Wall clock time and date at job start Mon Mar 30 2020 02:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31431 * 1 3 3 Si 1.86799 * 119.99657 * 2 1 4 4 H 1.48497 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47096 * 300.00051 * 3 2 1 6 6 H 1.48492 * 109.47127 * 59.99986 * 3 2 1 7 7 C 1.38963 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99413 * 179.97438 * 7 2 1 9 9 N 1.36913 * 120.00578 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00248 * 179.97438 * 9 7 2 11 11 O 1.21793 * 120.00079 * 0.02562 * 10 9 7 12 12 C 1.46108 * 120.00326 * 179.97438 * 10 9 7 13 13 C 1.36855 * 126.12229 * 179.97438 * 12 10 9 14 14 N 1.30845 * 114.00356 * 179.78798 * 13 12 10 15 15 C 1.30251 * 117.27610 * 0.44784 * 14 13 12 16 16 N 1.37815 * 124.73613 * 179.83548 * 15 14 13 17 17 S 1.70907 * 110.52671 * 359.56724 * 15 14 13 18 18 H 0.96996 * 120.00182 * 359.97438 * 1 2 3 19 19 H 0.97000 * 119.99731 * 359.97438 * 9 7 2 20 20 H 1.08003 * 122.99350 * 0.02562 * 13 12 10 21 21 H 0.96996 * 120.00195 * 179.69856 * 16 15 14 22 22 H 0.97009 * 120.00196 * 359.42229 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3465 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3964 1.2124 7 6 2.0091 -1.2035 0.0005 8 1 3.0892 -1.2034 0.0001 9 7 1.3246 -2.3892 0.0005 10 6 1.9985 -3.5564 0.0005 11 8 3.2164 -3.5564 0.0010 12 6 1.2680 -4.8218 0.0011 13 6 1.8221 -6.0732 0.0007 14 7 0.9447 -7.0438 0.0058 15 6 -0.3144 -6.7103 0.0015 16 7 -1.3635 -7.6039 0.0025 17 16 -0.4839 -5.0096 0.0018 18 1 -0.4850 0.8400 0.0004 19 1 0.3546 -2.3892 0.0005 20 1 2.8885 -6.2442 0.0003 21 1 -2.2774 -7.2790 0.0035 22 1 -1.1880 -8.5580 -0.0018 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720236238.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:24 Heat of formation + Delta-G solvation = -20.358096 kcal Electronic energy + Delta-G solvation = -11472.150626 eV Core-core repulsion = 9152.782584 eV Total energy + Delta-G solvation = -2319.368042 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.031 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.79033 -39.72233 -36.11420 -35.61023 -33.38282 -30.44980 -27.25149 -25.69269 -22.92106 -20.95053 -20.04455 -19.79177 -17.89529 -17.23114 -16.67231 -16.27510 -16.08472 -15.67760 -15.18488 -15.09143 -14.33778 -13.58408 -12.96824 -12.57803 -12.38912 -12.08870 -11.91517 -11.57606 -10.93264 -10.52899 -10.34739 -10.11111 -8.86860 -8.54108 -5.99927 -0.38852 0.06833 0.68804 1.38187 1.43031 1.58474 1.70195 2.27827 2.39424 2.45351 3.17102 3.22600 3.87424 4.34707 4.53749 5.08767 5.36139 5.88343 5.93721 6.30675 6.47265 6.98608 7.01339 7.40383 7.94931 8.63693 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.063291 B = 0.007978 C = 0.007103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.298076 B = 3508.598360 C = 3941.054651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.012 4.012 3 Si 1.002 2.998 4 H -0.271 1.271 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.557 5.557 10 C 0.513 3.487 11 O -0.631 6.631 12 C -0.337 4.337 13 C 0.151 3.849 14 N -0.569 5.569 15 C 0.317 3.683 16 N -0.784 5.784 17 S 0.161 5.839 18 H 0.283 0.717 19 H 0.394 0.606 20 H 0.183 0.817 21 H 0.431 0.569 22 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.925 -10.167 -0.014 12.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.213 4.213 3 Si 0.825 3.175 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.192 5.192 10 C 0.301 3.699 11 O -0.521 6.521 12 C -0.464 4.464 13 C -0.008 4.008 14 N -0.295 5.295 15 C -0.055 4.055 16 N -0.337 5.337 17 S 0.408 5.592 18 H 0.092 0.908 19 H 0.229 0.771 20 H 0.200 0.800 21 H 0.265 0.735 22 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -8.090 -9.892 -0.005 12.779 hybrid contribution 0.636 0.378 -0.008 0.740 sum -7.454 -9.514 -0.013 12.086 Atomic orbital electron populations 1.69685 1.07031 1.29829 1.48772 1.26217 0.96678 1.02766 0.95619 0.84739 0.78037 0.76202 0.78544 1.19518 1.19270 1.19260 1.19848 0.93166 0.83555 1.50016 0.89516 1.41839 1.09084 1.04709 1.63524 1.16805 0.86727 0.82763 0.83581 1.90611 1.14463 1.87480 1.59500 1.25305 0.95955 0.98487 1.26605 1.22015 1.00414 0.84532 0.93796 1.66234 0.99107 1.35348 1.28803 1.23983 0.91150 0.94314 0.96064 1.41408 1.04464 1.07824 1.80008 1.83781 1.03156 0.99718 1.72509 0.90788 0.77138 0.79975 0.73474 0.74290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.24 13.05 21.67 0.28 -48.95 14 2 C -0.01 -0.64 5.50 84.93 0.47 -0.18 14 3 Si 1.00 42.58 29.55 68.60 2.03 44.61 14 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 14 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 14 6 H -0.27 -10.79 7.11 99.48 0.71 -10.09 14 7 C -0.34 -19.59 9.68 84.07 0.81 -18.77 14 8 H 0.09 5.32 7.15 -2.91 -0.02 5.30 14 9 N -0.56 -30.53 5.27 -311.10 -1.64 -32.17 14 10 C 0.51 27.21 7.72 86.29 0.67 27.88 14 11 O -0.63 -37.60 16.44 -4.65 -0.08 -37.68 14 12 C -0.34 -14.22 6.50 23.99 0.16 -14.07 14 13 C 0.15 5.71 11.15 84.52 0.94 6.65 14 14 N -0.57 -18.52 10.55 -200.56 -2.12 -20.63 14 15 C 0.32 8.50 8.53 179.43 1.53 10.03 14 16 N -0.78 -11.99 9.04 -59.98 -0.54 -12.53 14 17 S 0.16 5.07 22.32 -56.49 -1.26 3.81 14 18 H 0.28 14.01 8.31 -92.71 -0.77 13.24 14 19 H 0.39 20.51 7.06 -92.71 -0.65 19.86 14 20 H 0.18 6.71 8.06 -2.91 -0.02 6.68 14 21 H 0.43 3.96 8.95 -92.71 -0.83 3.13 14 22 H 0.42 4.91 8.95 -92.70 -0.83 4.08 14 Total: -1.00 -71.06 225.09 0.24 -70.82 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -1.01 Total: 21.19 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 4.57 Total: 11.54 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -4.02 Total: -114.29 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.08 Total: -37.68 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -1.26 Total: 3.81 kcal Total: -71.06 0.24 -70.82 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720236238.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.463 kcal (2) G-P(sol) polarization free energy of solvation -71.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds