18 17 36 36 H 1.08999 * 113.76068 * 89.71750 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4395 1.4414 -0.3726 5 1 3.8041 2.4625 -0.2611 6 6 4.2430 0.5105 0.5378 7 6 3.6029 0.9976 -1.8277 8 6 2.9133 1.9843 -2.7343 9 1 2.4092 2.8424 -2.3146 10 6 2.9267 1.7922 -4.0995 11 7 3.5459 0.7508 -4.6110 12 14 2.0725 3.0157 -5.2233 13 1 2.2372 2.5889 -6.6361 14 1 0.6269 3.0701 -4.8879 15 1 2.6743 4.3608 -5.0392 16 6 1.7915 2.0239 1.3030 17 6 0.4065 2.6824 1.4361 18 7 1.1146 3.8021 2.1000 19 6 2.3717 3.4461 1.4057 20 1 -0.3634 -1.0216 -0.1118 21 1 -0.3633 0.4139 0.9405 22 1 -0.3633 0.6077 -0.8289 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.8784 -0.5106 0.4261 26 1 5.2965 0.5521 0.2610 27 1 4.1266 0.8267 1.5744 28 1 3.1579 0.0113 -1.9589 29 1 4.6630 0.9541 -2.0774 30 1 3.9899 0.1157 -4.0275 31 1 2.0543 1.3811 2.1431 32 1 -0.0449 2.9527 0.4815 33 1 -0.2754 2.1418 2.0925 34 1 0.7649 4.6930 1.7804 35 1 3.2571 3.5145 2.0377 36 1 2.4964 3.9401 0.4421 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695785128.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:12 Heat of formation + Delta-G solvation = 26.846889 kcal Electronic energy + Delta-G solvation = -15168.524868 eV Core-core repulsion = 12881.376111 eV Total energy + Delta-G solvation = -2287.148757 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.67140 -36.63050 -33.22334 -31.55454 -28.89563 -26.96670 -25.78315 -25.48832 -22.97707 -22.04665 -19.86931 -18.45822 -16.65762 -16.46165 -15.71291 -14.98353 -13.88498 -13.75144 -13.62407 -13.20004 -12.87207 -12.69351 -12.25987 -11.86554 -11.77293 -11.40776 -11.21001 -11.02810 -10.91011 -10.79407 -10.52942 -10.21347 -10.06640 -9.89230 -9.39442 -8.80864 -8.47114 -8.22104 -7.58615 -6.22765 -3.88186 3.49231 3.51568 3.69872 4.24906 4.48988 4.63825 4.76146 5.32869 5.49313 5.53515 5.58246 5.63229 5.71085 5.72593 5.85553 5.91911 5.94363 5.94811 6.05943 6.11841 6.23656 6.26739 6.40245 6.50190 6.62790 6.68564 6.85316 7.28228 7.35286 7.45112 7.82219 7.90080 8.37743 8.63908 9.02373 9.80403 11.17437 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027833 B = 0.010171 C = 0.009391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.751228 B = 2752.286669 C = 2980.926873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 N -0.501 5.501 4 C 0.093 3.907 5 H 0.072 0.928 6 C -0.184 4.184 7 C 0.017 3.983 8 C -0.569 4.569 9 H 0.051 0.949 10 C 0.008 3.992 11 N -0.922 5.922 12 Si 1.067 2.933 13 H -0.286 1.286 14 H -0.290 1.290 15 H -0.291 1.291 16 C 0.052 3.948 17 C 0.019 3.981 18 N -0.644 5.644 19 C 0.012 3.988 20 H 0.048 0.952 21 H 0.046 0.954 22 H 0.065 0.935 23 H 0.083 0.917 24 H 0.021 0.979 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.041 0.959 28 H 0.010 0.990 29 H 0.008 0.992 30 H 0.265 0.735 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.317 0.683 35 H 0.079 0.921 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.013 1.642 10.967 11.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 N -0.225 5.225 4 C -0.015 4.015 5 H 0.090 0.910 6 C -0.243 4.243 7 C -0.020 4.020 8 C -0.608 4.608 9 H 0.070 0.930 10 C -0.194 4.194 11 N -0.560 5.560 12 Si 0.896 3.104 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.217 1.217 16 C -0.057 4.057 17 C -0.112 4.112 18 N -0.268 5.268 19 C -0.118 4.118 20 H 0.067 0.933 21 H 0.065 0.935 22 H 0.084 0.916 23 H 0.101 0.899 24 H 0.039 0.961 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.028 0.972 29 H 0.026 0.974 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.129 0.871 35 H 0.097 0.903 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.522 2.043 9.852 11.031 hybrid contribution 0.704 -0.575 1.304 1.589 sum -3.818 1.468 11.155 11.882 Atomic orbital electron populations 1.21796 0.95816 1.00816 1.01812 1.22061 0.95387 0.89697 1.00427 1.62403 1.18607 1.16696 1.24767 1.21763 0.84744 0.98266 0.96754 0.90974 1.22554 1.01336 1.00978 0.99390 1.19335 0.96001 0.96930 0.89764 1.21907 1.35989 1.10196 0.92717 0.93022 1.25748 0.97034 0.99604 0.96993 1.70792 1.33627 1.12690 1.38893 0.83573 0.75868 0.74973 0.75999 1.21115 1.21638 1.21745 1.23515 0.95932 0.94489 0.91811 1.23860 0.96403 0.92923 0.97986 1.66871 1.04522 1.05411 1.50027 1.23792 0.94363 0.95505 0.98128 0.93259 0.93474 0.91580 0.89910 0.96057 0.92986 0.92659 0.94026 0.97174 0.97393 0.92441 0.91970 0.90436 0.90347 0.87081 0.90267 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.43 37.16 0.35 -1.88 16 2 C 0.05 0.92 4.43 -3.83 -0.02 0.90 16 3 N -0.50 -9.32 4.14 -220.11 -0.91 -10.23 16 4 C 0.09 1.86 2.09 -67.71 -0.14 1.72 16 5 H 0.07 1.48 6.44 -51.93 -0.33 1.15 16 6 C -0.18 -3.16 8.53 37.16 0.32 -2.84 16 7 C 0.02 0.42 3.70 -27.88 -0.10 0.31 16 8 C -0.57 -15.88 8.84 -34.44 -0.30 -16.19 16 9 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 10 C 0.01 0.24 5.46 -17.82 -0.10 0.14 16 11 N -0.92 -28.36 13.65 55.43 0.76 -27.60 16 12 Si 1.07 25.73 29.90 -169.99 -5.08 20.65 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 C 0.05 0.83 2.53 -69.40 -0.18 0.65 16 17 C 0.02 0.27 6.90 -2.63 -0.02 0.25 16 18 N -0.64 -9.01 8.53 -116.96 -1.00 -10.01 16 19 C 0.01 0.19 7.25 -2.76 -0.02 0.17 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 21 H 0.05 0.65 6.08 -51.93 -0.32 0.33 16 22 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 23 H 0.08 1.67 5.87 -51.93 -0.30 1.36 16 24 H 0.02 0.35 7.00 -51.93 -0.36 -0.02 16 25 H 0.05 0.89 6.69 -51.93 -0.35 0.54 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.04 0.65 7.23 -51.93 -0.38 0.27 16 28 H 0.01 0.27 5.97 -51.93 -0.31 -0.04 16 29 H 0.01 0.21 8.00 -51.93 -0.42 -0.20 16 30 H 0.27 8.12 7.22 -40.82 -0.29 7.83 16 31 H 0.06 0.99 7.54 -51.93 -0.39 0.60 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.08 1.04 7.54 -51.93 -0.39 0.65 16 34 H 0.32 3.97 8.92 -39.29 -0.35 3.62 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.08 1.32 7.64 -51.93 -0.40 0.92 16 LS Contribution 277.30 15.07 4.18 4.18 Total: -1.00 -29.78 277.30 -8.17 -37.95 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.91 Total: 1.83 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -0.21 Total: -16.76 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -1.15 Total: -47.84 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.65 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.78 -8.17 -37.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695785128.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.796 kcal (2) G-P(sol) polarization free energy of solvation -29.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds