Wall clock time and date at job start Mon Mar 30 2020 02:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00524 * 2 1 4 4 C 1.46906 * 110.99746 * 123.95118 * 2 1 3 5 5 C 1.53002 * 109.47053 * 169.99658 * 4 2 1 6 6 C 1.52996 * 109.46891 * 179.97438 * 5 4 2 7 7 H 1.09004 * 110.88737 * 51.12680 * 6 5 4 8 8 C 1.55158 * 111.00267 * 175.00298 * 6 5 4 9 9 C 1.54323 * 102.94051 * 153.57856 * 8 6 5 10 10 N 1.47011 * 107.27300 * 337.80453 * 9 8 6 11 11 C 1.36940 * 125.64957 * 178.92000 * 10 9 8 12 12 H 1.08002 * 120.00365 * 180.02562 * 11 10 9 13 13 C 1.38808 * 119.99811 * 0.02579 * 11 10 9 14 14 N 1.31615 * 120.00464 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00026 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46829 * 90.00190 * 15 13 11 17 17 H 1.48500 * 109.47396 * 210.00016 * 15 13 11 18 18 H 1.48498 * 109.46950 * 330.00684 * 15 13 11 19 19 C 1.47422 * 108.70429 * 358.94278 * 10 9 8 20 20 H 1.08993 * 109.47051 * 296.05424 * 1 2 3 21 21 H 1.09002 * 109.46471 * 56.04596 * 1 2 3 22 22 H 1.08994 * 109.47227 * 176.04191 * 1 2 3 23 23 H 1.08998 * 109.47452 * 183.95577 * 3 2 1 24 24 H 1.09000 * 109.46497 * 303.95201 * 3 2 1 25 25 H 1.09001 * 109.46901 * 63.94983 * 3 2 1 26 26 H 1.08992 * 109.47459 * 289.99741 * 4 2 1 27 27 H 1.09004 * 109.47040 * 49.99892 * 4 2 1 28 28 H 1.09001 * 109.47142 * 300.00160 * 5 4 2 29 29 H 1.09004 * 109.47006 * 60.00213 * 5 4 2 30 30 H 1.09002 * 110.71817 * 271.93631 * 8 6 5 31 31 H 1.09000 * 110.72371 * 35.03502 * 8 6 5 32 32 H 1.08997 * 109.88325 * 97.22887 * 9 8 6 33 33 H 1.09007 * 109.88156 * 218.23306 * 9 8 6 34 34 H 0.97001 * 120.00618 * 180.02562 * 14 13 11 35 35 H 1.09000 * 110.37010 * 265.29079 * 19 10 9 36 36 H 1.09004 * 110.36840 * 142.96661 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 3.5044 -0.9554 0.9704 6 6 4.0527 -1.7526 2.1556 7 1 3.4758 -2.6643 2.3110 8 6 5.5582 -2.0736 1.9611 9 6 6.0705 -2.2188 3.4096 10 7 5.1326 -1.4939 4.2791 11 6 5.2195 -1.3981 5.6424 12 1 4.4767 -0.8400 6.1930 13 6 6.2624 -2.0182 6.3166 14 7 7.1681 -2.6978 5.6456 15 14 6.3815 -1.8868 8.1762 16 1 5.6389 -3.0113 8.8003 17 1 7.8074 -1.9471 8.5865 18 1 5.7926 -0.5979 8.6201 19 6 4.0826 -0.8877 3.4404 20 1 -0.3633 0.4513 0.9232 21 1 -0.3632 0.5740 -0.8525 22 1 -0.3633 -1.0251 -0.0709 23 1 3.0829 1.3431 -0.0709 24 1 1.5899 1.9162 -0.8525 25 1 1.7044 1.8723 0.9233 26 1 1.7975 -0.2248 2.0628 27 1 1.5088 -1.7407 1.1757 28 1 3.7023 -1.4967 0.0452 29 1 3.9909 0.0192 0.9324 30 1 5.6858 -3.0063 1.4117 31 1 6.0644 -1.2544 1.4504 32 1 6.0973 -3.2719 3.6895 33 1 7.0679 -1.7873 3.4950 34 1 7.8967 -3.1315 6.1168 35 1 4.3392 0.1435 3.1976 36 1 3.1193 -0.9301 3.9488 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701495901.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:09 Heat of formation + Delta-G solvation = -0.498364 kcal Electronic energy + Delta-G solvation = -14486.393736 eV Core-core repulsion = 12198.059200 eV Total energy + Delta-G solvation = -2288.334536 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.65316 -38.13063 -35.01310 -32.66155 -30.76327 -28.50176 -28.32432 -26.69702 -24.50185 -22.34082 -21.58725 -20.85824 -18.85694 -16.98376 -16.60363 -16.30076 -16.13374 -15.60150 -15.28977 -14.69771 -14.04527 -13.81620 -13.61992 -13.31865 -13.04216 -12.98571 -12.81718 -12.67531 -12.51046 -12.46641 -12.02658 -11.90173 -11.69415 -11.39547 -11.27122 -11.22226 -10.71267 -9.28505 -8.89811 -7.85444 -5.21358 1.44122 1.46795 1.55494 2.49082 3.04325 3.32423 3.72123 3.88071 3.96722 4.18526 4.31624 4.33033 4.45807 4.54485 4.67874 4.69901 4.70670 4.80002 4.81796 4.89382 5.01943 5.03260 5.06364 5.16669 5.22722 5.33639 5.43953 5.55351 5.69505 5.78386 6.09987 6.15279 6.20107 7.10129 7.78213 8.43598 9.25183 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053123 B = 0.006293 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.949931 B = 4448.304697 C = 4758.109526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.558 5.558 3 C 0.019 3.981 4 C 0.058 3.942 5 C -0.087 4.087 6 C -0.086 4.086 7 H 0.072 0.928 8 C -0.125 4.125 9 C 0.183 3.817 10 N -0.631 5.631 11 C -0.246 4.246 12 H 0.081 0.919 13 C -0.068 4.068 14 N -0.953 5.953 15 Si 0.981 3.019 16 H -0.284 1.284 17 H -0.293 1.293 18 H -0.269 1.269 19 C 0.138 3.862 20 H 0.022 0.978 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.021 0.979 26 H 0.026 0.974 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.008 0.992 33 H 0.002 0.998 34 H 0.247 0.753 35 H 0.019 0.981 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.895 5.004 -11.520 16.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.282 5.282 3 C -0.129 4.129 4 C -0.070 4.070 5 C -0.125 4.125 6 C -0.106 4.106 7 H 0.091 0.909 8 C -0.163 4.163 9 C 0.057 3.943 10 N -0.357 5.357 11 C -0.375 4.375 12 H 0.098 0.902 13 C -0.261 4.261 14 N -0.602 5.602 15 Si 0.808 3.192 16 H -0.211 1.211 17 H -0.219 1.219 18 H -0.194 1.194 19 C 0.013 3.987 20 H 0.041 0.959 21 H 0.098 0.902 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.099 0.901 25 H 0.039 0.961 26 H 0.044 0.956 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.027 0.973 33 H 0.021 0.979 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.626 4.731 -11.792 16.564 hybrid contribution 0.227 0.277 2.041 2.072 sum -10.399 5.008 -9.752 15.110 Atomic orbital electron populations 1.22433 0.86488 1.02779 1.00820 1.62041 1.08749 1.14420 1.43033 1.22478 1.01265 0.88446 1.00674 1.22122 0.95635 0.98272 0.90967 1.21385 0.94268 0.99867 0.97013 1.22216 0.95658 0.98400 0.94318 0.90944 1.22768 0.95757 1.01774 0.96047 1.20912 0.91410 0.94302 0.87627 1.44855 1.28178 1.60300 1.02406 1.19492 1.08237 1.27369 0.82396 0.90154 1.25693 0.97346 1.00246 1.02793 1.70209 1.15746 1.39203 1.35055 0.85051 0.76540 0.78085 0.79492 1.21110 1.21924 1.19353 1.21772 0.90905 0.94765 0.91244 0.95920 0.90154 0.90929 0.91231 0.90121 0.96080 0.95607 0.90524 0.90206 0.91969 0.90197 0.91189 0.97334 0.97927 0.94405 0.96353 0.94644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.57 127.69 1.22 1.63 16 2 N -0.56 -12.27 5.02 -948.85 -4.76 -17.03 16 3 C 0.02 0.39 9.32 127.69 1.19 1.58 16 4 C 0.06 1.42 4.86 86.30 0.42 1.84 16 5 C -0.09 -2.31 4.65 30.59 0.14 -2.17 16 6 C -0.09 -2.94 3.01 -9.40 -0.03 -2.97 16 7 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 8 C -0.13 -4.72 6.42 31.78 0.20 -4.51 16 9 C 0.18 9.47 5.37 86.73 0.47 9.94 16 10 N -0.63 -34.08 3.39 -692.02 -2.35 -36.43 16 11 C -0.25 -14.38 10.28 84.03 0.86 -13.52 16 12 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 13 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 14 N -0.95 -59.35 10.31 21.65 0.22 -59.13 16 15 Si 0.98 46.93 29.55 68.60 2.03 48.96 16 16 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 17 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 C 0.14 5.84 6.18 86.86 0.54 6.37 16 20 H 0.02 0.40 8.14 -2.39 -0.02 0.39 16 21 H 0.08 1.17 8.12 -2.39 -0.02 1.15 16 22 H 0.07 1.20 8.12 -2.39 -0.02 1.18 16 23 H 0.07 1.42 6.47 -2.39 -0.02 1.40 16 24 H 0.08 1.30 8.12 -2.39 -0.02 1.29 16 25 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.03 0.69 7.73 -2.39 -0.02 0.67 16 27 H 0.08 1.81 8.06 -2.38 -0.02 1.79 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 1.67 6.37 -2.38 -0.02 1.65 16 30 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.07 2.44 8.04 -2.39 -0.02 2.42 16 32 H 0.01 0.49 7.38 -2.39 -0.02 0.47 16 33 H 0.00 0.14 7.50 -2.38 -0.02 0.13 16 34 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.02 0.78 7.90 -2.39 -0.02 0.76 16 36 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -67.18 283.56 1.63 -65.55 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: 1.01 Total: 3.43 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 5.48 Total: -5.36 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -6.89 Total: -112.58 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -67.18 1.63 -65.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701495901.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.048 kcal (2) G-P(sol) polarization free energy of solvation -67.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds