Wall clock time and date at job start Mon Mar 30 2020 02:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00524 * 2 1 4 4 C 1.46906 * 110.99746 * 123.95118 * 2 1 3 5 5 C 1.53002 * 109.47053 * 169.99658 * 4 2 1 6 6 C 1.52996 * 109.46891 * 179.97438 * 5 4 2 7 7 H 1.09004 * 110.88737 * 51.12680 * 6 5 4 8 8 C 1.55158 * 111.00267 * 175.00298 * 6 5 4 9 9 C 1.54323 * 102.94051 * 153.57856 * 8 6 5 10 10 N 1.47011 * 107.27300 * 337.80453 * 9 8 6 11 11 C 1.36940 * 125.64957 * 178.92000 * 10 9 8 12 12 H 1.08002 * 120.00365 * 180.02562 * 11 10 9 13 13 C 1.38808 * 119.99811 * 0.02579 * 11 10 9 14 14 N 1.31615 * 120.00464 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00026 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46829 * 90.00190 * 15 13 11 17 17 H 1.48500 * 109.47396 * 210.00016 * 15 13 11 18 18 H 1.48498 * 109.46950 * 330.00684 * 15 13 11 19 19 C 1.47422 * 108.70429 * 358.94278 * 10 9 8 20 20 H 1.08993 * 109.47051 * 296.05424 * 1 2 3 21 21 H 1.09002 * 109.46471 * 56.04596 * 1 2 3 22 22 H 1.08994 * 109.47227 * 176.04191 * 1 2 3 23 23 H 1.08998 * 109.47452 * 183.95577 * 3 2 1 24 24 H 1.09000 * 109.46497 * 303.95201 * 3 2 1 25 25 H 1.09001 * 109.46901 * 63.94983 * 3 2 1 26 26 H 1.08992 * 109.47459 * 289.99741 * 4 2 1 27 27 H 1.09004 * 109.47040 * 49.99892 * 4 2 1 28 28 H 1.09001 * 109.47142 * 300.00160 * 5 4 2 29 29 H 1.09004 * 109.47006 * 60.00213 * 5 4 2 30 30 H 1.09002 * 110.71817 * 271.93631 * 8 6 5 31 31 H 1.09000 * 110.72371 * 35.03502 * 8 6 5 32 32 H 1.08997 * 109.88325 * 97.22887 * 9 8 6 33 33 H 1.09007 * 109.88156 * 218.23306 * 9 8 6 34 34 H 0.97001 * 120.00618 * 180.02562 * 14 13 11 35 35 H 1.09000 * 110.37010 * 265.29079 * 19 10 9 36 36 H 1.09004 * 110.36840 * 142.96661 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 3.5044 -0.9554 0.9704 6 6 4.0527 -1.7526 2.1556 7 1 3.4758 -2.6643 2.3110 8 6 5.5582 -2.0736 1.9611 9 6 6.0705 -2.2188 3.4096 10 7 5.1326 -1.4939 4.2791 11 6 5.2195 -1.3981 5.6424 12 1 4.4767 -0.8400 6.1930 13 6 6.2624 -2.0182 6.3166 14 7 7.1681 -2.6978 5.6456 15 14 6.3815 -1.8868 8.1762 16 1 5.6389 -3.0113 8.8003 17 1 7.8074 -1.9471 8.5865 18 1 5.7926 -0.5979 8.6201 19 6 4.0826 -0.8877 3.4404 20 1 -0.3633 0.4513 0.9232 21 1 -0.3632 0.5740 -0.8525 22 1 -0.3633 -1.0251 -0.0709 23 1 3.0829 1.3431 -0.0709 24 1 1.5899 1.9162 -0.8525 25 1 1.7044 1.8723 0.9233 26 1 1.7975 -0.2248 2.0628 27 1 1.5088 -1.7407 1.1757 28 1 3.7023 -1.4967 0.0452 29 1 3.9909 0.0192 0.9324 30 1 5.6858 -3.0063 1.4117 31 1 6.0644 -1.2544 1.4504 32 1 6.0973 -3.2719 3.6895 33 1 7.0679 -1.7873 3.4950 34 1 7.8967 -3.1315 6.1168 35 1 4.3392 0.1435 3.1976 36 1 3.1193 -0.9301 3.9488 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701495901.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:09 Heat of formation + Delta-G solvation = 19.766429 kcal Electronic energy + Delta-G solvation = -14485.514989 eV Core-core repulsion = 12198.059200 eV Total energy + Delta-G solvation = -2287.455789 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.21358 -36.83885 -33.17505 -30.93421 -28.96420 -27.62218 -26.80613 -24.86960 -23.13198 -21.01308 -19.84725 -19.37833 -16.78962 -15.57264 -15.30698 -15.00436 -14.55531 -14.33000 -13.59667 -13.31710 -12.46457 -12.31768 -12.18777 -11.86740 -11.82890 -11.67907 -11.51354 -11.21552 -10.85087 -10.75011 -10.52805 -10.08484 -9.84068 -9.75590 -9.66435 -9.53512 -8.54110 -8.35480 -6.75367 -5.65222 -2.98220 3.42932 3.47555 3.49799 3.97917 4.54966 5.03629 5.12759 5.22634 5.34900 5.45610 5.51672 5.54789 5.57544 5.73748 5.77167 5.84867 5.86318 5.90804 5.98534 6.17831 6.31440 6.42061 6.50641 6.64168 6.71562 6.84190 7.02047 7.05871 7.10165 7.62845 7.72485 7.89846 8.33259 9.28868 9.89631 10.57052 11.46562 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053123 B = 0.006293 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.949931 B = 4448.304697 C = 4758.109526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.550 5.550 3 C 0.021 3.979 4 C 0.054 3.946 5 C -0.100 4.100 6 C -0.103 4.103 7 H 0.072 0.928 8 C -0.138 4.138 9 C 0.177 3.823 10 N -0.607 5.607 11 C -0.227 4.227 12 H 0.076 0.924 13 C -0.010 4.010 14 N -0.923 5.923 15 Si 0.911 3.089 16 H -0.289 1.289 17 H -0.291 1.291 18 H -0.282 1.282 19 C 0.142 3.858 20 H 0.023 0.977 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.025 0.975 26 H 0.037 0.963 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.040 0.960 34 H 0.251 0.749 35 H 0.015 0.985 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.531 4.381 -10.601 14.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.274 5.274 3 C -0.127 4.127 4 C -0.074 4.074 5 C -0.139 4.139 6 C -0.123 4.123 7 H 0.090 0.910 8 C -0.177 4.177 9 C 0.052 3.948 10 N -0.334 5.334 11 C -0.355 4.355 12 H 0.094 0.906 13 C -0.206 4.206 14 N -0.571 5.571 15 Si 0.741 3.259 16 H -0.217 1.217 17 H -0.217 1.217 18 H -0.208 1.208 19 C 0.016 3.984 20 H 0.042 0.958 21 H 0.083 0.917 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.032 0.968 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -9.226 4.087 -10.851 14.818 hybrid contribution -0.168 0.440 1.776 1.838 sum -9.394 4.527 -9.074 13.824 Atomic orbital electron populations 1.22362 0.87818 1.02054 1.00182 1.62035 1.07459 1.13959 1.43956 1.22430 1.01388 0.88809 1.00091 1.22229 0.96430 0.97849 0.90858 1.21528 0.93547 1.00384 0.98398 1.22327 0.96586 0.98625 0.94731 0.90992 1.22888 0.94910 0.99940 0.99949 1.21119 0.92676 0.96907 0.84057 1.44502 1.26639 1.59882 1.02349 1.19071 1.08124 1.27540 0.80795 0.90598 1.24796 0.97537 1.00234 0.98016 1.69977 1.15303 1.38319 1.33462 0.86133 0.76870 0.77632 0.85225 1.21650 1.21681 1.20760 1.21584 0.92284 0.94289 0.90257 0.95797 0.91711 0.91482 0.90862 0.91863 0.95652 0.94453 0.90974 0.91582 0.92061 0.92430 0.92664 0.93791 0.94200 0.93841 0.96752 0.94901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.57 60.06 0.57 0.82 16 2 N -0.55 -6.78 5.02 -251.26 -1.26 -8.04 16 3 C 0.02 0.24 9.32 60.07 0.56 0.80 16 4 C 0.05 0.73 4.86 -3.82 -0.02 0.71 16 5 C -0.10 -1.47 4.65 -26.73 -0.12 -1.59 16 6 C -0.10 -1.85 3.01 -88.47 -0.27 -2.11 16 7 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 8 C -0.14 -2.70 6.42 -24.90 -0.16 -2.86 16 9 C 0.18 4.49 5.37 -3.07 -0.02 4.47 16 10 N -0.61 -16.19 3.39 -170.08 -0.58 -16.77 16 11 C -0.23 -6.55 10.28 -15.06 -0.15 -6.70 16 12 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 13 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 14 N -0.92 -27.89 10.31 55.49 0.57 -27.32 16 15 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 C 0.14 3.05 6.18 -2.53 -0.02 3.04 16 20 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 21 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 22 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 23 H 0.07 0.83 6.47 -51.93 -0.34 0.50 16 24 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 25 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.04 0.53 7.73 -51.93 -0.40 0.13 16 27 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.90 6.37 -51.93 -0.33 0.57 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 32 H 0.04 1.22 7.38 -51.93 -0.38 0.84 16 33 H 0.04 1.11 7.50 -51.92 -0.39 0.72 16 34 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.01 0.32 7.90 -51.93 -0.41 -0.09 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 283.56 15.07 4.27 4.27 Total: -1.00 -30.91 283.56 -8.17 -39.08 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -6.43 Total: -4.97 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 0.28 Total: -3.82 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -1.27 Total: -52.13 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.91 -8.17 -39.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701495901.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.848 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds