Wall clock time and date at job start Mon Mar 30 2020 02:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46895 * 111.00256 * 2 1 4 4 C 1.46893 * 110.99959 * 123.95847 * 2 1 3 5 5 C 1.53783 * 113.61582 * 67.76859 * 4 2 1 6 6 C 1.53780 * 87.07968 * 139.98037 * 5 4 2 7 7 N 1.46908 * 113.61669 * 220.01980 * 6 5 4 8 8 C 1.46896 * 111.00291 * 205.00546 * 7 6 5 9 9 C 1.52993 * 109.47266 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.47112 * 179.97438 * 9 8 7 11 11 H 1.07990 * 120.00117 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99735 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00406 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99745 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47083 * 89.99997 * 14 12 10 16 16 H 1.48500 * 109.46962 * 209.99472 * 14 12 10 17 17 H 1.48496 * 109.47426 * 329.99910 * 14 12 10 18 18 C 1.53776 * 87.08223 * 334.56644 * 6 5 4 19 19 H 1.09004 * 109.46704 * 296.04711 * 1 2 3 20 20 H 1.09003 * 109.47355 * 56.03895 * 1 2 3 21 21 H 1.09000 * 109.47325 * 176.04743 * 1 2 3 22 22 H 1.08994 * 109.47224 * 186.34348 * 3 2 1 23 23 H 1.09004 * 109.47250 * 306.34531 * 3 2 1 24 24 H 1.08997 * 109.47108 * 66.34147 * 3 2 1 25 25 H 1.08998 * 112.91074 * 296.51762 * 4 2 1 26 26 H 1.09001 * 113.61540 * 25.43265 * 5 4 2 27 27 H 1.09001 * 113.61932 * 254.52593 * 5 4 2 28 28 H 1.08998 * 113.61577 * 89.11754 * 6 5 4 29 29 H 1.00894 * 111.00195 * 81.04277 * 7 6 5 30 30 H 1.09001 * 109.46908 * 299.99826 * 8 7 6 31 31 H 1.09006 * 109.47380 * 59.99255 * 8 7 6 32 32 H 1.09001 * 109.47040 * 299.99775 * 9 8 7 33 33 H 1.08997 * 109.47289 * 59.99515 * 9 8 7 34 34 H 0.96997 * 120.00535 * 180.02562 * 13 12 10 35 35 H 1.09005 * 113.60957 * 139.98016 * 18 6 5 36 36 H 1.08996 * 113.61493 * 270.88313 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.7185 -2.2759 1.0444 6 6 3.1387 -2.4904 1.5938 7 7 3.8563 -3.6006 0.9528 8 6 4.8914 -4.1424 1.8432 9 6 5.6148 -5.2942 1.1427 10 6 6.6771 -5.8497 2.0560 11 1 6.8221 -5.4235 3.0376 12 6 7.4647 -6.9013 1.6379 13 7 7.2885 -7.4201 0.4423 14 14 8.7810 -7.5902 2.7702 15 1 8.2015 -8.6780 3.5986 16 1 9.9003 -8.1300 1.9571 17 1 9.2875 -6.5106 3.6549 18 6 3.4884 -1.1118 1.0092 19 1 -0.3633 0.4513 0.9233 20 1 -0.3634 0.5741 -0.8524 21 1 -0.3634 -1.0252 -0.0708 22 1 3.0792 1.3445 -0.1135 23 1 1.5572 1.9289 -0.8278 24 1 1.7408 1.8583 0.9413 25 1 1.7290 -0.3319 2.1011 26 1 1.5868 -2.6335 0.0232 27 1 0.9333 -2.6182 1.7185 28 1 3.1849 -2.5277 2.6822 29 1 4.2524 -3.3135 0.0704 30 1 5.6077 -3.3578 2.0873 31 1 4.4275 -4.5085 2.7592 32 1 4.8982 -6.0786 0.8991 33 1 6.0785 -4.9285 0.2267 34 1 7.8423 -8.1601 0.1482 35 1 4.1320 -0.5142 1.6550 36 1 3.8405 -1.1511 -0.0215 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701489624.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:31 Heat of formation + Delta-G solvation = -5.790660 kcal Electronic energy + Delta-G solvation = -13948.328282 eV Core-core repulsion = 11659.764255 eV Total energy + Delta-G solvation = -2288.564027 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.55876 -37.29697 -35.67847 -34.12490 -30.63711 -28.71503 -26.63295 -26.17244 -25.24773 -22.55262 -22.23680 -20.33035 -18.52183 -17.09015 -16.73893 -16.41974 -16.00202 -15.66089 -15.38495 -14.78309 -14.48546 -14.09851 -13.46669 -13.39084 -13.14591 -13.02164 -12.79535 -12.78748 -12.53100 -12.50555 -12.10274 -11.95857 -11.69841 -11.36017 -11.24212 -11.01168 -10.55794 -9.29950 -9.15800 -8.19445 -6.31294 1.41020 1.42926 1.53886 2.41390 2.99959 3.13866 3.44210 3.64385 3.76879 3.99775 4.05482 4.29428 4.47885 4.49594 4.58587 4.65088 4.68847 4.71811 4.82676 4.91916 5.01510 5.03590 5.07484 5.08739 5.24924 5.26383 5.47326 5.69551 5.81208 6.12719 6.16224 6.19825 6.34986 6.57549 6.86301 7.38100 8.92857 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.081764 B = 0.004559 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.367443 B = 6140.547816 C = 6203.012502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.552 5.552 3 C 0.025 3.975 4 C 0.063 3.937 5 C -0.109 4.109 6 C 0.060 3.940 7 N -0.686 5.686 8 C 0.085 3.915 9 C 0.030 3.970 10 C -0.545 4.545 11 H 0.061 0.939 12 C 0.000 4.000 13 N -0.933 5.933 14 Si 0.968 3.032 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.262 1.262 18 C -0.147 4.147 19 H 0.029 0.971 20 H 0.076 0.924 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.028 0.972 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.340 0.660 30 H 0.019 0.981 31 H 0.057 0.943 32 H -0.007 1.007 33 H -0.010 1.010 34 H 0.264 0.736 35 H 0.067 0.933 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.456 16.236 1.542 19.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.276 5.276 3 C -0.123 4.123 4 C -0.046 4.046 5 C -0.147 4.147 6 C -0.051 4.051 7 N -0.315 5.315 8 C -0.044 4.044 9 C -0.008 4.008 10 C -0.584 4.584 11 H 0.079 0.921 12 C -0.198 4.198 13 N -0.573 5.573 14 Si 0.792 3.208 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.186 1.186 18 C -0.187 4.187 19 H 0.047 0.953 20 H 0.095 0.905 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.095 0.905 24 H 0.047 0.953 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.158 0.842 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.012 0.988 33 H 0.009 0.991 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.707 15.405 1.178 19.384 hybrid contribution 1.125 0.448 0.889 1.502 sum -10.582 15.853 2.067 19.172 Atomic orbital electron populations 1.22373 0.86525 1.02539 1.00878 1.62174 1.08817 1.14469 1.42148 1.22364 1.00910 0.88232 1.00803 1.22916 0.95467 0.93872 0.92309 1.23037 0.96167 0.93687 1.01848 1.22975 0.95641 0.88148 0.98373 1.60436 1.30303 1.34239 1.06570 1.21792 0.91383 0.95676 0.95529 1.18944 0.93800 0.93180 0.94859 1.21626 1.18062 1.16798 1.01891 0.92087 1.25996 1.00019 0.97001 0.96771 1.70112 1.41283 1.25706 1.20163 0.85403 0.78129 0.78723 0.78504 1.19733 1.20678 1.18649 1.23641 0.96056 0.97451 1.01521 0.95271 0.90508 0.91469 0.91754 0.90451 0.95307 0.91100 0.90043 0.91009 0.88788 0.84192 0.96293 0.92420 0.98838 0.99122 0.92728 0.91407 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.45 127.69 1.21 1.62 16 2 N -0.55 -11.34 4.96 -920.17 -4.56 -15.90 16 3 C 0.02 0.42 9.46 127.69 1.21 1.63 16 4 C 0.06 1.37 3.17 45.44 0.14 1.52 16 5 C -0.11 -2.69 6.85 31.12 0.21 -2.48 16 6 C 0.06 1.70 4.18 45.44 0.19 1.89 16 7 N -0.69 -25.16 6.62 -488.86 -3.24 -28.40 16 8 C 0.09 3.67 5.47 86.30 0.47 4.14 16 9 C 0.03 1.63 5.23 29.85 0.16 1.78 16 10 C -0.55 -31.73 9.11 25.60 0.23 -31.49 16 11 H 0.06 3.38 7.74 -2.92 -0.02 3.36 16 12 C 0.00 0.00 5.46 84.65 0.46 0.46 16 13 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 14 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 18 C -0.15 -3.62 6.86 31.12 0.21 -3.41 16 19 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 20 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 21 H 0.07 1.17 7.57 -2.39 -0.02 1.15 16 22 H 0.06 1.14 7.74 -2.39 -0.02 1.12 16 23 H 0.08 1.11 8.08 -2.38 -0.02 1.09 16 24 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.09 2.63 7.87 -2.39 -0.02 2.61 16 29 H 0.34 12.36 8.19 -89.70 -0.74 11.63 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 2.47 8.13 -2.38 -0.02 2.45 16 32 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 33 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 34 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.08 2.20 7.82 -2.39 -0.02 2.18 16 Total: -1.00 -64.34 293.80 -0.70 -65.04 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.29 Total: 14.43 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 4.50 Total: -24.33 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -7.51 Total: -101.89 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -64.34 -0.70 -65.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701489624.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.249 kcal (2) G-P(sol) polarization free energy of solvation -64.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds