Wall clock time and date at job start Mon Mar 30 2020 02:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 111.00214 * 2 1 4 4 C 1.46898 * 111.00103 * 123.95676 * 2 1 3 5 5 C 1.52997 * 109.47210 * 66.04620 * 4 2 1 6 6 C 1.52995 * 109.47123 * 174.77047 * 5 4 2 7 7 H 1.08999 * 109.87250 * 300.95955 * 6 5 4 8 8 C 1.54329 * 109.88385 * 179.78453 * 6 5 4 9 9 C 1.55154 * 102.94496 * 218.38866 * 8 6 5 10 10 C 1.54693 * 101.67732 * 35.33303 * 9 8 6 11 11 N 1.47021 * 109.88709 * 61.97765 * 6 5 4 12 12 C 1.36942 * 125.64302 * 298.32122 * 11 6 5 13 13 H 1.07995 * 120.00126 * 337.13568 * 12 11 6 14 14 C 1.38814 * 119.99413 * 157.41254 * 12 11 6 15 15 N 1.31626 * 119.99439 * 163.14063 * 14 12 11 16 16 Si 1.86798 * 120.00420 * 343.13716 * 14 12 11 17 17 H 1.48503 * 109.47153 * 84.76108 * 16 14 12 18 18 H 1.48503 * 109.47246 * 204.76343 * 16 14 12 19 19 H 1.48498 * 109.47081 * 324.76359 * 16 14 12 20 20 H 1.09001 * 109.46780 * 296.04619 * 1 2 3 21 21 H 1.09004 * 109.46684 * 56.04460 * 1 2 3 22 22 H 1.08994 * 109.47231 * 176.04124 * 1 2 3 23 23 H 1.08997 * 109.47257 * 183.95623 * 3 2 1 24 24 H 1.09000 * 109.47092 * 303.95908 * 3 2 1 25 25 H 1.09005 * 109.46934 * 63.95165 * 3 2 1 26 26 H 1.08998 * 109.46969 * 306.04352 * 4 2 1 27 27 H 1.09002 * 109.47195 * 186.05021 * 4 2 1 28 28 H 1.08999 * 109.47247 * 54.76625 * 5 4 2 29 29 H 1.09007 * 109.46511 * 294.76762 * 5 4 2 30 30 H 1.09000 * 110.71802 * 336.75496 * 8 6 5 31 31 H 1.08997 * 110.72263 * 100.02245 * 8 6 5 32 32 H 1.09000 * 111.00472 * 153.57181 * 9 8 6 33 33 H 1.09003 * 111.00171 * 277.38822 * 9 8 6 34 34 H 1.08994 * 110.39591 * 204.36646 * 10 9 8 35 35 H 1.09000 * 110.23451 * 82.11546 * 10 9 8 36 36 H 0.96999 * 119.99485 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9702 6 6 2.2892 -3.0594 2.0843 7 1 3.3713 -2.9346 2.0458 8 6 1.9237 -4.5505 1.9277 9 6 1.7281 -5.0164 3.3947 10 6 1.1045 -3.7576 4.0424 11 7 1.7815 -2.6207 3.3925 12 6 1.9199 -1.3654 3.9220 13 1 2.7162 -0.7203 3.5813 14 6 1.0400 -0.9243 4.9010 15 7 1.3492 0.1186 5.6421 16 14 -0.5827 -1.8107 5.1664 17 1 -0.3718 -2.9688 6.0718 18 1 -1.5627 -0.8770 5.7772 19 1 -1.1036 -2.2911 3.8614 20 1 -0.3633 0.4513 0.9233 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3633 -1.0251 -0.0709 23 1 3.0828 1.3432 -0.0709 24 1 1.5898 1.9164 -0.8524 25 1 1.7044 1.8724 0.9233 26 1 1.5611 -0.3873 2.0627 27 1 3.0797 -0.6611 1.1756 28 1 1.9860 -2.5968 0.0023 29 1 0.5490 -2.3584 1.0254 30 1 0.9997 -4.6636 1.3607 31 1 2.7376 -5.0995 1.4540 32 1 1.0451 -5.8642 3.4476 33 1 2.6843 -5.2581 3.8586 34 1 1.2943 -3.7489 5.1156 35 1 0.0329 -3.7239 3.8456 36 1 0.7346 0.4265 6.3264 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701463511.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:06 Heat of formation + Delta-G solvation = 26.791033 kcal Electronic energy + Delta-G solvation = -15244.621189 eV Core-core repulsion = 12957.470010 eV Total energy + Delta-G solvation = -2287.151179 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.31869 -36.54605 -32.59799 -31.41463 -29.89622 -27.19793 -26.84291 -24.48915 -23.11324 -21.20021 -19.98767 -19.11490 -16.85976 -15.71736 -15.15885 -14.71943 -14.45636 -14.22259 -13.36468 -13.06169 -12.83041 -12.63021 -12.02365 -11.78248 -11.46668 -11.40940 -11.24514 -11.16358 -11.07043 -10.73918 -10.43965 -10.16688 -9.98634 -9.80096 -9.74597 -9.34955 -8.67121 -7.74715 -6.93305 -5.93348 -3.25928 3.34591 3.46936 3.49040 4.52884 4.54995 5.02436 5.25647 5.39960 5.44161 5.58915 5.61686 5.70859 5.87147 5.94391 6.01223 6.10762 6.14702 6.21085 6.22393 6.28513 6.34351 6.37583 6.51808 6.59762 6.64057 6.78557 6.84248 7.08073 7.10354 7.57713 7.65298 7.81577 8.33213 8.85789 9.70145 10.23904 11.22792 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.022631 B = 0.014447 C = 0.010500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.936833 B = 1937.678818 C = 2666.022193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.555 5.555 3 C 0.027 3.973 4 C 0.043 3.957 5 C -0.113 4.113 6 C 0.159 3.841 7 H 0.042 0.958 8 C -0.125 4.125 9 C -0.132 4.132 10 C 0.106 3.894 11 N -0.605 5.605 12 C -0.230 4.230 13 H 0.093 0.907 14 C 0.019 3.981 15 N -0.915 5.915 16 Si 0.889 3.111 17 H -0.287 1.287 18 H -0.306 1.306 19 H -0.274 1.274 20 H 0.026 0.974 21 H 0.055 0.945 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.027 0.973 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.025 0.975 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.591 -4.982 -8.913 10.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.279 5.279 3 C -0.122 4.122 4 C -0.084 4.084 5 C -0.153 4.153 6 C 0.052 3.948 7 H 0.059 0.941 8 C -0.163 4.163 9 C -0.170 4.170 10 C -0.019 4.019 11 N -0.331 5.331 12 C -0.358 4.358 13 H 0.110 0.890 14 C -0.179 4.179 15 N -0.559 5.559 16 Si 0.720 3.280 17 H -0.214 1.214 18 H -0.234 1.234 19 H -0.200 1.200 20 H 0.045 0.955 21 H 0.074 0.926 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.104 0.896 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.462 -4.995 -9.171 10.453 hybrid contribution -1.307 0.045 0.991 1.641 sum -1.769 -4.950 -8.179 9.723 Atomic orbital electron populations 1.22326 0.88408 1.01764 0.99755 1.62122 1.07455 1.13153 1.45143 1.22293 1.00274 0.89643 0.99967 1.22593 0.99379 0.93647 0.92741 1.21950 1.00359 0.95193 0.97806 1.21026 0.96575 0.91238 0.85939 0.94054 1.22588 1.00863 0.96285 0.96610 1.22677 1.00734 0.97478 0.96143 1.21959 0.95369 0.87341 0.97197 1.44859 1.66429 1.07642 1.14200 1.18588 1.10190 0.89206 1.17769 0.88985 1.25076 0.98254 0.96435 0.98159 1.69785 1.36725 1.27213 1.22173 0.86912 0.85433 0.77929 0.77731 1.21365 1.23412 1.20031 0.95514 0.92609 0.91634 0.91900 0.92418 0.95473 0.89607 0.92205 0.92989 0.92886 0.91785 0.91765 0.91995 0.91471 0.92676 0.95726 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.32 60.06 0.56 0.99 16 2 N -0.55 -9.87 5.02 -251.26 -1.26 -11.13 16 3 C 0.03 0.43 9.57 60.07 0.57 1.00 16 4 C 0.04 0.86 3.89 -3.83 -0.01 0.84 16 5 C -0.11 -2.13 4.57 -26.74 -0.12 -2.25 16 6 C 0.16 3.13 3.30 -66.95 -0.22 2.91 16 7 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 8 C -0.13 -2.04 6.48 -24.90 -0.16 -2.20 16 9 C -0.13 -2.25 7.07 -24.70 -0.17 -2.42 16 10 C 0.11 2.32 4.69 -2.65 -0.01 2.31 16 11 N -0.61 -14.32 2.91 -162.71 -0.47 -14.80 16 12 C -0.23 -6.29 7.71 -15.06 -0.12 -6.40 16 13 H 0.09 2.67 7.16 -52.49 -0.38 2.30 16 14 C 0.02 0.54 5.47 -17.43 -0.10 0.45 16 15 N -0.91 -27.97 13.97 55.49 0.78 -27.20 16 16 Si 0.89 22.85 24.26 -169.99 -4.12 18.72 16 17 H -0.29 -7.17 6.62 56.52 0.37 -6.80 16 18 H -0.31 -8.02 7.11 56.52 0.40 -7.62 16 19 H -0.27 -6.94 6.38 56.52 0.36 -6.58 16 20 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 22 H 0.06 1.08 6.59 -51.93 -0.34 0.74 16 23 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 24 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 25 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 2.06 5.21 -51.93 -0.27 1.79 16 27 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.05 1.05 6.81 -51.93 -0.35 0.69 16 30 H 0.06 1.00 7.85 -51.93 -0.41 0.59 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.28 6.78 -51.93 -0.35 0.93 16 35 H 0.03 0.57 5.25 -51.93 -0.27 0.30 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 271.73 15.07 4.09 4.09 Total: -1.00 -29.77 271.73 -6.99 -36.76 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.22 Total: -1.69 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 0.22 Total: -4.77 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.96 Total: -53.12 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.12 Total: 18.72 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.77 -6.99 -36.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701463511.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.553 kcal (2) G-P(sol) polarization free energy of solvation -29.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds