Wall clock time and date at job start Mon Mar 30 2020 02:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36937 * 120.00082 * 2 1 4 4 H 1.08004 * 120.00045 * 166.79427 * 3 2 1 5 5 C 1.38809 * 120.00248 * 346.79217 * 3 2 1 6 6 N 1.31623 * 119.99736 * 343.74540 * 5 3 2 7 7 Si 1.86800 * 120.00186 * 163.74620 * 5 3 2 8 8 H 1.48494 * 109.47280 * 59.99931 * 7 5 3 9 9 H 1.48502 * 109.47168 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46711 * 299.99920 * 7 5 3 11 11 C 1.46497 * 120.00003 * 180.02562 * 2 1 3 12 12 C 1.53006 * 109.47243 * 289.43814 * 11 2 1 13 13 N 1.46900 * 109.46781 * 304.99969 * 12 11 2 14 14 C 1.53005 * 109.47244 * 49.43848 * 11 2 1 15 15 C 1.52995 * 109.46951 * 60.00182 * 14 11 2 16 16 C 1.52998 * 109.47326 * 60.00372 * 15 14 11 17 17 C 1.53005 * 109.46801 * 299.99719 * 16 15 14 18 18 C 1.52997 * 109.47186 * 60.00351 * 17 16 15 19 19 H 1.09002 * 109.46998 * 185.75982 * 1 2 3 20 20 H 1.08999 * 109.46620 * 305.75587 * 1 2 3 21 21 H 1.09001 * 109.47259 * 65.75411 * 1 2 3 22 22 H 0.97000 * 119.99753 * 179.97438 * 6 5 3 23 23 H 1.08998 * 109.47014 * 64.99943 * 12 11 2 24 24 H 1.08999 * 109.47227 * 185.00118 * 12 11 2 25 25 H 1.00899 * 110.99614 * 179.97438 * 13 12 11 26 26 H 1.00900 * 111.00272 * 303.95066 * 13 12 11 27 27 H 1.08996 * 109.46974 * 300.00049 * 14 11 2 28 28 H 1.08998 * 109.47273 * 180.02562 * 14 11 2 29 29 H 1.09002 * 109.47240 * 299.99617 * 15 14 11 30 30 H 1.09006 * 109.46886 * 180.02562 * 15 14 11 31 31 H 1.08998 * 109.47178 * 59.99742 * 16 15 14 32 32 H 1.08996 * 109.47232 * 180.02562 * 16 15 14 33 33 H 1.08996 * 109.46974 * 180.02562 * 17 16 15 34 34 H 1.08998 * 109.47273 * 299.99964 * 17 16 15 35 35 H 1.09000 * 109.47134 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.47331 * 59.99648 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2083 1.1983 0.2137 5 6 1.4833 2.3722 -0.2747 6 7 0.2952 2.3437 -0.8405 7 14 2.2725 4.0088 0.1588 8 1 3.5608 4.1448 -0.5671 9 1 1.3636 5.1159 -0.2333 10 1 2.5200 4.0669 1.6218 11 6 2.1975 -1.2687 -0.0006 12 6 2.0368 -1.9511 1.3594 13 7 2.4611 -1.0302 2.4224 14 6 1.6402 -2.1789 -1.0969 15 6 1.8010 -1.4967 -2.4568 16 6 3.2840 -1.2293 -2.7211 17 6 3.8413 -0.3190 -1.6248 18 6 3.6806 -1.0013 -0.2648 19 1 -0.3633 -1.0225 0.1031 20 1 -0.3632 0.6005 0.8340 21 1 -0.3634 0.4220 -0.9370 22 1 -0.1706 3.1727 -1.0321 23 1 0.9915 -2.2216 1.5089 24 1 2.6527 -2.8498 1.3901 25 1 2.3640 -1.4577 3.3312 26 1 3.4071 -0.7138 2.2705 27 1 0.5836 -2.3695 -0.9086 28 1 2.1848 -3.1231 -1.0970 29 1 1.2559 -0.5527 -2.4564 30 1 1.4035 -2.1450 -3.2378 31 1 3.8290 -2.1732 -2.7215 32 1 3.3985 -0.7428 -3.6897 33 1 4.8978 -0.1281 -1.8133 34 1 3.2964 0.6250 -1.6244 35 1 4.0773 -0.3527 0.5162 36 1 4.2256 -1.9453 -0.2652 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713345636.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:49 Heat of formation + Delta-G solvation = 5.278717 kcal Electronic energy + Delta-G solvation = -15910.516557 eV Core-core repulsion = 13622.432534 eV Total energy + Delta-G solvation = -2288.084023 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.51714 -35.77248 -35.09493 -32.57607 -31.70359 -30.11891 -27.52586 -25.45767 -24.47066 -23.15274 -21.38515 -19.66534 -18.30729 -17.13591 -16.74743 -15.85889 -15.57805 -14.96277 -14.91883 -14.50955 -14.23051 -13.96379 -13.77131 -13.02767 -12.75322 -12.69988 -12.55524 -12.47577 -12.35039 -12.12012 -11.80208 -11.67780 -11.57902 -11.13380 -10.83467 -10.50660 -10.30504 -9.20860 -8.51834 -7.47435 -4.89463 1.50061 1.54442 1.57963 2.66378 3.54227 3.66536 3.95393 4.08668 4.15676 4.23731 4.53148 4.58577 4.71402 4.76059 4.85192 4.88662 4.89911 4.96952 5.06132 5.13794 5.19377 5.25428 5.49412 5.58538 5.63180 5.65873 5.72990 5.91451 5.99783 6.03193 6.51127 6.60496 6.86967 7.41030 8.18717 8.58696 9.47226 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027666 B = 0.014430 C = 0.012937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.841897 B = 1939.963782 C = 2163.781603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.576 5.576 3 C -0.184 4.184 4 H 0.080 0.920 5 C -0.077 4.077 6 N -0.946 5.946 7 Si 0.944 3.056 8 H -0.280 1.280 9 H -0.308 1.308 10 H -0.292 1.292 11 C 0.193 3.807 12 C 0.061 3.939 13 N -0.844 5.844 14 C -0.118 4.118 15 C -0.107 4.107 16 C -0.102 4.102 17 C -0.131 4.131 18 C -0.097 4.097 19 H 0.018 0.982 20 H -0.022 1.022 21 H 0.035 0.965 22 H 0.234 0.766 23 H 0.048 0.952 24 H 0.035 0.965 25 H 0.337 0.663 26 H 0.338 0.662 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.037 0.963 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.534 -10.642 0.579 12.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.297 5.297 3 C -0.315 4.315 4 H 0.097 0.903 5 C -0.269 4.269 6 N -0.598 5.598 7 Si 0.777 3.223 8 H -0.206 1.206 9 H -0.235 1.235 10 H -0.219 1.219 11 C 0.104 3.896 12 C -0.072 4.072 13 N -0.375 5.375 14 C -0.157 4.157 15 C -0.145 4.145 16 C -0.140 4.140 17 C -0.169 4.169 18 C -0.135 4.135 19 H 0.036 0.964 20 H -0.004 1.004 21 H 0.053 0.947 22 H 0.044 0.956 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.150 0.850 26 H 0.152 0.848 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.863 -10.052 0.287 11.641 hybrid contribution 0.512 0.712 0.533 1.027 sum 6.375 -9.340 0.821 11.338 Atomic orbital electron populations 1.20585 0.83846 0.93618 0.98540 1.43752 1.00853 1.00604 1.84480 1.19325 0.93602 0.84518 1.34049 0.90253 1.25306 0.98142 0.99911 1.03503 1.70227 1.16328 1.24388 1.48896 0.85627 0.77281 0.81763 0.77670 1.20594 1.23521 1.21924 1.20029 0.91948 0.85808 0.91795 1.22231 0.98925 0.92808 0.93209 1.58361 1.30746 1.43997 1.04398 1.21897 1.00219 0.98275 0.95357 1.21317 0.96967 0.99766 0.96432 1.21371 0.95560 0.99324 0.97708 1.21768 0.99639 1.00863 0.94619 1.21514 0.94955 0.99721 0.97307 0.96387 1.00358 0.94709 0.95643 0.93377 0.94688 0.85001 0.84812 0.93458 0.90544 0.94429 0.92321 0.91170 0.93235 0.92774 0.91310 0.92799 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.12 7.97 127.77 1.02 10.14 16 2 N -0.58 -27.06 1.74 -679.55 -1.18 -28.24 16 3 C -0.18 -9.56 6.63 84.03 0.56 -9.01 16 4 H 0.08 3.99 5.30 -2.91 -0.02 3.97 16 5 C -0.08 -4.34 5.25 84.86 0.45 -3.90 16 6 N -0.95 -57.07 10.24 21.65 0.22 -56.85 16 7 Si 0.94 46.82 29.58 68.60 2.03 48.85 16 8 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 9 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 10 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 11 C 0.19 7.09 0.41 3.61 0.00 7.09 16 12 C 0.06 2.00 5.70 86.31 0.49 2.49 16 13 N -0.84 -28.07 9.35 -186.71 -1.75 -29.82 16 14 C -0.12 -3.94 4.41 30.59 0.13 -3.81 16 15 C -0.11 -3.80 5.76 30.59 0.18 -3.63 16 16 C -0.10 -3.28 5.92 30.60 0.18 -3.10 16 17 C -0.13 -4.73 5.37 30.59 0.16 -4.57 16 18 C -0.10 -3.27 3.95 30.60 0.12 -3.15 16 19 H 0.02 0.80 6.16 -2.39 -0.01 0.78 16 20 H -0.02 -1.27 8.00 -2.39 -0.02 -1.29 16 21 H 0.03 1.99 6.33 -2.39 -0.02 1.97 16 22 H 0.23 14.12 8.31 -92.71 -0.77 13.35 16 23 H 0.05 1.67 7.72 -2.39 -0.02 1.65 16 24 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 25 H 0.34 9.28 9.08 -89.70 -0.81 8.46 16 26 H 0.34 10.80 7.25 -89.69 -0.65 10.15 16 27 H 0.05 1.64 6.64 -2.39 -0.02 1.63 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.04 1.70 7.33 -2.39 -0.02 1.68 16 30 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 3.15 5.12 -2.39 -0.01 3.13 16 35 H 0.05 1.91 5.32 -2.39 -0.01 1.89 16 36 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -61.78 263.15 2.23 -59.55 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -0.39 Total: 17.95 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 3.29 Total: -11.44 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -2.70 Total: -114.91 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -61.78 2.23 -59.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713345636.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.828 kcal (2) G-P(sol) polarization free energy of solvation -61.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds