Wall clock time and date at job start Mon Mar 30 2020 02:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99969 * 2 1 4 4 C 1.50706 * 109.46766 * 66.04937 * 3 2 1 5 5 H 1.07994 * 120.00134 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99505 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00134 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99783 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46825 * 90.00333 * 8 6 4 10 10 H 1.48497 * 109.47124 * 330.00331 * 8 6 4 11 11 H 1.48497 * 109.47017 * 210.00239 * 8 6 4 12 12 C 1.46905 * 110.99789 * 236.05000 * 2 1 3 13 13 H 1.08998 * 110.01624 * 65.54341 * 12 2 1 14 14 C 1.54264 * 110.02969 * 304.15535 * 12 2 1 15 15 C 1.54967 * 104.16120 * 217.13730 * 14 12 2 16 16 C 1.54892 * 102.77457 * 37.88770 * 15 14 12 17 17 H 1.09006 * 110.48186 * 80.76437 * 16 15 14 18 18 C 1.52999 * 110.48734 * 203.40487 * 16 15 14 19 19 N 1.46902 * 109.47287 * 289.78023 * 18 16 15 20 20 C 1.53872 * 110.03159 * 186.94283 * 12 2 1 21 21 H 1.08996 * 109.47309 * 56.43366 * 1 2 3 22 22 H 1.09001 * 109.47005 * 176.44064 * 1 2 3 23 23 H 1.09001 * 109.46506 * 296.43438 * 1 2 3 24 24 H 1.08997 * 109.47389 * 306.04802 * 3 2 1 25 25 H 1.09002 * 109.46923 * 186.04874 * 3 2 1 26 26 H 0.96994 * 120.00343 * 359.97438 * 7 6 4 27 27 H 1.09001 * 110.48915 * 335.78418 * 14 12 2 28 28 H 1.08997 * 110.48829 * 98.42906 * 14 12 2 29 29 H 1.09004 * 110.72052 * 279.57516 * 15 14 12 30 30 H 1.08995 * 110.92366 * 156.29493 * 15 14 12 31 31 H 1.09003 * 109.46967 * 49.77886 * 18 16 15 32 32 H 1.08997 * 109.47185 * 169.77373 * 18 16 15 33 33 H 1.00900 * 111.00245 * 56.03717 * 19 18 16 34 34 H 1.00899 * 110.99924 * 179.97438 * 19 18 16 35 35 H 1.09002 * 110.03065 * 238.57077 * 20 12 2 36 36 H 1.09000 * 110.03025 * 359.97438 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 1.2986 5 1 1.0740 1.5114 2.0485 6 6 2.0277 3.3491 1.5290 7 7 2.7129 4.0015 0.6154 8 14 1.5828 4.1868 3.1383 9 1 2.6589 3.9498 4.1337 10 1 0.3044 3.6301 3.6492 11 1 1.4314 5.6465 2.9111 12 6 1.9955 -0.7659 -1.1377 13 1 1.7333 -0.2720 -2.0733 14 6 1.4251 -2.1992 -1.1189 15 6 2.6041 -3.0827 -1.5995 16 6 3.8303 -2.4080 -0.9359 17 1 3.9210 -2.7203 0.1045 18 6 5.1080 -2.7400 -1.7094 19 7 5.4441 -4.1567 -1.5148 20 6 3.5241 -0.8985 -1.0217 21 1 -0.3634 0.5682 -0.8563 22 1 -0.3633 -1.0257 -0.0638 23 1 -0.3632 0.4575 0.9203 24 1 1.5611 1.9274 -0.8309 25 1 3.0798 1.3444 -0.1083 26 1 2.9436 3.5667 -0.2203 27 1 1.1269 -2.4779 -0.1083 28 1 0.5810 -2.2828 -1.8035 29 1 2.6889 -3.0552 -2.6858 30 1 2.4904 -4.1082 -1.2482 31 1 4.9510 -2.5463 -2.7706 32 1 5.9257 -2.1190 -1.3439 33 1 4.6754 -4.7514 -1.7862 34 1 6.2847 -4.4012 -2.0164 35 1 4.0038 -0.4696 -1.9015 36 1 3.8753 -0.3942 -0.1215 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724051363.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:22 Heat of formation + Delta-G solvation = -16.311231 kcal Electronic energy + Delta-G solvation = -14625.589538 eV Core-core repulsion = 12336.569305 eV Total energy + Delta-G solvation = -2289.020234 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -38.85853 -35.89117 -33.55388 -32.28341 -29.07973 -27.68973 -26.64151 -24.02613 -23.33840 -21.51020 -19.84393 -18.87034 -16.70719 -15.96923 -15.85413 -14.86175 -14.82977 -13.79776 -13.54573 -13.47899 -13.01475 -12.96677 -12.46533 -11.97801 -11.55667 -11.18935 -11.01724 -10.77584 -10.62827 -10.53862 -10.41087 -10.36332 -10.24945 -10.09762 -9.95552 -8.77238 -8.61264 -8.32476 -7.26178 -6.33332 -4.01374 3.46696 3.50151 3.65982 4.48607 4.54771 4.79638 4.82196 4.97959 5.13337 5.42005 5.43115 5.58635 5.67506 5.80386 5.85347 5.91081 6.00968 6.07124 6.14347 6.19924 6.22081 6.39040 6.54038 6.63136 6.68612 6.76293 7.06029 7.06563 7.15564 7.33850 7.88983 8.05597 8.39129 8.64110 8.91587 9.69266 11.05942 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042217 B = 0.007006 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.084764 B = 3995.869408 C = 4358.277708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.528 5.528 3 C 0.179 3.821 4 C -0.586 4.586 5 H 0.057 0.943 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 1.075 2.925 9 H -0.288 1.288 10 H -0.289 1.289 11 H -0.286 1.286 12 C 0.079 3.921 13 H 0.027 0.973 14 C -0.115 4.115 15 C -0.119 4.119 16 C -0.086 4.086 17 H 0.084 0.916 18 C 0.068 3.932 19 N -0.851 5.851 20 C -0.111 4.111 21 H 0.009 0.991 22 H 0.048 0.952 23 H 0.071 0.929 24 H -0.023 1.023 25 H 0.025 0.975 26 H 0.266 0.734 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.024 0.976 32 H 0.071 0.929 33 H 0.338 0.662 34 H 0.337 0.663 35 H 0.055 0.945 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.790 -13.389 -5.613 14.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.252 5.252 3 C 0.054 3.946 4 C -0.625 4.625 5 H 0.075 0.925 6 C -0.191 4.191 7 N -0.553 5.553 8 Si 0.903 3.097 9 H -0.214 1.214 10 H -0.215 1.215 11 H -0.211 1.211 12 C -0.030 4.030 13 H 0.045 0.955 14 C -0.153 4.153 15 C -0.157 4.157 16 C -0.105 4.105 17 H 0.102 0.898 18 C -0.062 4.062 19 N -0.380 5.380 20 C -0.150 4.150 21 H 0.027 0.973 22 H 0.067 0.933 23 H 0.090 0.910 24 H -0.006 1.006 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.089 0.911 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.073 0.927 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.157 -11.983 -3.566 12.556 hybrid contribution -0.546 -1.024 -2.762 2.996 sum 0.610 -13.008 -6.328 14.478 Atomic orbital electron populations 1.22200 0.88893 0.99029 1.00895 1.62228 1.06793 1.16852 1.39349 1.19886 0.95062 0.82983 0.96701 1.22013 1.38577 0.99653 1.02208 0.92515 1.25848 0.94524 0.94736 1.03946 1.70763 1.36799 1.39927 1.07855 0.83456 0.76022 0.75800 0.74381 1.21428 1.21499 1.21149 1.22198 0.94538 0.93722 0.92559 0.95512 1.22444 0.96837 0.94498 1.01507 1.22539 0.95308 0.98540 0.99286 1.21975 0.92805 0.95535 1.00213 0.89786 1.21873 0.98051 0.89116 0.97207 1.58731 1.08737 1.04501 1.66051 1.22219 0.95251 0.95015 1.02465 0.97260 0.93341 0.90984 1.00573 0.95741 0.92371 0.90461 0.92610 0.92379 0.91844 0.95762 0.91055 0.84958 0.85152 0.92655 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.10 60.07 0.55 1.33 16 2 N -0.53 -11.76 4.52 -234.98 -1.06 -12.82 16 3 C 0.18 4.75 3.80 -4.97 -0.02 4.73 16 4 C -0.59 -16.96 8.56 -34.44 -0.29 -17.26 16 5 H 0.06 1.65 7.10 -52.49 -0.37 1.28 16 6 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 7 N -0.92 -28.38 13.65 55.43 0.76 -27.62 16 8 Si 1.07 25.79 29.90 -169.99 -5.08 20.71 16 9 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.08 1.46 2.67 -66.59 -0.18 1.28 16 13 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 14 C -0.11 -1.72 5.05 -25.03 -0.13 -1.85 16 15 C -0.12 -1.50 5.69 -24.69 -0.14 -1.64 16 16 C -0.09 -1.22 3.09 -88.96 -0.28 -1.50 16 17 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 18 C 0.07 0.83 6.12 -3.82 -0.02 0.80 16 19 N -0.85 -8.97 9.62 -10.37 -0.10 -9.07 16 20 C -0.11 -1.92 5.39 -25.62 -0.14 -2.06 16 21 H 0.01 0.18 8.10 -51.93 -0.42 -0.24 16 22 H 0.05 0.83 6.43 -51.93 -0.33 0.50 16 23 H 0.07 1.56 6.96 -51.93 -0.36 1.20 16 24 H -0.02 -0.66 7.96 -51.93 -0.41 -1.07 16 25 H 0.02 0.68 6.17 -51.93 -0.32 0.36 16 26 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 27 H 0.08 1.22 7.51 -51.93 -0.39 0.83 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.68 7.97 -51.93 -0.41 0.27 16 30 H 0.06 0.71 8.04 -51.93 -0.42 0.30 16 31 H 0.02 0.28 8.02 -51.93 -0.42 -0.14 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.34 3.16 8.28 -39.29 -0.33 2.83 16 34 H 0.34 2.87 9.08 -39.29 -0.36 2.52 16 35 H 0.05 0.90 7.84 -51.93 -0.41 0.50 16 36 H 0.08 1.68 6.67 -51.93 -0.35 1.34 16 LS Contribution 279.85 15.07 4.22 4.22 Total: -1.00 -31.03 279.85 -8.09 -39.12 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.08 Total: 1.35 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -0.75 Total: -15.89 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: -0.40 Total: -49.51 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.03 -8.09 -39.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724051363.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.808 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds