Wall clock time and date at job start Mon Mar 30 2020 02:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 111.00214 * 2 1 4 4 C 1.46898 * 111.00103 * 123.95676 * 2 1 3 5 5 C 1.52997 * 109.47210 * 66.04620 * 4 2 1 6 6 C 1.52995 * 109.47123 * 174.77047 * 5 4 2 7 7 H 1.08999 * 109.87250 * 300.95955 * 6 5 4 8 8 C 1.54329 * 109.88385 * 179.78453 * 6 5 4 9 9 C 1.55154 * 102.94496 * 218.38866 * 8 6 5 10 10 C 1.54693 * 101.67732 * 35.33303 * 9 8 6 11 11 N 1.47021 * 109.88709 * 61.97765 * 6 5 4 12 12 C 1.36942 * 125.64302 * 298.32122 * 11 6 5 13 13 H 1.07995 * 120.00126 * 337.13568 * 12 11 6 14 14 C 1.38814 * 119.99413 * 157.41254 * 12 11 6 15 15 N 1.31626 * 119.99439 * 163.14063 * 14 12 11 16 16 Si 1.86798 * 120.00420 * 343.13716 * 14 12 11 17 17 H 1.48503 * 109.47153 * 84.76108 * 16 14 12 18 18 H 1.48503 * 109.47246 * 204.76343 * 16 14 12 19 19 H 1.48498 * 109.47081 * 324.76359 * 16 14 12 20 20 H 1.09001 * 109.46780 * 296.04619 * 1 2 3 21 21 H 1.09004 * 109.46684 * 56.04460 * 1 2 3 22 22 H 1.08994 * 109.47231 * 176.04124 * 1 2 3 23 23 H 1.08997 * 109.47257 * 183.95623 * 3 2 1 24 24 H 1.09000 * 109.47092 * 303.95908 * 3 2 1 25 25 H 1.09005 * 109.46934 * 63.95165 * 3 2 1 26 26 H 1.08998 * 109.46969 * 306.04352 * 4 2 1 27 27 H 1.09002 * 109.47195 * 186.05021 * 4 2 1 28 28 H 1.08999 * 109.47247 * 54.76625 * 5 4 2 29 29 H 1.09007 * 109.46511 * 294.76762 * 5 4 2 30 30 H 1.09000 * 110.71802 * 336.75496 * 8 6 5 31 31 H 1.08997 * 110.72263 * 100.02245 * 8 6 5 32 32 H 1.09000 * 111.00472 * 153.57181 * 9 8 6 33 33 H 1.09003 * 111.00171 * 277.38822 * 9 8 6 34 34 H 1.08994 * 110.39591 * 204.36646 * 10 9 8 35 35 H 1.09000 * 110.23451 * 82.11546 * 10 9 8 36 36 H 0.96999 * 119.99485 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9702 6 6 2.2892 -3.0594 2.0843 7 1 3.3713 -2.9346 2.0458 8 6 1.9237 -4.5505 1.9277 9 6 1.7281 -5.0164 3.3947 10 6 1.1045 -3.7576 4.0424 11 7 1.7815 -2.6207 3.3925 12 6 1.9199 -1.3654 3.9220 13 1 2.7162 -0.7203 3.5813 14 6 1.0400 -0.9243 4.9010 15 7 1.3492 0.1186 5.6421 16 14 -0.5827 -1.8107 5.1664 17 1 -0.3718 -2.9688 6.0718 18 1 -1.5627 -0.8770 5.7772 19 1 -1.1036 -2.2911 3.8614 20 1 -0.3633 0.4513 0.9233 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3633 -1.0251 -0.0709 23 1 3.0828 1.3432 -0.0709 24 1 1.5898 1.9164 -0.8524 25 1 1.7044 1.8724 0.9233 26 1 1.5611 -0.3873 2.0627 27 1 3.0797 -0.6611 1.1756 28 1 1.9860 -2.5968 0.0023 29 1 0.5490 -2.3584 1.0254 30 1 0.9997 -4.6636 1.3607 31 1 2.7376 -5.0995 1.4540 32 1 1.0451 -5.8642 3.4476 33 1 2.6843 -5.2581 3.8586 34 1 1.2943 -3.7489 5.1156 35 1 0.0329 -3.7239 3.8456 36 1 0.7346 0.4265 6.3264 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701463511.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:06 Heat of formation + Delta-G solvation = 5.644760 kcal Electronic energy + Delta-G solvation = -15245.538161 eV Core-core repulsion = 12957.470010 eV Total energy + Delta-G solvation = -2288.068150 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.93337 -38.02160 -34.63455 -32.93591 -31.76674 -28.58285 -28.34746 -26.35331 -24.71146 -22.79922 -21.45237 -20.78880 -18.85800 -17.37666 -17.03770 -16.21900 -15.91127 -15.70030 -15.10673 -14.92129 -14.51386 -14.21920 -13.63599 -13.24593 -13.10727 -12.95503 -12.84354 -12.71929 -12.57991 -12.43103 -12.15170 -11.79887 -11.65709 -11.51955 -11.29982 -11.16370 -10.74269 -9.30128 -8.89699 -8.14441 -5.41766 1.27231 1.34564 1.42730 2.41144 3.05291 3.16810 3.34809 3.95661 3.96346 4.17919 4.26509 4.29556 4.44792 4.52447 4.55134 4.66602 4.72581 4.74769 4.84884 4.93185 4.94950 4.97195 5.01609 5.13285 5.17602 5.23608 5.36897 5.44000 5.58709 5.77820 6.11800 6.15254 6.17165 6.82861 7.58881 8.18203 9.05958 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.022631 B = 0.014447 C = 0.010500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.936833 B = 1937.678818 C = 2666.022193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.552 5.552 3 C 0.026 3.974 4 C 0.052 3.948 5 C -0.103 4.103 6 C 0.148 3.852 7 H 0.038 0.962 8 C -0.114 4.114 9 C -0.120 4.120 10 C 0.095 3.905 11 N -0.622 5.622 12 C -0.200 4.200 13 H 0.062 0.938 14 C -0.043 4.043 15 N -0.965 5.965 16 Si 0.945 3.055 17 H -0.276 1.276 18 H -0.317 1.317 19 H -0.267 1.267 20 H 0.001 0.999 21 H 0.086 0.914 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.005 0.995 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.020 0.980 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.951 -7.356 -11.142 13.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.276 5.276 3 C -0.123 4.123 4 C -0.075 4.075 5 C -0.142 4.142 6 C 0.042 3.958 7 H 0.056 0.944 8 C -0.152 4.152 9 C -0.158 4.158 10 C -0.030 4.030 11 N -0.348 5.348 12 C -0.329 4.329 13 H 0.080 0.920 14 C -0.236 4.236 15 N -0.614 5.614 16 Si 0.775 3.225 17 H -0.202 1.202 18 H -0.246 1.246 19 H -0.192 1.192 20 H 0.020 0.980 21 H 0.105 0.895 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.024 0.976 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.038 0.962 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.819 -7.418 -11.439 13.658 hybrid contribution -1.091 0.810 1.589 2.091 sum -1.910 -6.608 -9.850 12.015 Atomic orbital electron populations 1.22386 0.87600 1.02352 0.99816 1.62196 1.08168 1.13941 1.43249 1.22388 1.00949 0.88794 1.00137 1.22333 0.98579 0.95033 0.91591 1.21841 0.99694 0.93930 0.98784 1.21307 0.96217 0.94087 0.84165 0.94450 1.22591 1.02792 0.93279 0.96488 1.22651 1.01399 0.95859 0.95887 1.22088 0.95311 0.89120 0.96456 1.45039 1.66434 1.06887 1.16455 1.18457 1.08193 0.90225 1.16006 0.92046 1.25632 1.01283 0.97742 0.98976 1.69913 1.37827 1.29782 1.23833 0.85991 0.81689 0.76900 0.77874 1.20196 1.24580 1.19236 0.97995 0.89535 0.91272 0.91171 0.89438 0.97637 0.94386 0.92943 0.90218 0.93706 0.90441 0.88353 0.88692 0.90775 0.94798 0.96235 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.32 127.69 1.19 2.05 16 2 N -0.55 -18.97 5.02 -948.84 -4.76 -23.73 16 3 C 0.03 0.79 9.57 127.69 1.22 2.01 16 4 C 0.05 2.08 3.89 86.30 0.34 2.42 16 5 C -0.10 -3.67 4.57 30.59 0.14 -3.53 16 6 C 0.15 5.51 3.30 45.34 0.15 5.66 16 7 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 8 C -0.11 -3.17 6.48 31.78 0.21 -2.97 16 9 C -0.12 -3.59 7.07 31.91 0.23 -3.36 16 10 C 0.09 3.97 4.69 86.78 0.41 4.38 16 11 N -0.62 -29.13 2.91 -668.70 -1.94 -31.07 16 12 C -0.20 -11.24 7.71 84.03 0.65 -10.60 16 13 H 0.06 3.77 7.16 -2.91 -0.02 3.75 16 14 C -0.04 -2.56 5.47 84.86 0.46 -2.09 16 15 N -0.97 -61.79 13.97 21.65 0.30 -61.49 16 16 Si 0.94 48.28 24.26 68.60 1.66 49.94 16 17 H -0.28 -13.41 6.62 99.48 0.66 -12.75 16 18 H -0.32 -16.56 7.11 99.48 0.71 -15.86 16 19 H -0.27 -13.09 6.38 99.48 0.63 -12.46 16 20 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 21 H 0.09 2.22 8.12 -2.39 -0.02 2.20 16 22 H 0.07 2.14 6.59 -2.39 -0.02 2.13 16 23 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 24 H 0.09 2.17 8.12 -2.39 -0.02 2.15 16 25 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 26 H 0.04 1.90 5.21 -2.39 -0.01 1.89 16 27 H 0.05 2.13 8.06 -2.39 -0.02 2.11 16 28 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.04 1.67 6.81 -2.38 -0.02 1.66 16 30 H 0.08 2.00 7.85 -2.39 -0.02 1.98 16 31 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 34 H 0.03 1.55 6.78 -2.39 -0.02 1.53 16 35 H 0.02 0.86 5.25 -2.39 -0.01 0.85 16 36 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -66.71 271.73 1.16 -65.56 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 0.90 Total: 6.82 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 4.99 Total: -6.03 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -6.40 Total: -116.29 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 1.66 Total: 49.94 kcal Total: -66.71 1.16 -65.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701463511.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.204 kcal (2) G-P(sol) polarization free energy of solvation -66.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds