Wall clock time and date at job start Mon Mar 30 2020 02:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00074 * 2 1 4 4 H 1.48498 * 109.47333 * 269.99985 * 3 2 1 5 5 H 1.48498 * 109.47066 * 29.99972 * 3 2 1 6 6 H 1.48504 * 109.47166 * 150.00063 * 3 2 1 7 7 C 1.37883 * 119.99632 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99717 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00004 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.47590 * 60.00152 * 9 7 2 11 11 N 1.46905 * 109.47066 * 299.99693 * 9 7 2 12 12 C 1.50704 * 109.46703 * 180.02562 * 9 7 2 13 13 C 1.33388 * 125.20388 * 259.99671 * 12 9 7 14 14 C 1.38427 * 114.92039 * 179.79664 * 13 12 9 15 15 C 1.33389 * 114.91930 * 0.42874 * 14 13 12 16 16 C 1.50699 * 125.20077 * 179.86062 * 15 14 13 17 17 O 1.42905 * 109.46972 * 89.71863 * 16 15 14 18 18 S 1.75886 * 125.20043 * 80.02768 * 12 9 7 19 19 H 0.97006 * 119.99798 * 359.97438 * 1 2 3 20 20 H 1.00901 * 111.00025 * 300.00309 * 11 9 7 21 21 H 1.00902 * 110.99881 * 63.95979 * 11 9 7 22 22 H 1.08003 * 122.53510 * 0.02562 * 13 12 9 23 23 H 1.08000 * 122.53845 * 180.27625 * 14 13 12 24 24 H 1.09004 * 109.47103 * 329.72050 * 16 15 14 25 25 H 1.09000 * 109.47247 * 209.71927 * 16 15 14 26 26 H 0.96705 * 113.99788 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6246 -2.5563 -0.8919 11 7 0.4059 -2.5777 1.1974 12 6 2.2303 -3.6446 -0.0015 13 6 2.5869 -4.3516 -1.0748 14 6 3.5078 -5.3562 -0.8320 15 6 3.8921 -5.4708 0.4402 16 6 4.8786 -6.4836 0.9617 17 8 6.1990 -5.9412 0.8939 18 16 3.0772 -4.2541 1.4145 19 1 -0.4850 0.8401 0.0004 20 1 0.9637 -2.5269 2.0368 21 1 -0.3014 -1.8582 1.1891 22 1 2.1901 -4.1528 -2.0595 23 1 3.8845 -6.0001 -1.6130 24 1 4.8257 -7.3880 0.3555 25 1 4.6380 -6.7255 1.9969 26 1 6.8873 -6.5404 1.2140 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713792118.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:23 Heat of formation + Delta-G solvation = -26.286498 kcal Electronic energy + Delta-G solvation = -11791.341636 eV Core-core repulsion = 9575.256862 eV Total energy + Delta-G solvation = -2216.084774 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.68430 -36.38756 -34.53463 -31.50298 -29.60130 -26.52844 -25.02539 -22.41582 -21.13293 -18.30784 -17.36971 -16.69742 -16.07849 -15.22244 -14.50875 -14.11068 -13.69413 -13.28794 -12.96900 -12.17836 -11.95146 -11.56387 -11.24351 -11.14463 -10.89216 -10.83766 -10.23731 -10.06674 -9.87536 -9.74256 -8.71138 -7.85614 -7.70033 -7.26777 -6.15140 -4.31995 1.71217 2.35248 2.83549 3.21493 3.28296 3.32627 3.46564 4.30409 4.60353 5.08106 5.23678 5.32881 5.52364 5.78286 6.24240 6.30612 6.57529 6.80085 7.00098 7.18534 7.52242 7.66963 7.69821 7.99057 8.56600 8.83768 9.01284 9.39719 10.82858 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.044795 B = 0.008546 C = 0.007986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.917271 B = 3275.641223 C = 3505.445739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.068 3.932 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.265 3.735 10 H 0.059 0.941 11 N -0.849 5.849 12 C -0.077 4.077 13 C -0.192 4.192 14 C -0.096 4.096 15 C -0.240 4.240 16 C 0.159 3.841 17 O -0.567 6.567 18 S 0.109 5.891 19 H 0.267 0.733 20 H 0.311 0.689 21 H 0.359 0.641 22 H 0.133 0.867 23 H 0.126 0.874 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.526 -9.834 1.969 11.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.135 4.135 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.586 4.586 8 H 0.077 0.923 9 C 0.153 3.847 10 H 0.077 0.923 11 N -0.379 5.379 12 C -0.196 4.196 13 C -0.221 4.221 14 C -0.129 4.129 15 C -0.357 4.357 16 C 0.080 3.920 17 O -0.372 6.372 18 S 0.373 5.627 19 H 0.077 0.923 20 H 0.120 0.880 21 H 0.176 0.824 22 H 0.151 0.849 23 H 0.144 0.856 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 5.821 -9.539 2.976 11.564 hybrid contribution 1.124 1.100 -1.242 2.004 sum 6.945 -8.439 1.734 11.066 Atomic orbital electron populations 1.69739 1.05873 1.27436 1.50172 1.25016 0.94987 0.99420 0.94106 0.86450 0.79863 0.82553 0.78370 1.20399 1.21044 1.19713 1.21821 0.93840 0.90682 1.52272 0.92304 1.17689 0.88099 0.86632 0.92305 0.92318 1.59554 1.18421 1.56247 1.03660 1.25374 1.00383 0.99613 0.94182 1.19916 1.03349 0.98928 0.99868 1.19940 0.98403 0.99246 0.95270 1.23916 1.07584 1.06096 0.98130 1.20255 0.80723 0.92411 0.98639 1.86657 1.16242 1.46035 1.88314 1.83943 1.38594 1.27385 1.12773 0.92303 0.87961 0.82381 0.84936 0.85606 0.92537 0.93151 0.77976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.49 11.54 55.43 0.64 -23.85 15 2 C 0.07 1.82 5.38 -17.82 -0.10 1.73 15 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.55 -14.89 8.71 -34.44 -0.30 -15.19 15 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 15 9 C 0.26 6.71 3.15 -70.01 -0.22 6.49 15 10 H 0.06 1.61 8.12 -51.93 -0.42 1.19 15 11 N -0.85 -20.55 9.11 -6.65 -0.06 -20.61 15 12 C -0.08 -1.73 5.39 -36.00 -0.19 -1.93 15 13 C -0.19 -3.96 10.04 -41.21 -0.41 -4.37 15 14 C -0.10 -1.74 10.05 -41.21 -0.41 -2.16 15 15 C -0.24 -4.30 6.14 -36.00 -0.22 -4.52 15 16 C 0.16 2.17 7.54 36.01 0.27 2.44 15 17 O -0.57 -7.89 13.64 -35.23 -0.48 -8.37 15 18 S 0.11 2.17 22.52 -107.50 -2.42 -0.25 15 19 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 20 H 0.31 7.27 8.32 -39.29 -0.33 6.95 15 21 H 0.36 9.18 7.08 -39.29 -0.28 8.90 15 22 H 0.13 2.57 8.06 -52.48 -0.42 2.14 15 23 H 0.13 1.92 8.06 -52.49 -0.42 1.50 15 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 15 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 15 26 H 0.37 2.95 9.12 45.56 0.42 3.37 15 LS Contribution 245.15 15.07 3.69 3.69 Total: -1.00 -29.68 245.15 -7.08 -36.76 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -1.84 Total: 14.04 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -1.59 Total: -17.51 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.58 Total: -44.46 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.48 Total: -8.37 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.42 Total: -0.25 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.68 -7.08 -36.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713792118.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.472 kcal (2) G-P(sol) polarization free energy of solvation -29.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds