Wall clock time and date at job start Mon Mar 30 2020 02:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46895 * 111.00256 * 2 1 4 4 C 1.46893 * 110.99959 * 123.95847 * 2 1 3 5 5 C 1.53783 * 113.61582 * 67.76859 * 4 2 1 6 6 C 1.53780 * 87.07968 * 139.98037 * 5 4 2 7 7 N 1.46908 * 113.61669 * 220.01980 * 6 5 4 8 8 C 1.46896 * 111.00291 * 205.00546 * 7 6 5 9 9 C 1.52993 * 109.47266 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.47112 * 179.97438 * 9 8 7 11 11 H 1.07990 * 120.00117 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99735 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00406 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99745 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47083 * 89.99997 * 14 12 10 16 16 H 1.48500 * 109.46962 * 209.99472 * 14 12 10 17 17 H 1.48496 * 109.47426 * 329.99910 * 14 12 10 18 18 C 1.53776 * 87.08223 * 334.56644 * 6 5 4 19 19 H 1.09004 * 109.46704 * 296.04711 * 1 2 3 20 20 H 1.09003 * 109.47355 * 56.03895 * 1 2 3 21 21 H 1.09000 * 109.47325 * 176.04743 * 1 2 3 22 22 H 1.08994 * 109.47224 * 186.34348 * 3 2 1 23 23 H 1.09004 * 109.47250 * 306.34531 * 3 2 1 24 24 H 1.08997 * 109.47108 * 66.34147 * 3 2 1 25 25 H 1.08998 * 112.91074 * 296.51762 * 4 2 1 26 26 H 1.09001 * 113.61540 * 25.43265 * 5 4 2 27 27 H 1.09001 * 113.61932 * 254.52593 * 5 4 2 28 28 H 1.08998 * 113.61577 * 89.11754 * 6 5 4 29 29 H 1.00894 * 111.00195 * 81.04277 * 7 6 5 30 30 H 1.09001 * 109.46908 * 299.99826 * 8 7 6 31 31 H 1.09006 * 109.47380 * 59.99255 * 8 7 6 32 32 H 1.09001 * 109.47040 * 299.99775 * 9 8 7 33 33 H 1.08997 * 109.47289 * 59.99515 * 9 8 7 34 34 H 0.96997 * 120.00535 * 180.02562 * 13 12 10 35 35 H 1.09005 * 113.60957 * 139.98016 * 18 6 5 36 36 H 1.08996 * 113.61493 * 270.88313 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.7185 -2.2759 1.0444 6 6 3.1387 -2.4904 1.5938 7 7 3.8563 -3.6006 0.9528 8 6 4.8914 -4.1424 1.8432 9 6 5.6148 -5.2942 1.1427 10 6 6.6771 -5.8497 2.0560 11 1 6.8221 -5.4235 3.0376 12 6 7.4647 -6.9013 1.6379 13 7 7.2885 -7.4201 0.4423 14 14 8.7810 -7.5902 2.7702 15 1 8.2015 -8.6780 3.5986 16 1 9.9003 -8.1300 1.9571 17 1 9.2875 -6.5106 3.6549 18 6 3.4884 -1.1118 1.0092 19 1 -0.3633 0.4513 0.9233 20 1 -0.3634 0.5741 -0.8524 21 1 -0.3634 -1.0252 -0.0708 22 1 3.0792 1.3445 -0.1135 23 1 1.5572 1.9289 -0.8278 24 1 1.7408 1.8583 0.9413 25 1 1.7290 -0.3319 2.1011 26 1 1.5868 -2.6335 0.0232 27 1 0.9333 -2.6182 1.7185 28 1 3.1849 -2.5277 2.6822 29 1 4.2524 -3.3135 0.0704 30 1 5.6077 -3.3578 2.0873 31 1 4.4275 -4.5085 2.7592 32 1 4.8982 -6.0786 0.8991 33 1 6.0785 -4.9285 0.2267 34 1 7.8423 -8.1601 0.1482 35 1 4.1320 -0.5142 1.6550 36 1 3.8405 -1.1511 -0.0215 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701489624.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:31 Heat of formation + Delta-G solvation = 15.426868 kcal Electronic energy + Delta-G solvation = -13947.408221 eV Core-core repulsion = 11659.764255 eV Total energy + Delta-G solvation = -2287.643966 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.50327 -36.09606 -33.99933 -32.26424 -28.74733 -27.94413 -25.23054 -25.09309 -23.73050 -21.17305 -20.66527 -19.21591 -16.44147 -15.89318 -15.59197 -14.91920 -14.69722 -14.40197 -14.09922 -13.48757 -12.91339 -12.57514 -12.23050 -12.17635 -11.98678 -11.89967 -11.77549 -11.08067 -11.01310 -10.89778 -10.63139 -10.39299 -10.27312 -9.92271 -9.28453 -9.09764 -8.48373 -8.32289 -7.68901 -5.96687 -3.99230 3.34136 3.40057 3.43258 3.86003 4.46575 4.56309 4.77204 4.88859 5.01300 5.06492 5.20335 5.26012 5.39144 5.40668 5.41763 5.59323 5.72646 5.74775 5.86534 5.96976 6.11348 6.25264 6.33868 6.43453 6.49918 6.89932 7.02494 7.04961 7.57423 7.78813 7.87630 8.02234 8.13688 8.47376 9.08212 9.64368 11.14791 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.081764 B = 0.004559 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.367443 B = 6140.547816 C = 6203.012502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.534 5.534 3 C 0.025 3.975 4 C 0.050 3.950 5 C -0.115 4.115 6 C 0.070 3.930 7 N -0.678 5.678 8 C 0.065 3.935 9 C 0.024 3.976 10 C -0.521 4.521 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.892 3.108 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.275 1.275 18 C -0.154 4.154 19 H 0.021 0.979 20 H 0.064 0.936 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.021 0.979 25 H 0.061 0.939 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.339 0.661 30 H 0.015 0.985 31 H 0.057 0.943 32 H 0.025 0.975 33 H 0.014 0.986 34 H 0.260 0.740 35 H 0.060 0.940 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.293 15.128 0.404 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.258 5.258 3 C -0.124 4.124 4 C -0.059 4.059 5 C -0.154 4.154 6 C -0.042 4.042 7 N -0.308 5.308 8 C -0.063 4.063 9 C -0.014 4.014 10 C -0.560 4.560 11 H 0.072 0.928 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.194 4.194 19 H 0.040 0.960 20 H 0.083 0.917 21 H 0.089 0.911 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.040 0.960 25 H 0.078 0.922 26 H 0.112 0.888 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.158 0.842 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.522 14.271 0.036 18.342 hybrid contribution 1.128 0.770 1.299 1.885 sum -10.394 15.041 1.335 18.332 Atomic orbital electron populations 1.22342 0.87638 1.02422 0.99944 1.62205 1.07668 1.13497 1.42454 1.22337 1.01135 0.88979 0.99902 1.23074 0.96726 0.94600 0.91482 1.23131 0.97219 0.92514 1.02518 1.22813 0.94821 0.88391 0.98202 1.60496 1.31407 1.32053 1.06824 1.22182 0.90933 0.97340 0.95813 1.19080 0.94487 0.92319 0.95481 1.21187 1.17316 1.16234 1.01277 0.92792 1.25004 0.97503 0.96726 0.95134 1.69974 1.40036 1.25119 1.18144 0.86592 0.81444 0.79263 0.80672 1.20644 1.21230 1.19947 1.23757 0.94806 0.98720 1.02104 0.96025 0.91685 0.91082 0.91291 0.91675 0.95999 0.92158 0.88842 0.91983 0.89173 0.84185 0.96687 0.92472 0.95657 0.96802 0.93006 0.92153 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.45 60.07 0.57 0.80 16 2 N -0.53 -6.01 4.96 -242.20 -1.20 -7.22 16 3 C 0.02 0.24 9.46 60.06 0.57 0.81 16 4 C 0.05 0.59 3.17 -66.90 -0.21 0.38 16 5 C -0.12 -1.50 6.85 -25.92 -0.18 -1.68 16 6 C 0.07 1.03 4.18 -66.90 -0.28 0.75 16 7 N -0.68 -12.41 6.62 -105.87 -0.70 -13.11 16 8 C 0.07 1.41 5.47 -3.83 -0.02 1.39 16 9 C 0.02 0.63 5.23 -27.88 -0.15 0.49 16 10 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 11 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.29 13.29 55.43 0.74 -26.55 16 14 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 C -0.15 -2.00 6.86 -25.92 -0.18 -2.18 16 19 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 20 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 21 H 0.07 0.68 7.57 -51.93 -0.39 0.28 16 22 H 0.07 0.67 7.74 -51.93 -0.40 0.27 16 23 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 24 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 1.33 7.87 -51.93 -0.41 0.92 16 29 H 0.34 6.09 8.19 -39.29 -0.32 5.76 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.24 7.82 -51.93 -0.41 0.84 16 LS Contribution 293.80 15.07 4.43 4.43 Total: -1.00 -30.22 293.80 -8.59 -38.80 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.54 Total: -0.20 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.29 Total: -13.01 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -1.17 Total: -46.88 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.22 -8.59 -38.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701489624.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.231 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds