Wall clock time and date at job start Mon Mar 30 2020 02:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00074 * 2 1 4 4 H 1.48498 * 109.47333 * 269.99985 * 3 2 1 5 5 H 1.48498 * 109.47066 * 29.99972 * 3 2 1 6 6 H 1.48504 * 109.47166 * 150.00063 * 3 2 1 7 7 C 1.37883 * 119.99632 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99717 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00004 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.47590 * 60.00152 * 9 7 2 11 11 N 1.46905 * 109.47066 * 299.99693 * 9 7 2 12 12 C 1.50704 * 109.46703 * 180.02562 * 9 7 2 13 13 C 1.33388 * 125.20388 * 259.99671 * 12 9 7 14 14 C 1.38427 * 114.92039 * 179.79664 * 13 12 9 15 15 C 1.33389 * 114.91930 * 0.42874 * 14 13 12 16 16 C 1.50699 * 125.20077 * 179.86062 * 15 14 13 17 17 O 1.42905 * 109.46972 * 89.71863 * 16 15 14 18 18 S 1.75886 * 125.20043 * 80.02768 * 12 9 7 19 19 H 0.97006 * 119.99798 * 359.97438 * 1 2 3 20 20 H 1.00901 * 111.00025 * 300.00309 * 11 9 7 21 21 H 1.00902 * 110.99881 * 63.95979 * 11 9 7 22 22 H 1.08003 * 122.53510 * 0.02562 * 13 12 9 23 23 H 1.08000 * 122.53845 * 180.27625 * 14 13 12 24 24 H 1.09004 * 109.47103 * 329.72050 * 16 15 14 25 25 H 1.09000 * 109.47247 * 209.71927 * 16 15 14 26 26 H 0.96705 * 113.99788 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6246 -2.5563 -0.8919 11 7 0.4059 -2.5777 1.1974 12 6 2.2303 -3.6446 -0.0015 13 6 2.5869 -4.3516 -1.0748 14 6 3.5078 -5.3562 -0.8320 15 6 3.8921 -5.4708 0.4402 16 6 4.8786 -6.4836 0.9617 17 8 6.1990 -5.9412 0.8939 18 16 3.0772 -4.2541 1.4145 19 1 -0.4850 0.8401 0.0004 20 1 0.9637 -2.5269 2.0368 21 1 -0.3014 -1.8582 1.1891 22 1 2.1901 -4.1528 -2.0595 23 1 3.8845 -6.0001 -1.6130 24 1 4.8257 -7.3880 0.3555 25 1 4.6380 -6.7255 1.9969 26 1 6.8873 -6.5404 1.2140 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713792118.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:22 Heat of formation + Delta-G solvation = -49.290358 kcal Electronic energy + Delta-G solvation = -11792.339158 eV Core-core repulsion = 9575.256862 eV Total energy + Delta-G solvation = -2217.082296 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.10595 -37.64529 -36.34158 -33.46467 -31.09539 -28.33627 -26.70209 -23.89734 -22.90506 -19.84725 -18.71798 -18.36466 -17.64795 -16.90028 -16.31768 -15.46350 -15.17688 -14.97689 -14.61290 -13.83199 -13.64597 -13.20128 -12.94389 -12.80108 -12.68580 -12.45223 -12.04085 -11.90960 -11.47288 -10.91143 -10.77004 -9.52539 -9.23747 -9.19509 -8.18841 -6.45244 0.19939 0.84085 1.28564 1.35403 1.37083 1.47609 1.92883 2.34542 2.99237 3.60841 4.11691 4.18148 4.31182 4.53814 4.59443 4.77741 4.84358 5.14456 5.34986 5.57182 5.62262 5.71599 5.98135 6.52734 6.78912 6.97112 6.99095 7.30250 8.76216 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.044795 B = 0.008546 C = 0.007986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.917271 B = 3275.641223 C = 3505.445739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.026 3.974 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.563 4.563 8 H 0.044 0.956 9 C 0.270 3.730 10 H 0.025 0.975 11 N -0.840 5.840 12 C -0.126 4.126 13 C -0.187 4.187 14 C -0.108 4.108 15 C -0.225 4.225 16 C 0.158 3.842 17 O -0.590 6.590 18 S 0.101 5.899 19 H 0.271 0.729 20 H 0.316 0.684 21 H 0.350 0.650 22 H 0.135 0.865 23 H 0.161 0.839 24 H 0.091 0.909 25 H 0.067 0.933 26 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.120 -10.884 2.143 13.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.175 4.175 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.603 4.603 8 H 0.063 0.937 9 C 0.158 3.842 10 H 0.043 0.957 11 N -0.369 5.369 12 C -0.245 4.245 13 C -0.216 4.216 14 C -0.139 4.139 15 C -0.342 4.342 16 C 0.079 3.921 17 O -0.400 6.400 18 S 0.365 5.635 19 H 0.080 0.920 20 H 0.125 0.875 21 H 0.165 0.835 22 H 0.152 0.848 23 H 0.178 0.822 24 H 0.109 0.891 25 H 0.086 0.914 26 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 7.431 -10.612 3.162 13.335 hybrid contribution 0.679 1.325 -1.299 1.976 sum 8.110 -9.287 1.862 12.470 Atomic orbital electron populations 1.69824 1.06858 1.28311 1.50205 1.25729 0.95816 1.02326 0.93627 0.85506 0.78556 0.78895 0.78398 1.20008 1.20091 1.19855 1.21974 0.93252 0.92173 1.52939 0.93720 1.17398 0.88110 0.87543 0.91170 0.95698 1.59511 1.18125 1.55558 1.03691 1.25101 1.02251 1.00721 0.96391 1.20214 1.03036 0.98888 0.99479 1.20193 0.98045 0.99212 0.96488 1.24558 1.07039 1.05064 0.97526 1.20408 0.79849 0.91695 1.00169 1.86565 1.16899 1.47758 1.88785 1.83816 1.38876 1.28483 1.12350 0.91997 0.87470 0.83451 0.84751 0.82185 0.89139 0.91442 0.74838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.71 11.54 21.45 0.25 -50.46 15 2 C 0.03 1.41 5.38 84.66 0.46 1.87 15 3 Si 0.96 43.46 29.54 68.60 2.03 45.49 15 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 5 H -0.28 -11.99 7.11 99.48 0.71 -11.29 15 6 H -0.27 -12.34 7.11 99.48 0.71 -11.64 15 7 C -0.56 -31.44 8.71 25.60 0.22 -31.21 15 8 H 0.04 2.56 7.74 -2.91 -0.02 2.54 15 9 C 0.27 14.13 3.15 43.42 0.14 14.27 15 10 H 0.03 1.45 8.12 -2.39 -0.02 1.43 15 11 N -0.84 -41.77 9.11 -174.95 -1.59 -43.36 15 12 C -0.13 -5.79 5.39 24.59 0.13 -5.65 15 13 C -0.19 -7.62 10.04 21.22 0.21 -7.41 15 14 C -0.11 -3.67 10.05 21.22 0.21 -3.46 15 15 C -0.22 -7.44 6.14 24.59 0.15 -7.29 15 16 C 0.16 3.66 7.54 71.24 0.54 4.20 15 17 O -0.59 -14.20 13.64 -148.98 -2.03 -16.23 15 18 S 0.10 3.94 22.52 -56.49 -1.27 2.67 15 19 H 0.27 14.20 8.31 -92.70 -0.77 13.43 15 20 H 0.32 15.08 8.32 -89.69 -0.75 14.34 15 21 H 0.35 18.39 7.08 -89.69 -0.63 17.76 15 22 H 0.13 5.25 8.06 -2.91 -0.02 5.23 15 23 H 0.16 4.28 8.06 -2.91 -0.02 4.25 15 24 H 0.09 1.55 8.14 -2.38 -0.02 1.53 15 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 15 26 H 0.40 4.71 9.12 -74.05 -0.68 4.03 15 Total: -1.00 -63.73 245.15 -1.40 -65.13 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: -0.83 Total: 31.47 kcal Atomic # 6 Polarization: -36.75 SS G_CDS: 2.06 Total: -34.69 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -1.35 Total: -93.83 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -2.03 Total: -16.23 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -1.27 Total: 2.67 kcal Total: -63.73 -1.40 -65.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713792118.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.838 kcal (2) G-P(sol) polarization free energy of solvation -63.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds